Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007768.1

Orthogroup ID

OG0003838

Physical Location & Seq

Genomic Coordinates Forward (+)

25519 .. 29193

Gene Structure 3675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007768.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atggagaacaagtcggaatcgggtctgaaggcgtcgctgttgggaagcggtggacgtagtcggcgactgagtcggataaactcgtacagcaccctcgtaaacgacttcatttcgaggctgccaccgaaagtccgagctggtgttgaccccgagtcgccggtagtgattgactgctcacgtgcctcgggattaagcgaaggagagaaggaatactatgaaaaacaatttgcaacccttaaatcctttgaggaagttgacactgtagtcgccactgagggcattgatgaggaaaatcttgcagaacaagcacaacatgaaagagcaatgaagatttccaactttgcaaatataattctgttggcacttaagatttatgctactgtaaaaagtgggtccatagccattgctgcttcaacactagattctttactagatctcatggcgggtggcatactctggttcactcacctggcaatgaagaacgttaatatctaccactatcctattggaaaattgaggatgcagcctgttggcataatcatctttgctgctgtcatggctacacttgggtttcaggtattggtccaggctgtagaacaattaattacagctgatcccactgaaagtctgaccacagatcaattggtgtggttgtatggaatcatgttgtttgctactgtggtaaaacttgcactgtggctctattgcagaacctcaggaaataagattgtccgtgcctatgcagaggatcactattttgatgtggtaactaatgtagtgggattagttgctgctgtacttgctgataagtattactggtggattgatcctactggtgctattatccttgctctgtatacgatcataaattggtccaaaactgtcatggaaaatgcagtttcgctggtgggacagtcagcccctcctgaattcctacaaatgttgacatatgttgtcataaggcaccctcaagtgaagcgtgttgacacagttcgtgcttacacatttggtgttctttattttgtggaggttgacattgaactcccagaagaattacccttgaaagaagcacatgccattggagagtccctccagataaatcttgagaagcttccagaagttgagcgagcatttgttcatcttgactttgaatgcgaccacaaaccagagcacaatgtactcgtcaagcttccaagcagtcagccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

402

Amino Acids

44.75

Weight (kDa)

