Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003838

Physical Location & Seq

Genomic Coordinates Reverse (-)

21497633 .. 21499943

Gene Structure 2311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGAAGTCAATTATTGTCCGGAAACACCGTTGCTTTCGTCAAACGATCATGAGGCTATTGATCACAAACCAAAGTTAACCGGTATGGTTTCTTCTATGAAATCGAATTTCTTCGCGGATTTGCCTCAAAAACTTCGATCAAAAATCGATCCCGAGAACCCTTTGCACCTTGATGTCTCCAAAGCTGCAGGCCTCAAAGAAGATGAAAAGGAGTACTACGAAAGACAATTGGCAACACTAAAATCCTTTGAAGAAGTAGAAAGTTTCTTAGCTCGATCAGATGAGTATACCATCGATGAAAAAGAAGAAGAAGAAGATCGAGCTGAGAGAGCTGCACAAGAGCTTGCCATGCAAATCTCAAATTGGGCTAACATCTTTTTACTTGCTCTCAAGATATATGCTACGGTAAAGAGTGGATCCATTGCGATTGCAGCATCTACACTCGACTCATTGCTTGACCTTATGGCGGGAGGAATACTTTGGTTCACACATTTGTCTATGAAGAACGTAAATATCTACAAATATCCTATAGGAAAGCTTAGGGTGCAACCTGTTGGAATCATCATTTTCGCCGCTGTTATGGCTACCCTTGGGTTCCAAGTGCTGCTTGTGGCAGCTGAGCAATTGATTTCAAATGAACCTTCAGAGAAAATGAATCATGTCCAATTGATTTGGTTGTATTCAATCATGCTAAGCGCAACCGCTATTAAACTCGTCTTATGGATCTACTGCAAAAGCTCGAGAAACCATATAGTCCGTGCATATGCAAAGGATCATCACTTTGATGTGGTAACAAATGTTCTTGGATTGGTTGCGGCCGTTCTTGCTAATGCTTTTTACTGGTGGCTCGATCCAACTGGTGCTATTCTCTTAGCCATCTACACTATTGTCAATTGGTCTGGGACTGTTATGGAAAATGCAGTTTCATTGATCGGACAATCAGCTCCTCCAGAAGTACTACAAAAGTTGACATACCTAGTGATGCGACAAGGCGGCGATAATATCAAACATGTGGATACCGTCCGTGCATATACCTTCGGTGTTCTTTATTTTGTCGAGGTGGATATAGAACTGCCAGAGGATTTGCCATTGAAAGAAGCTCATGCGATTGGTGAATCATTGCAAATAAAGCTTGAAGAACTTCCTGAGGTGGAAAGAGCTTTTGTTCATCTAGATTTTGAGTGTCATCACAAGCCTGAACATTCCGTCCTTTCTACAATCCCCAACGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0009705 GO:0009791 GO:0009845 GO:0010154 GO:0015075 GO:0015318 GO:0016020 GO:0022414 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0035618 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071421 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

411

Amino Acids

46.24

Weight (kDa)

