Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003838

Physical Location & Seq

Genomic Coordinates Reverse (-)

14565805 .. 14567757

Gene Structure 1953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0172300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCAATTGTGCCAATCACAGCCGCTGGTGCTCCCGGTGCTGTTTCGCTCCAGGATATCGGGATGGTGCTCAATCACAGCTTTGGTTACAAAAAGCTGGACTTGGAGCATCTTTTGCCAGCTCCTATTGGTTTTGTTGACAGCAAGACACAAGTTACTCGGTGGGAAGAGGGGAATGGTGTTGGTAAGATGGGTCGTTTTGGCTCTATCTTGTGCCCCATTTGGATGCTGGAATTTATTACATGTTGGTATAGGACACAGAGGCCGAAGTTGGTATTGATAGGACACAGAGGAAATGGAACGAACATGTTGCAGTCCTCTGATATCAGAATGAGAGGAATCAAAGGGAACTCAATCCTCTCCTTCAATACTGCTGCTCAATTCCCAATTGATTTTGTTGAGTTCGACGTTGAGGTGACCAAAGATGACTGTCCAGTAATTTTCCATGACAGCTTTATCGTCAGCGAGGACAAGGATGTTTTCATTGAGAAGAGAGTTACAGACCTTAATCTACCAGAATTTCTTTCCTATGGACCCCAGAAACAGCTTGGAGAGGTCATCATCAATGTTGATTTGTTTGTTTTCATATTGATTTTTTTGTATCTGTGGATTTTTTGTGGAATTGAAGTATATTTCTTGCCTGAAGGAGGGTCTCAAATGTATGCTGATGTTAGAAAGAACTCTTGGGAAGAAGCAGTTAAGATGTGCATGGCAGGTGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0009705 GO:0009791 GO:0009845 GO:0010154 GO:0015075 GO:0015318 GO:0016020 GO:0022414 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0035618 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071421 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

241

Amino Acids

27.09

Weight (kDa)