5.3

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58060 AT3G58060
fragaria_vesca	FvH4_3g44550 FvH4_3g44550 FvH4_3g44550
malus_domestica	MD03G1011700.v1.1 MD11G1014600.v1.1
prunus_persica	Prupe.6G012100_v2.0.a1 Prupe.7G081200_v2.0.a1
pyrus_communis	pycom11g00990
rosa_chinensis	RchiOBHm_Chr3g0479221 RchiOBHm_Chr5g0081261
rosa_laevigata	RLG00000023593 RLG00000036922
rosa_multiflora	Rmu_sc0007768.1_g000006 Rmu_ssc0000432.1_g000058
rosa_roxburghii	Rroxscaffold_1G00002230 Rroxscaffold_6G00402530
rosa_rugosa	Rorug03G0172300 Rorug03G0172800 Rorug03G0172800 Rorug05G0475200 Rorug05G0475300
rosa_samantha	Rh3AG223900 Rh3BG256800 Rh3CG252500 Rh3DG248700 Rh5AG526900 Rh5BG551100 Rh5CG574000 Rh5DG561100
rosa_wichuraiana	Rw3G020070 Rw3G020530 Rw5G048980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	963
AccI	GTMKAC	1 cut(s)	857
AciI	CCGC	2 cut(s)	48, 443
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	3 cut(s)	608, 756, 821
AcsI	RAATTY	1 cut(s)	929
AcuI	CTGAAG	1 cut(s)	47
AcvI	CACGTG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	3 cut(s)	86, 798, 1179
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	4 cut(s)	414, 1040, 1063, 1151
AhdI	GACNNNNNGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	468, 585
AluBI	AGCT	4 cut(s)	137, 611, 1111, 1189
AluI	AGCT	4 cut(s)	137, 611, 1111, 1189
Alw21I	GWGCWC	1 cut(s)	1173
AlwI	GGATC	3 cut(s)	608, 756, 821
Ama87I	CYCGRG	2 cut(s)	149, 184
ApeKI	GCWGC	5 cut(s)	118, 407, 523, 548, 791
ApoI	RAATTY	1 cut(s)	929
AseI	ATTAAT	1 cut(s)	602
AspS9I	GGNCC	3 cut(s)	393, 583, 873
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	2 cut(s)	149, 184
AvaII	GGWCC	3 cut(s)	393, 583, 873
AxyI	CCTNAGG	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	963
BbrPI	CACGTG	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	1173
BbvI	GCAGC	5 cut(s)	105, 394, 535, 535, 778
BciT130I	CCWGG	2 cut(s)	470, 587
BfaI	CTAG	2 cut(s)	419, 431
BfmI	CTRYAG	2 cut(s)	261, 591
BfrI	CTTAAG	1 cut(s)	365
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	5 cut(s)	119, 408, 524, 549, 792
BlsI	GCNGC	5 cut(s)	120, 409, 525, 550, 793
Bme1390I	CCNGG	2 cut(s)	470, 587
Bme18I	GGWCC	3 cut(s)	393, 583, 873
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmeT110I	CYCGRG	2 cut(s)	149, 184
BmgT120I	GGNCC	3 cut(s)	393, 583, 873
BmiI	GGNNCC	2 cut(s)	394, 965
BmrFI	CCNGG	2 cut(s)	470, 587
BmsI	GCATC	1 cut(s)	510
BplI	GAGNNNNNCTC	2 cut(s)	1074, 1106
BpmI	CTGGAG	1 cut(s)	1076
BpuEI	CTTGAG	2 cut(s)	954, 1124
BsaAI	YACGTR	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	821, 838
Bse21I	CCTNAGG	1 cut(s)	715
Bse3DI	GCAATG	3 cut(s)	330, 402, 480
BseBI	CCWGG	2 cut(s)	470, 587
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	525
BseMI	GCAATG	3 cut(s)	330, 402, 480
BseMII	CTCAG	3 cut(s)	59, 264, 729
BseNI	ACTGG	2 cut(s)	821, 838
BseXI	GCAGC	5 cut(s)	105, 394, 535, 535, 778
BshNI	GGYRCC	1 cut(s)	963
BsiHKAI	GWGCWC	1 cut(s)	1173
BsiHKCI	CYCGRG	2 cut(s)	149, 184
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	924, 1072
BsmFI	GGGAC	2 cut(s)	924, 1072
BsmI	GAATGC	1 cut(s)	1157
BsoBI	CYCGRG	2 cut(s)	149, 184
Bsp1286I	GDGCHC	1 cut(s)	1173
Bsp143I	GATC	6 cut(s)	433, 613, 637, 748, 826, 861
BspACI	CCGC	2 cut(s)	48, 443
BspCNI	CTCAG	3 cut(s)	60, 265, 728
BspLI	GGNNCC	2 cut(s)	394, 965