5.12

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	119 - 311	4.1e-25	Cation efflux transmembrane domain
ZT_dimer	PF16916	318 - 392	2.2e-06	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58060 AT3G58060
fragaria_vesca	FvH4_3g44550 FvH4_3g44550 FvH4_3g44550
malus_domestica	MD03G1011700.v1.1 MD11G1014600.v1.1
prunus_persica	Prupe.6G012100_v2.0.a1 Prupe.7G081200_v2.0.a1
pyrus_communis	pycom11g00990
rosa_chinensis	RchiOBHm_Chr3g0479221 RchiOBHm_Chr5g0081261
rosa_laevigata	RLG00000023593 RLG00000036922
rosa_multiflora	Rmu_sc0007768.1_g000006 Rmu_ssc0000432.1_g000058
rosa_roxburghii	Rroxscaffold_1G00002230 Rroxscaffold_6G00402530
rosa_rugosa	Rorug03G0172300 Rorug03G0172800 Rorug03G0172800 Rorug05G0475200 Rorug05G0475300
rosa_samantha	Rh3AG223900 Rh3BG256800 Rh3CG252500 Rh3DG248700 Rh5AG526900 Rh5BG551100 Rh5CG574000 Rh5DG561100
rosa_wichuraiana	Rw3G020070 Rw3G020530 Rw5G048980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	287
AccII	CGCG	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	6 cut(s)	116, 467, 573, 702, 815, 993
AclWI	GGATC	6 cut(s)	143, 411, 424, 731, 780, 845
AcoI	YGGCCR	1 cut(s)	816
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	2 cut(s)	215, 957
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflIII	ACRYGT	1 cut(s)	1009
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	5 cut(s)	251, 633, 684, 1093, 1136
AloI	GAACNNNNNNTCC	2 cut(s)	1191, 1223
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	6 cut(s)	143, 411, 424, 731, 780, 845
Ama87I	CYCGRG	2 cut(s)	152, 739
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	2 cut(s)	190, 816
ApeKI	GCWGC	5 cut(s)	185, 332, 431, 604, 614
ApoI	RAATTY	1 cut(s)	106
AsiGI	ACCGGT	1 cut(s)	80
Asp700I	GAANNNNTTC	2 cut(s)	110, 1140
AspLEI	GCGC	1 cut(s)	698
AsuHPI	GGTGA	1 cut(s)	1124
AvaI	CYCGRG	2 cut(s)	152, 739
AxyI	CCTNAGG	1 cut(s)	1146
BamHI	GGATCC	1 cut(s)	416
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BbvI	GCAGC	5 cut(s)	172, 319, 443, 591, 626
BccI	CCATC	2 cut(s)	299, 884
BceAI	ACGGC	1 cut(s)	803
BciVI	GTATCC	1 cut(s)	1009
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	977, 1172
BfmI	CTRYAG	2 cut(s)	186, 528
BfuI	GTATCC	1 cut(s)	1009
BisI	GCNGC	8 cut(s)	186, 333, 432, 573, 605, 615, 816, 994
BlpI	GCTNAGC	2 cut(s)	618, 692
BlsI	GCNGC	8 cut(s)	187, 334, 433, 574, 606, 616, 817, 995
BmcAI	AGTACT	2 cut(s)	215, 957
BmeT110I	CYCGRG	2 cut(s)	152, 739
BmiI	GGNNCC	2 cut(s)	418, 596
BmsI	GCATC	2 cut(s)	443, 972
BpmI	CTGGAG	1 cut(s)	933
Bpu10I	CCTNAGC	1 cut(s)	539
Bpu1102I	GCTNAGC	2 cut(s)	618, 692
BpuEI	CTTGAG	1 cut(s)	374
Bsa29I	ATCGAT	2 cut(s)	147, 294
BsaJI	CCNNGG	1 cut(s)	589
BsaWI	WCCGGW	2 cut(s)	19, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	845, 862
Bse21I	CCTNAGG	1 cut(s)	1146
Bse3DI	GCAATG	3 cut(s)	420, 449, 1118
BseAI	TCCGGA	1 cut(s)	19
BseCI	ATCGAT	2 cut(s)	147, 294
BseDI	CCNNGG	1 cut(s)	589
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	3 cut(s)	420, 449, 1118
BseMII	CTCAG	3 cut(s)	315, 609, 1137
BseNI	ACTGG	2 cut(s)	845, 862
BseRI	GAGGAG	1 cut(s)	936
BseX3I	CGGCCG	1 cut(s)	816
BseXI	GCAGC	5 cut(s)	172, 319, 443, 591, 626
BsgI	GTGCAG	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	819
BshFI	GGCC	2 cut(s)	192, 818
BshTI	ACCGGT	1 cut(s)	80
BshVI	ATCGAT	2 cut(s)	147, 294
BsiEI	CGRYCG	1 cut(s)	819