5.13

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	96 - 178	7e-15	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58060 AT3G58060
fragaria_vesca	FvH4_3g44550 FvH4_3g44550 FvH4_3g44550
malus_domestica	MD03G1011700.v1.1 MD11G1014600.v1.1
prunus_persica	Prupe.6G012100_v2.0.a1 Prupe.7G081200_v2.0.a1
pyrus_communis	pycom11g00990
rosa_chinensis	RchiOBHm_Chr3g0479221 RchiOBHm_Chr5g0081261
rosa_laevigata	RLG00000023593 RLG00000036922
rosa_multiflora	Rmu_sc0007768.1_g000006 Rmu_ssc0000432.1_g000058
rosa_roxburghii	Rroxscaffold_1G00002230 Rroxscaffold_6G00402530
rosa_rugosa	Rorug03G0172300 Rorug03G0172800 Rorug03G0172800 Rorug05G0475200 Rorug05G0475300
rosa_samantha	Rh3AG223900 Rh3BG256800 Rh3CG252500 Rh3DG248700 Rh5AG526900 Rh5BG551100 Rh5CG574000 Rh5DG561100
rosa_wichuraiana	Rw3G020070 Rw3G020530 Rw5G048980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	704
Acc36I	ACCTGC	1 cut(s)	704
AciI	CCGC	1 cut(s)	24
AcsI	RAATTY	2 cut(s)	233, 518
AcuI	CTGAAG	1 cut(s)	663
AfiI	CCNNNNNNNGG	1 cut(s)	647
AflIII	ACRYGT	2 cut(s)	242, 306
AgsI	TTSAA	2 cut(s)	367, 626
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	667, 699
AluBI	AGCT	5 cut(s)	81, 97, 122, 453, 547
AluI	AGCT	5 cut(s)	81, 97, 122, 453, 547
Alw21I	GWGCWC	2 cut(s)	34, 72
Alw26I	GTCTC	1 cut(s)	657
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	233, 518
AspS9I	GGNCC	1 cut(s)	533
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	34, 72
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	2 cut(s)	58, 184
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	657
BfuAI	ACCTGC	1 cut(s)	704
BisI	GCNGC	2 cut(s)	24, 375
BlsI	GCNGC	2 cut(s)	25, 376
Bme1390I	CCNGG	2 cut(s)	36, 53
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	2 cut(s)	36, 53
BmsI	GCATC	2 cut(s)	118, 216
BpmI	CTGGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	53
BseGI	GGATG	3 cut(s)	69, 231, 481
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseNI	ACTGG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	361
BshFI	GGCC	1 cut(s)	265
BsiHKAI	GWGCWC	2 cut(s)	34, 72
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmAI	GTCTC	1 cut(s)	657
BsnI	GGCC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	657
Bsp1286I	GDGCHC	3 cut(s)	34, 72, 218
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	2 cut(s)	162, 485
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	415
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	3 cut(s)	69, 231, 481
BstMAI	GTCTC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 38, 115
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	2 cut(s)	246, 310
BstPI	GGTNACC	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	34, 51
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	69, 231, 481
BveI	ACCTGC	1 cut(s)	704
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	533
CviAII	CATG	4 cut(s)	243, 307, 446, 709
CviJI	RGCY	8 cut(s)	23, 81, 97, 122, 204, 265, 453, 547
CviKI_1	RGCY	8 cut(s)	23, 81, 97, 122, 204, 265, 453, 547
Eam1104I	CTCTTC	2 cut(s)	162, 485
EarI	CTCTTC	2 cut(s)	162, 485
Eco31I	GGTCTC	1 cut(s)	657
Eco32I	GATATC	2 cut(s)	58, 325
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	663
Eco91I	GGTNACC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoO65I	GGTNACC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	51
EcoRV	GATATC	2 cut(s)	58, 325
FaeI	CATG	4 cut(s)	246, 310, 449, 712
FaiI	YATR	9 cut(s)	244, 252, 308, 447, 531, 587, 631, 663, 710
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	4 cut(s)	242, 306, 445, 708
Fnu4HI	GCNGC	2 cut(s)	24, 375
FokI	GGATG	3 cut(s)	76, 238, 488
Fsp4HI	GCNGC	2 cut(s)	24, 375
GluI	GCNGC	2 cut(s)	24, 375
GsuI	CTGGAG	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	4 cut(s)	246, 310, 449, 712
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	322, 329
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	373, 638
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	2 cut(s)	313, 708
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 38, 115
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	4 cut(s)	246, 310, 449, 712
LmnI	GCTCC	4 cut(s)	37, 54, 106, 127
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	2 cut(s)	118, 216
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	4 cut(s)	86, 154, 415, 496
MboII	GAAGA	3 cut(s)	179, 502, 701
MfeI	CAATTG	2 cut(s)	6, 387
MhlI	GDGCHC	3 cut(s)	34, 72, 218
MluCI	AATT	7 cut(s)	6, 233, 380, 387, 438, 518, 621
MseI	TTAA	2 cut(s)	507, 699
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	36, 53
MunI	CAATTG	2 cut(s)	6, 387
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	29, 38, 115
NciI	CCSGG	1 cut(s)	36
NlaIII	CATG	4 cut(s)	246, 310, 449, 712
NlaIV	GGNNCC	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	2 cut(s)	246, 310
PaqCI	CACCTGC	1 cut(s)	704
PciI	ACATGT	2 cut(s)	242, 306
PfeI	GAWTC	1 cut(s)	339
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	25, 376
PscI	ACATGT	2 cut(s)	242, 306
Psp6I	CCWGG	1 cut(s)	51
PspEI	GGTNACC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	507, 699
SatI	GCNGC	2 cut(s)	24, 375
Sau96I	GGNCC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	36, 53
SduI	GDGCHC	3 cut(s)	34, 72, 218
SfaNI	GCATC	2 cut(s)	118, 216
SinI	GGWCC	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	7 cut(s)	6, 233, 380, 387, 438, 518, 621
SsiI	CCGC	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	34, 51
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	405
TasI	AATT	7 cut(s)	6, 233, 380, 387, 438, 518, 621
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	2 cut(s)	507, 699
Tru9I	TTAA	2 cut(s)	507, 699
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	472, 574
VpaK11BI	GGWCC	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	645
XapI	RAATTY	2 cut(s)	233, 518
XceI	RCATGY	2 cut(s)	246, 310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.