Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003838

Physical Location & Seq

Genomic Coordinates Forward (+)

81288958 .. 81293003

Gene Structure 4046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG574000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTCTTTCGGGGCCTCAAATTTGTATGTAGAAGCCTTTTGGGAAGTGGGAATTGTTTCGCCATTGTCATTTGTGACCCTGCCATTTTTTAGTGTGTTCTTTCATTTTCGGAGGAACCAAATAGAAGGTTTGGTATACGGTGTTACATTGATTATCCTTGTCTTTAGTTTATTTCTTTTTCTTCCTTTTCTCTGCAATCAAATAGATGTGCAACTAAGTAGCCTTGGAATCGCCATTTCGGCCTCCCTGTGTTTATTTGGCTTCTACTTAATTGCAGGAGAGAAGGACTACTACGAAAAACAATTTGCAACCCTTAAATCCTTTGAGGAAGTTGACACTGTAGTCGCCGCTGAGTCCATTGATGAGGAAAATGAGGAAAATCTTGCAGAACAAGGACAACATGAAAGAGCAATGAAGATTTCCAATTATGCAAATATAATTCTCTTGGCACTTAAGATTTATGCTACTGTAAAAAGCGGGTCCATAGCCATTGCTGCTTCAACACTAGATTCTTTACTAGATCTCATGGCGGGTGGCATACTCTGGTTCACTCACCTGGCAATGAAGAACGTTAATATCTACCACTATCCTATCGGAAAATTGAGGGTGCAGCCTGTTGGCATAATCATCTTTGCTGCTGTCATGGCTACACTTGGGTTTCAGGTATTGATCCAGGCCGTAGAACAATTAATTACAGCTGATCCCACTGAAAGTTTGACCTCAGATCAATTGGCATGGTTGTATGGAATCATGTTGTTTGCTACTGTGGTAAAACTTGCACTGTGGCTCTATTGCAGAACCTCAGGAAATAAGATTGTCCGTGCCTATGCAGAGGATCACTATTTTGATGTGGTCACTAATGTAGTGGGATTAGTTGCTGCTGTGCTTGCTGATAAGTATTACTGGTGGATTGATCCTACTGGTGCTATTATCCTTGCTCTGTATACGATCATAAATTGGTCCAAAACTGTCATGGAAAATGCAGTTTCGCTGGTGGGACAGTCAGCCCCTCCTGAATTCCTACAAATGTTGACATATGTTGTCATAAGGCATCCTCAAGTGAAGCGTGTTGACACAGTTCGTGCTTACACATTTGGTGTTCTTTATTTTGTGGAGGTTGACATTGAACTCCCAGAAGAATTACCCTTGAAAGAAGCACATGCCATTGGAGAGTCCCTCCAGATAAATCTTGAGAAGATTCCAGAAGTTGAGCGAGCATTTGTTCATCTTGACTTTGAATGCGACCACAAACCAGAGCACAATGTACTCGTCAAGCTTCCAAGCAGTCAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

431

Amino Acids

48.33

Weight (kDa)