BsiHKCI	CYCGRG	2 cut(s)	152, 739
BsiSI	CCGG	2 cut(s)	20, 81
BslFI	GGGAC	1 cut(s)	916
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	916
BsnI	GGCC	2 cut(s)	192, 818
BsoBI	CYCGRG	2 cut(s)	152, 739
Bsp13I	TCCGGA	1 cut(s)	19
Bsp1720I	GCTNAGC	2 cut(s)	618, 692
BspACI	CCGC	6 cut(s)	116, 467, 573, 702, 815, 993
BspANI	GGCC	2 cut(s)	192, 818
BspCNI	CTCAG	3 cut(s)	316, 610, 1138
BspDI	ATCGAT	2 cut(s)	147, 294
BspEI	TCCGGA	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	418, 596
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	6 cut(s)	143, 411, 424, 731, 780, 845
BsrDI	GCAATG	3 cut(s)	420, 449, 1118
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	845, 862
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	589
BssNAI	GTATAC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	589
Bst1107I	GTATAC	1 cut(s)	288
Bst4CI	ACNGT	4 cut(s)	30, 406, 907, 1021
BstC8I	GCNNGC	2 cut(s)	190, 345
BstDEI	CTNAG	7 cut(s)	268, 324, 539, 618, 692, 871, 1146
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	698
BstMAI	GTCTC	1 cut(s)	181
BstMCI	CGRYCG	1 cut(s)	819
BstMWI	GCNNNNNNNGC	7 cut(s)	329, 349, 431, 544, 581, 824, 1129
BstNSI	RCATGY	1 cut(s)	1013
BstSFI	CTRYAG	2 cut(s)	186, 528
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	5 cut(s)	172, 319, 443, 591, 626
BstX2I	RGATCY	2 cut(s)	416, 723
BstYI	RGATCY	2 cut(s)	416, 723
BstZ17I	GTATAC	1 cut(s)	288
BstZI	CGGCCG	1 cut(s)	816
Bsu15I	ATCGAT	2 cut(s)	147, 294
Bsu36I	CCTNAGG	1 cut(s)	1146
BsuI	GTATCC	1 cut(s)	1009
BsuRI	GGCC	2 cut(s)	192, 818
BsuTUI	ATCGAT	2 cut(s)	147, 294
Cac8I	GCNNGC	2 cut(s)	190, 345
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	1 cut(s)	698
Cfr10I	RCCGGY	1 cut(s)	80
ClaI	ATCGAT	2 cut(s)	147, 294
Csp6I	GTAC	2 cut(s)	214, 956
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	6 cut(s)	50, 349, 659, 688, 1010, 1103
CviQI	GTAC	2 cut(s)	214, 956
DdeI	CTNAG	7 cut(s)	268, 324, 539, 618, 692, 871, 1146
EaeI	YGGCCR	1 cut(s)	816
EagI	CGGCCG	1 cut(s)	816
EclXI	CGGCCG	1 cut(s)	816
Eco130I	CCWWGG	1 cut(s)	589
Eco147I	AGGCCT	1 cut(s)	192
Eco52I	CGGCCG	1 cut(s)	816
Eco57I	CTGAAG	1 cut(s)	627
Eco81I	CCTNAGG	1 cut(s)	1146
Eco88I	CYCGRG	2 cut(s)	152, 739
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	6 cut(s)	53, 352, 662, 691, 1013, 1106
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	916
FatI	CATG	6 cut(s)	49, 348, 658, 687, 1009, 1102
FauI	CCCGC	1 cut(s)	460
FauNDI	CATATG	1 cut(s)	763
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	8 cut(s)	186, 333, 432, 573, 605, 615, 816, 994
Fsp4HI	GCNGC	8 cut(s)	186, 333, 432, 573, 605, 615, 816, 994
FspBI	CTAG	2 cut(s)	977, 1172
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	8 cut(s)	186, 333, 432, 573, 605, 615, 816, 994
GsuI	CTGGAG	1 cut(s)	933
HaeIII	GGCC	2 cut(s)	192, 818
HapII	CCGG	2 cut(s)	20, 81
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	6 cut(s)	53, 352, 662, 691, 1013, 1106
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HincII	GTYRAC	2 cut(s)	78, 969
HindII	GTYRAC	2 cut(s)	78, 969
HindIII	AAGCTT	2 cut(s)	536, 1130
HinfI	GANTC	4 cut(s)	446, 558, 655, 1115
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	20, 81
HphI	GGTGA	1 cut(s)	1124
Hpy166II	GTNNAC	4 cut(s)	78, 288, 486, 969
Hpy188I	TCNGA	3 cut(s)	280, 646, 935