BspPI	GGATC	3 cut(s)	608, 756, 821
BspT107I	GGYRCC	1 cut(s)	963
BspTI	CTTAAG	1 cut(s)	365
BsrDI	GCAATG	3 cut(s)	330, 402, 480
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	821, 838
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	6 cut(s)	433, 613, 637, 748, 826, 861
BssNAI	GTATAC	1 cut(s)	858
BssNI	GRCGYC	1 cut(s)	32
Bst1107I	GTATAC	1 cut(s)	858
Bst2UI	CCWGG	2 cut(s)	470, 587
Bst4CI	ACNGT	7 cut(s)	262, 382, 679, 696, 883, 915, 991
BstACI	GRCGYC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	1128
BstDEI	CTNAG	3 cut(s)	68, 273, 715
BstF5I	GGATG	1 cut(s)	525
BstKTI	GATC	6 cut(s)	436, 616, 640, 751, 829, 864
BstMBI	GATC	6 cut(s)	433, 613, 637, 748, 826, 861
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 407, 557, 800
BstNI	CCWGG	2 cut(s)	470, 587
BstNSI	RCATGY	1 cut(s)	1076
BstSCI	CCNGG	2 cut(s)	468, 585
BstSFI	CTRYAG	2 cut(s)	261, 591
BstV1I	GCAGC	5 cut(s)	105, 394, 535, 535, 778
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BstZ17I	GTATAC	1 cut(s)	858
Bsu36I	CCTNAGG	1 cut(s)	715
BtsCI	GGATG	1 cut(s)	525
BtsIMutI	CAGTG	4 cut(s)	258, 270, 618, 692
Cac8I	GCNNGC	1 cut(s)	1128
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	393, 583, 873
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	3 cut(s)	85, 797, 1178
CspCI	CAANNNNNGTGG	2 cut(s)	629, 664
CviAII	CATG	6 cut(s)	314, 439, 556, 664, 886, 1073
CviQI	GTAC	3 cut(s)	85, 797, 1178
DdeI	CTNAG	3 cut(s)	68, 273, 715
DpnI	GATC	6 cut(s)	435, 615, 639, 750, 828, 863
DpnII	GATC	6 cut(s)	433, 613, 637, 748, 826, 861
DrdI	GACNNNNNNGTC	1 cut(s)	263
DriI	GACNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1105I	GACNNNNNGTC	1 cut(s)	151
Eco47I	GGWCC	3 cut(s)	393, 583, 873
Eco57I	CTGAAG	1 cut(s)	47
Eco72I	CACGTG	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	715
Eco88I	CYCGRG	2 cut(s)	149, 184
EcoRI	GAATTC	1 cut(s)	929
EcoRII	CCWGG	2 cut(s)	468, 585
FaeI	CATG	6 cut(s)	317, 442, 559, 667, 889, 1076
FaqI	GGGAC	2 cut(s)	924, 1072
FatI	CATG	6 cut(s)	313, 438, 555, 663, 885, 1072
FauI	CCCGC	1 cut(s)	436
FauNDI	CATATG	1 cut(s)	949
FblI	GTMKAC	1 cut(s)	857
Fnu4HI	GCNGC	5 cut(s)	119, 408, 524, 549, 792
FokI	GGATG	1 cut(s)	532
Fsp4HI	GCNGC	5 cut(s)	119, 408, 524, 549, 792
FspBI	CTAG	2 cut(s)	419, 431
GluI	GCNGC	5 cut(s)	119, 408, 524, 549, 792
GsuI	CTGGAG	1 cut(s)	1076
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	6 cut(s)	317, 442, 559, 667, 889, 1076
HincII	GTYRAC	5 cut(s)	145, 256, 945, 985, 1033
HindII	GTYRAC	5 cut(s)	145, 256, 945, 985, 1033
HindIII	AAGCTT	2 cut(s)	1109, 1187
HinfI	GANTC	6 cut(s)	17, 70, 152, 422, 660, 1085
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	9 cut(s)	53, 100, 145, 256, 462, 858, 945, 985, 1033
Hpy188I	TCNGA	5 cut(s)	16, 27, 75, 134, 630
Hpy188III	TCNNGA	7 cut(s)	186, 717, 926, 1093, 1103, 1115, 1142
Hpy8I	GTNNAC	9 cut(s)	53, 100, 145, 256, 462, 858, 945, 985, 1033
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	22, 191, 199
HpyCH4III	ACNGT	7 cut(s)	262, 382, 679, 696, 883, 915, 991
HpyCH4IV	ACGT	3 cut(s)	55, 178, 483
HpyCH4V	TGCA	8 cut(s)	230, 299, 344, 523, 692, 708, 743, 896
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 407, 557, 800
HpyF3I	CTNAG	3 cut(s)	68, 273, 715
HpySE526I	ACGT	3 cut(s)	55, 178, 483