4.91

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	139 - 332	1.7e-27	Cation efflux transmembrane domain
ZT_dimer	PF16916	337 - 411	8.5e-08	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58060 AT3G58060
fragaria_vesca	FvH4_3g44550 FvH4_3g44550 FvH4_3g44550
malus_domestica	MD03G1011700.v1.1 MD11G1014600.v1.1
prunus_persica	Prupe.6G012100_v2.0.a1 Prupe.7G081200_v2.0.a1
pyrus_communis	pycom11g00990
rosa_chinensis	RchiOBHm_Chr3g0479221 RchiOBHm_Chr5g0081261
rosa_laevigata	RLG00000023593 RLG00000036922
rosa_multiflora	Rmu_sc0007768.1_g000006 Rmu_ssc0000432.1_g000058
rosa_roxburghii	Rroxscaffold_1G00002230 Rroxscaffold_6G00402530
rosa_rugosa	Rorug03G0172300 Rorug03G0172800 Rorug03G0172800 Rorug05G0475200 Rorug05G0475300
rosa_samantha	Rh3AG223900 Rh3BG256800 Rh3CG252500 Rh3DG248700 Rh5AG526900 Rh5BG551100 Rh5CG574000 Rh5DG561100
rosa_wichuraiana	Rw3G020070 Rw3G020530 Rw5G048980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccI	GTMKAC	2 cut(s)	135, 944
AciI	CCGC	3 cut(s)	348, 477, 530
AclI	AACGTT	1 cut(s)	570
AclWI	GGATC	4 cut(s)	664, 695, 843, 908
AcsI	RAATTY	2 cut(s)	19, 1016
AfaI	GTAC	1 cut(s)	1266
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	4 cut(s)	501, 1127, 1150, 1238
AjnI	CCWGG	2 cut(s)	555, 672
AluBI	AGCT	2 cut(s)	698, 1276
AluI	AGCT	2 cut(s)	698, 1276
Alw21I	GWGCWC	1 cut(s)	1260
AlwI	GGATC	4 cut(s)	664, 695, 843, 908
AoxI	GGCC	3 cut(s)	12, 240, 675
ApeKI	GCWGC	4 cut(s)	494, 610, 635, 878
ApoI	RAATTY	2 cut(s)	19, 1016
AseI	ATTAAT	1 cut(s)	689
Asp700I	GAANNNNTTC	1 cut(s)	55
AspS9I	GGNCC	3 cut(s)	12, 480, 960
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	480, 960
AxyI	CCTNAGG	1 cut(s)	802
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
Bbv12I	GWGCWC	1 cut(s)	1260
BbvI	GCAGC	4 cut(s)	481, 622, 622, 865
BceAI	ACGGC	1 cut(s)	662
BciT130I	CCWGG	2 cut(s)	557, 674
BfaI	CTAG	2 cut(s)	506, 518
BfmI	CTRYAG	1 cut(s)	339
BfrI	CTTAAG	1 cut(s)	452
BglI	GCCNNNNNGGC	1 cut(s)	239
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	5 cut(s)	348, 495, 611, 636, 879
BlsI	GCNGC	5 cut(s)	349, 496, 612, 637, 880
Bme1390I	CCNGG	2 cut(s)	557, 674
Bme18I	GGWCC	2 cut(s)	480, 960
BmgT120I	GGNCC	3 cut(s)	12, 480, 960
BmiI	GGNNCC	3 cut(s)	13, 116, 481
BmrFI	CCNGG	2 cut(s)	557, 674
BmsI	GCATC	1 cut(s)	1060
BplI	GAGNNNNNCTC	2 cut(s)	1161, 1193
BpmI	CTGGAG	1 cut(s)	1163
BpuEI	CTTGAG	2 cut(s)	1041, 1211
BsaJI	CCNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	908, 925
Bse21I	CCTNAGG	1 cut(s)	802
Bse3DI	GCAATG	3 cut(s)	417, 489, 567
BseBI	CCWGG	2 cut(s)	557, 674
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	1051
BseMI	GCAATG	3 cut(s)	417, 489, 567
BseMII	CTCAG	3 cut(s)	342, 735, 816
BseNI	ACTGG	2 cut(s)	908, 925
BseXI	GCAGC	4 cut(s)	481, 622, 622, 865
BsgI	GTGCAG	1 cut(s)	629
BshFI	GGCC	3 cut(s)	14, 242, 677
BsiHKAI	GWGCWC	1 cut(s)	1260
BslFI	GGGAC	2 cut(s)	1011, 1159
BsmFI	GGGAC	2 cut(s)	1011, 1159
BsmI	GAATGC	1 cut(s)	1244
BsnI	GGCC	3 cut(s)	14, 242, 677
Bsp1286I	GDGCHC	1 cut(s)	1260
Bsp143I	GATC	7 cut(s)	520, 669, 700, 724, 835, 913, 948
BspACI	CCGC	3 cut(s)	348, 477, 530