Hpy188III	TCNNGA	8 cut(s)	20, 50, 152, 391, 741, 950, 1145, 1172
Hpy8I	GTNNAC	4 cut(s)	78, 288, 486, 969
HpyAV	CCTTC	2 cut(s)	651, 1045
HpyCH4III	ACNGT	4 cut(s)	30, 406, 907, 1021
HpyCH4IV	ACGT	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	7 cut(s)	329, 349, 431, 544, 581, 824, 1129
HpyF3I	CTNAG	7 cut(s)	268, 324, 539, 618, 692, 871, 1146
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	6 cut(s)	53, 352, 662, 691, 1013, 1106
HspAI	GCGC	1 cut(s)	696
Kpn2I	TCCGGA	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	5 cut(s)	172, 319, 443, 591, 626
LweI	GCATC	2 cut(s)	443, 972
MaeI	CTAG	2 cut(s)	977, 1172
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	790
MfeI	CAATTG	4 cut(s)	227, 623, 665, 892
MflI	RGATCY	2 cut(s)	416, 723
MluCI	AATT	7 cut(s)	10, 106, 227, 361, 623, 665, 892
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	2 cut(s)	535, 878
MnlI	CCTC	8 cut(s)	46, 135, 203, 464, 957, 1051, 1072, 1141
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	2 cut(s)	110, 1140
MseI	TTAA	2 cut(s)	77, 708
MslI	CAYNNNNRTG	2 cut(s)	171, 783
MspA1I	CMGCKG	2 cut(s)	575, 617
MspI	CCGG	2 cut(s)	20, 81
MunI	CAATTG	4 cut(s)	227, 623, 665, 892
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	7 cut(s)	329, 349, 431, 544, 581, 824, 1129
NdeI	CATATG	1 cut(s)	763
NlaIII	CATG	6 cut(s)	53, 352, 662, 691, 1013, 1106
NlaIV	GGNNCC	2 cut(s)	418, 596
NspI	RCATGY	1 cut(s)	1013
PaeR7I	CTCGAG	1 cut(s)	739
PagI	TCATGA	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	192
PciI	ACATGT	1 cut(s)	1009
PdmI	GAANNNNTTC	2 cut(s)	110, 1140
PfeI	GAWTC	3 cut(s)	558, 655, 1115
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	8 cut(s)	187, 334, 433, 574, 606, 616, 817, 995
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PscI	ACATGT	1 cut(s)	1009
PspN4I	GGNNCC	2 cut(s)	418, 596
PsrI	GAACNNNNNNTAC	2 cut(s)	783, 815
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	416, 723
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	2 cut(s)	215, 957
RsaNI	GTAC	2 cut(s)	214, 956
RseI	CAYNNNNRTG	2 cut(s)	171, 783
SaqAI	TTAA	2 cut(s)	77, 708
SatI	GCNGC	8 cut(s)	186, 333, 432, 573, 605, 615, 816, 994
ScaI	AGTACT	2 cut(s)	215, 957
SchI	GAGTC	1 cut(s)	440
SfaNI	GCATC	2 cut(s)	443, 972
SfcI	CTRYAG	2 cut(s)	186, 528
Sfr274I	CTCGAG	1 cut(s)	739
SlaI	CTCGAG	1 cut(s)	739
SmiMI	CAYNNNNRTG	2 cut(s)	171, 783
SmlI	CTYRAG	2 cut(s)	389, 739
SmoI	CTYRAG	2 cut(s)	389, 739
Sse9I	AATT	7 cut(s)	10, 106, 227, 361, 623, 665, 892
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	6 cut(s)	116, 467, 573, 702, 815, 993
SspMI	CTAG	2 cut(s)	977, 1172
StuI	AGGCCT	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	4 cut(s)	30, 406, 907, 1021
TaiI	ACGT	1 cut(s)	510
TasI	AATT	7 cut(s)	10, 106, 227, 361, 623, 665, 892
TatI	WGTACW	2 cut(s)	213, 955
TauI	GCSGC	3 cut(s)	575, 818, 996
TfiI	GAWTC	3 cut(s)	558, 655, 1115
Tru1I	TTAA	2 cut(s)	77, 708
Tru9I	TTAA	2 cut(s)	77, 708
TseI	GCWGC	5 cut(s)	185, 332, 431, 604, 614
TspDTI	ATGAA	8 cut(s)	113, 219, 312, 515, 651, 668, 915, 1157
TspGWI	ACGGA	3 cut(s)	746, 1013, 1195
XapI	RAATTY	1 cut(s)	106
XbaI	TCTAGA	1 cut(s)	1171
XceI	RCATGY	1 cut(s)	1013
XhoI	CTCGAG	1 cut(s)	739
XmiI	GTMKAC	1 cut(s)	287
XmnI	GAANNNNTTC	2 cut(s)	110, 1140
XspI	CTAG	2 cut(s)	977, 1172
ZrmI	AGTACT	2 cut(s)	215, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.