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	6 cut(s)	317, 442, 559, 667, 889, 1076
Kzo9I	GATC	6 cut(s)	433, 613, 637, 748, 826, 861
Lsp1109I	GCAGC	5 cut(s)	105, 394, 535, 535, 778
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	2 cut(s)	419, 431
MaeII	ACGT	3 cut(s)	55, 178, 483
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	6 cut(s)	435, 615, 639, 750, 828, 863
MboI	GATC	6 cut(s)	433, 613, 637, 748, 826, 861
MboII	GAAGA	3 cut(s)	340, 490, 1061
MfeI	CAATTG	1 cut(s)	641
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	1173
MluCI	AATT	9 cut(s)	224, 351, 512, 599, 603, 641, 868, 929, 1052
MlyI	GAGTC	3 cut(s)	79, 161, 1094
MmeI	TCCRAC	2 cut(s)	53, 360
MseI	TTAA	5 cut(s)	191, 237, 366, 486, 602
MspA1I	CMGCKG	1 cut(s)	611
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	470, 587
MunI	CAATTG	1 cut(s)	641
Mva1269I	GAATGC	1 cut(s)	1157
MvaI	CCWGG	2 cut(s)	470, 587
MwoI	GCNNNNNNNGC	4 cut(s)	305, 407, 557, 800
NdeI	CATATG	1 cut(s)	949
NdeII	GATC	6 cut(s)	433, 613, 637, 748, 826, 861
NlaIII	CATG	6 cut(s)	317, 442, 559, 667, 889, 1076
NlaIV	GGNNCC	2 cut(s)	394, 965
NspI	RCATGY	1 cut(s)	1076
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	1157
PfeI	GAWTC	3 cut(s)	17, 422, 660
PflFI	GACNNNGTC	2 cut(s)	57, 69
PkrI	GCNGC	5 cut(s)	120, 409, 525, 550, 793
PleI	GAGTC	3 cut(s)	78, 160, 1093
PmaCI	CACGTG	1 cut(s)	179
PmlI	CACGTG	1 cut(s)	179
PpsI	GAGTC	3 cut(s)	78, 160, 1093
Ppu21I	YACGTR	1 cut(s)	179
PshBI	ATTAAT	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	468, 585
PspCI	CACGTG	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	468, 585
PspN4I	GGNNCC	2 cut(s)	394, 965
PspPI	GGNCC	3 cut(s)	393, 583, 873
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	2 cut(s)	57, 69
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	3 cut(s)	86, 798, 1179
RsaNI	GTAC	3 cut(s)	85, 797, 1178
SaqAI	TTAA	5 cut(s)	191, 237, 366, 486, 602
SatI	GCNGC	5 cut(s)	119, 408, 524, 549, 792
Sau3AI	GATC	6 cut(s)	433, 613, 637, 748, 826, 861
Sau96I	GGNCC	3 cut(s)	393, 583, 873
SchI	GAGTC	3 cut(s)	79, 161, 1094
ScrFI	CCNGG	2 cut(s)	470, 587
SduI	GDGCHC	1 cut(s)	1173
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	2 cut(s)	261, 591
SinI	GGWCC	3 cut(s)	393, 583, 873
SmlI	CTYRAG	3 cut(s)	365, 969, 1103
SmoI	CTYRAG	3 cut(s)	365, 969, 1103
Sse9I	AATT	9 cut(s)	224, 351, 512, 599, 603, 641, 868, 929, 1052
SsiI	CCGC	2 cut(s)	48, 443
SspMI	CTAG	2 cut(s)	419, 431
StyD4I	CCNGG	2 cut(s)	468, 585
TaaI	ACNGT	7 cut(s)	262, 382, 679, 696, 883, 915, 991
TaiI	ACGT	3 cut(s)	58, 181, 486
TaqI	TCGA	1 cut(s)	113
TasI	AATT	9 cut(s)	224, 351, 512, 599, 603, 641, 868, 929, 1052
TatI	WGTACW	2 cut(s)	796, 1177
TfiI	GAWTC	3 cut(s)	17, 422, 660
Tru1I	TTAA	5 cut(s)	191, 237, 366, 486, 602
Tru9I	TTAA	5 cut(s)	191, 237, 366, 486, 602
TscAI	CASTG	4 cut(s)	265, 277, 625, 699
TseI	GCWGC	5 cut(s)	118, 407, 523, 548, 791
TspDTI	ATGAA	6 cut(s)	97, 231, 330, 341, 491, 1127
TspGWI	ACGGA	1 cut(s)	722
TspRI	CASTG	4 cut(s)	265, 277, 625, 699
Tth111I	GACNNNGTC	2 cut(s)	57, 69
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	3 cut(s)	393, 583, 873
VspI	ATTAAT	1 cut(s)	602
XapI	RAATTY	1 cut(s)	929
XceI	RCATGY	1 cut(s)	1076
XcmI	CCANNNNNNNNNTGG	3 cut(s)	503, 640, 883
XmiI	GTMKAC	1 cut(s)	857
XspI	CTAG	2 cut(s)	419, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.