BspANI	GGCC	3 cut(s)	14, 242, 677
BspCNI	CTCAG	3 cut(s)	343, 734, 815
BspLI	GGNNCC	3 cut(s)	13, 116, 481
BspPI	GGATC	4 cut(s)	664, 695, 843, 908
BspTI	CTTAAG	1 cut(s)	452
BsrDI	GCAATG	3 cut(s)	417, 489, 567
BsrI	ACTGG	2 cut(s)	908, 925
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	7 cut(s)	520, 669, 700, 724, 835, 913, 948
BssNAI	GTATAC	2 cut(s)	136, 945
BssT1I	CCWWGG	1 cut(s)	223
Bst1107I	GTATAC	2 cut(s)	136, 945
Bst2UI	CCWGG	2 cut(s)	557, 674
Bst4CI	ACNGT	8 cut(s)	140, 340, 469, 766, 783, 970, 1002, 1078
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	888, 1215
BstDEI	CTNAG	4 cut(s)	215, 351, 721, 802
BstF5I	GGATG	1 cut(s)	1051
BstKTI	GATC	7 cut(s)	523, 672, 703, 727, 838, 916, 951
BstMBI	GATC	7 cut(s)	520, 669, 700, 724, 835, 913, 948
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 494, 644, 887
BstNI	CCWGG	2 cut(s)	557, 674
BstNSI	RCATGY	1 cut(s)	1163
BstSCI	CCNGG	2 cut(s)	555, 672
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	4 cut(s)	481, 622, 622, 865
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BstZ17I	GTATAC	2 cut(s)	136, 945
Bsu36I	CCTNAGG	1 cut(s)	802
BsuRI	GGCC	3 cut(s)	14, 242, 677
BtsCI	GGATG	1 cut(s)	1051
BtsIMutI	CAGTG	3 cut(s)	336, 705, 779
Cac8I	GCNNGC	2 cut(s)	888, 1215
Cfr13I	GGNCC	3 cut(s)	12, 480, 960
Csp6I	GTAC	1 cut(s)	1265
CviAII	CATG	7 cut(s)	401, 526, 643, 735, 751, 973, 1160
CviQI	GTAC	1 cut(s)	1265
DdeI	CTNAG	4 cut(s)	215, 351, 721, 802
DpnI	GATC	7 cut(s)	522, 671, 702, 726, 837, 915, 950
DpnII	GATC	7 cut(s)	520, 669, 700, 724, 835, 913, 948
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	480, 960
Eco81I	CCTNAGG	1 cut(s)	802
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	1016
EcoRII	CCWGG	2 cut(s)	555, 672
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	7 cut(s)	404, 529, 646, 738, 754, 976, 1163
FaqI	GGGAC	2 cut(s)	1011, 1159
FatI	CATG	7 cut(s)	400, 525, 642, 734, 750, 972, 1159
FauI	CCCGC	2 cut(s)	470, 523
FauNDI	CATATG	1 cut(s)	1036
FblI	GTMKAC	2 cut(s)	135, 944
Fnu4HI	GCNGC	5 cut(s)	348, 495, 611, 636, 879
FokI	GGATG	1 cut(s)	1038
Fsp4HI	GCNGC	5 cut(s)	348, 495, 611, 636, 879
FspBI	CTAG	2 cut(s)	506, 518
GluI	GCNGC	5 cut(s)	348, 495, 611, 636, 879
GsuI	CTGGAG	1 cut(s)	1163
HaeIII	GGCC	3 cut(s)	14, 242, 677
Hin1II	CATG	7 cut(s)	404, 529, 646, 738, 754, 976, 1163
HincII	GTYRAC	4 cut(s)	334, 1032, 1072, 1120
HindII	GTYRAC	4 cut(s)	334, 1032, 1072, 1120
HindIII	AAGCTT	1 cut(s)	1274
HinfI	GANTC	6 cut(s)	228, 353, 509, 747, 1172, 1198
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	7 cut(s)	136, 334, 549, 945, 1032, 1072, 1120
Hpy188I	TCNGA	3 cut(s)	111, 596, 724
Hpy188III	TCNNGA	6 cut(s)	804, 1013, 1180, 1190, 1202, 1229
Hpy8I	GTNNAC	7 cut(s)	136, 334, 549, 945, 1032, 1072, 1120
HpyAV	CCTTC	2 cut(s)	119, 277
HpyCH4III	ACNGT	8 cut(s)	140, 340, 469, 766, 783, 970, 1002, 1078
HpyCH4IV	ACGT	1 cut(s)	570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 494, 644, 887
HpyF3I	CTNAG	4 cut(s)	215, 351, 721, 802
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	7 cut(s)	404, 529, 646, 738, 754, 976, 1163
Kzo9I	GATC	7 cut(s)	520, 669, 700, 724, 835, 913, 948
Lsp1109I	GCAGC	4 cut(s)	481, 622, 622, 865
LweI	GCATC	1 cut(s)	1060
MaeI	CTAG	2 cut(s)	506, 518
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	3 cut(s)	73, 142, 853
MalI	GATC	7 cut(s)	522, 671, 702, 726, 837, 915, 950
MboI	GATC	7 cut(s)	520, 669, 700, 724, 835, 913, 948
MboII	GAAGA	5 cut(s)	173, 427, 577, 1148, 1207
MfeI	CAATTG	1 cut(s)	728
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	1 cut(s)	1260
MlyI	GAGTC	2 cut(s)	362, 1181
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	5 cut(s)	269, 315, 453, 573, 689
MspA1I	CMGCKG	2 cut(s)	350, 698
MspCI	CTTAAG	1 cut(s)	452
MspR9I	CCNGG	2 cut(s)	557, 674
MunI	CAATTG	1 cut(s)	728
Mva1269I	GAATGC	1 cut(s)	1244
MvaI	CCWGG	2 cut(s)	557, 674
MwoI	GCNNNNNNNGC	4 cut(s)	239, 494, 644, 887
NdeI	CATATG	1 cut(s)	1036
NdeII	GATC	7 cut(s)	520, 669, 700, 724, 835, 913, 948
NlaIII	CATG	7 cut(s)	404, 529, 646, 738, 754, 976, 1163
NlaIV	GGNNCC	3 cut(s)	13, 116, 481
NmuCI	GTSAC	2 cut(s)	73, 853
NspI	RCATGY	1 cut(s)	1163
PctI	GAATGC	1 cut(s)	1244
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	4 cut(s)	228, 509, 747, 1198
PkrI	GCNGC	5 cut(s)	349, 496, 612, 637, 880
PleI	GAGTC	2 cut(s)	361, 1180
PpsI	GAGTC	2 cut(s)	361, 1180
PshBI	ATTAAT	1 cut(s)	689
Psp1406I	AACGTT	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	555, 672
PspGI	CCWGG	2 cut(s)	555, 672
PspN4I	GGNNCC	3 cut(s)	13, 116, 481
PspPI	GGNCC	3 cut(s)	12, 480, 960
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	1 cut(s)	1266
RsaNI	GTAC	1 cut(s)	1265
SaqAI	TTAA	5 cut(s)	269, 315, 453, 573, 689
SatI	GCNGC	5 cut(s)	348, 495, 611, 636, 879
Sau3AI	GATC	7 cut(s)	520, 669, 700, 724, 835, 913, 948
Sau96I	GGNCC	3 cut(s)	12, 480, 960
SchI	GAGTC	2 cut(s)	362, 1181
ScrFI	CCNGG	2 cut(s)	557, 674
SduI	GDGCHC	1 cut(s)	1260
SetI	ASST	9 cut(s)	130, 558, 573, 666, 700, 722, 803, 1119, 1278
SfaNI	GCATC	1 cut(s)	1060
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	2 cut(s)	480, 960
SmlI	CTYRAG	3 cut(s)	452, 1056, 1190
SmoI	CTYRAG	3 cut(s)	452, 1056, 1190
SsiI	CCGC	3 cut(s)	348, 477, 530
SspMI	CTAG	2 cut(s)	506, 518
StyD4I	CCNGG	2 cut(s)	555, 672
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	8 cut(s)	140, 340, 469, 766, 783, 970, 1002, 1078
TaiI	ACGT	1 cut(s)	573
TatI	WGTACW	1 cut(s)	1264
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	4 cut(s)	228, 509, 747, 1198
Tru1I	TTAA	5 cut(s)	269, 315, 453, 573, 689
Tru9I	TTAA	5 cut(s)	269, 315, 453, 573, 689
TscAI	CASTG	3 cut(s)	343, 712, 786
TseFI	GTSAC	2 cut(s)	73, 853
TseI	GCWGC	4 cut(s)	494, 610, 635, 878
Tsp45I	GTSAC	2 cut(s)	73, 853
TspDTI	ATGAA	5 cut(s)	92, 417, 428, 578, 1214
TspGWI	ACGGA	1 cut(s)	809
TspRI	CASTG	3 cut(s)	343, 712, 786
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	480, 960
VspI	ATTAAT	1 cut(s)	689
XapI	RAATTY	2 cut(s)	19, 1016
XceI	RCATGY	1 cut(s)	1163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	970
XmiI	GTMKAC	2 cut(s)	135, 944
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	2 cut(s)	506, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.