Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003838

Physical Location & Seq

Genomic Coordinates Reverse (-)

2644802 .. 2660179

Gene Structure 15378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGAGGACAAGTCAGATTCGGGTGTGAAAGCGTCGCTGTTGGGAAGCGGTGGACGTAGTCGGCGACTGAGTCGGAGAAACTCGTACAACACCCTCGTCAACGACTTCATTTCGAGGCTGCCACCGAAAGTCCGAGCTGGTCTTGACCCCGAGTCGCCGGAAGTGATCGACTGCTCACGTGCCTCGGGATTAAGCGAAGGTCCAGAGAAAAGGGTTGTGGTTTGTGTGAATGTGAAAGAGAAATGTTTGTTTGATAAAGATTTTGTGTTTGTTTGGTTTTATGAGGAACCAAAGAAAAGGGCTATGGTTAGAGTGAATGTGGAAGAGAACTTTTTCGCCTTTGTTTCGTTTTCTGAGGAACGAACAAAAGGAGAGAAGGACTACTACGAAAAACAATTTGCAACCCTTAAATCCTTTGAGGAAGTTGACACTGTAGTCGCCGCTGAGTGCATTGATGAGGAAAATCTTGCAGAACAAGCACAACATGAAAGAGCAATGAAGATTTCCAATTATGCAAATATAATTCTCTTGGCACTTAAGATTTATGCTACTGTAAAAAGCGGGTCCATAGCCATTGCTGCTTCAACACTAGATTCTTTACTAGATCTCATGGCGGGTGGCATACTCTGGTTCACTCACCTGGCAATGAAGAACGTTAATATCTACCACTATCCTATTGGAAAATTGAGGGTGCAGCCTGTTGGCATAATCATCTTTGCTGCTGTCATGGCTACACTTGGGTTTCAGGTATTGATCCAGGCCGTAGAACAATTAATTACAGCTGATCCAACTGAAAGTCTGACCTCAGATCAATTGGCATGGTTGTATGGAATCATGTTGTTTGCTACTGTGGTAAAACTTGCACTGTGGCTCTATTGCAGAACCTCAGGAAATAAGATTGTCCGTGCCTATGCAGAGGATCACTATTTTGATGTGGTCACTAATGTAGTGGGATTAGTTGCTGCTGTGCTTGCTGATAAGTATTACTGGTGGATTGATCCTACTGGTGCTATTATCCTTGCTCTGTATACGATCATAAATTGGTCCAAAACTGTCATGGAAAATGCAGTTTCGCTGGTGGGACAGTCAGCCCCTCCTGAATTCCTACAAATGTTGACGTATGTTGTCATAAGGCACCCTCAAGTGAAGCGTGTTGACACAGTTCGTGCTTACACATTTGGTGTTCTTTATTTTGTGGAGGTTGACATTGAACTCCCAGAAGAATTACCCTTGAAAGAAGCACATGCCATTGGAGAGTCCCTCCAGATAAATCTTGAGAAGCTTCCAGAAGTTGAGCGAGCATTTGTTCATCTTGACTTTGAATGCGACCACAAACCAGAGCACAATGTACTCGTCAAGCTTCCAAGCAGTCAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

459

Amino Acids

51.66

Weight (kDa)

5.38

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	167 - 360	1.9e-27	Cation efflux transmembrane domain
ZT_dimer	PF16916	365 - 439	1e-07	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58060 AT3G58060
fragaria_vesca	FvH4_3g44550 FvH4_3g44550 FvH4_3g44550
malus_domestica	MD03G1011700.v1.1 MD11G1014600.v1.1
prunus_persica	Prupe.6G012100_v2.0.a1 Prupe.7G081200_v2.0.a1
pyrus_communis	pycom11g00990
rosa_chinensis	RchiOBHm_Chr3g0479221 RchiOBHm_Chr5g0081261
rosa_laevigata	RLG00000023593 RLG00000036922
rosa_multiflora	Rmu_sc0007768.1_g000006 Rmu_ssc0000432.1_g000058
rosa_roxburghii	Rroxscaffold_1G00002230 Rroxscaffold_6G00402530
rosa_rugosa	Rorug03G0172300 Rorug03G0172800 Rorug03G0172800 Rorug05G0475200 Rorug05G0475300
rosa_samantha	Rh3AG223900 Rh3BG256800 Rh3CG252500 Rh3DG248700 Rh5AG526900 Rh5BG551100 Rh5CG574000 Rh5DG561100
rosa_wichuraiana	Rw3G020070 Rw3G020530 Rw5G048980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	1134
AccI	GTMKAC	1 cut(s)	1028
AciI	CCGC	4 cut(s)	48, 441, 561, 614
AclI	AACGTT	1 cut(s)	654
AclWI	GGATC	4 cut(s)	748, 779, 927, 992
AcsI	RAATTY	1 cut(s)	1100
AcvI	CACGTG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	86, 1350
AflII	CTTAAG	1 cut(s)	536
AgsI	TTSAA	4 cut(s)	585, 1211, 1234, 1322
AhdI	GACNNNNNGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	639, 756
AluBI	AGCT	4 cut(s)	137, 782, 1282, 1360
AluI	AGCT	4 cut(s)	137, 782, 1282, 1360
Alw21I	GWGCWC	1 cut(s)	1344
AlwI	GGATC	4 cut(s)	748, 779, 927, 992
Ama87I	CYCGRG	2 cut(s)	149, 184
AoxI	GGCC	1 cut(s)	759
ApeKI	GCWGC	5 cut(s)	118, 578, 694, 719, 962
ApoI	RAATTY	1 cut(s)	1100
AseI	ATTAAT	1 cut(s)	773
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	200, 564, 1044
AsuHPI	GGTGA	1 cut(s)	629
AvaI	CYCGRG	2 cut(s)	149, 184
AvaII	GGWCC	3 cut(s)	200, 564, 1044
AxyI	CCTNAGG	1 cut(s)	886
BanI	GGYRCC	1 cut(s)	1134
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BbrPI	CACGTG	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	1344
BbvI	GCAGC	5 cut(s)	105, 565, 706, 706, 949
BceAI	ACGGC	1 cut(s)	746
BciT130I	CCWGG	2 cut(s)	641, 758
BfaI	CTAG	2 cut(s)	590, 602
BfmI	CTRYAG	1 cut(s)	432
BfrI	CTTAAG	1 cut(s)	536
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	6 cut(s)	119, 441, 579, 695, 720, 963
BlsI	GCNGC	6 cut(s)	120, 442, 580, 696, 721, 964
Bme1390I	CCNGG	2 cut(s)	641, 758
Bme18I	GGWCC	3 cut(s)	200, 564, 1044
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmeT110I	CYCGRG	2 cut(s)	149, 184
BmgT120I	GGNCC	3 cut(s)	200, 564, 1044
BmiI	GGNNCC	3 cut(s)	288, 565, 1136
BmrFI	CCNGG	2 cut(s)	641, 758
BplI	GAGNNNNNCTC	2 cut(s)	1245, 1277
BpmI	CTGGAG	1 cut(s)	1247
BpuEI	CTTGAG	2 cut(s)	1125, 1295
BsaAI	YACGTR	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	992, 1009
Bse21I	CCTNAGG	1 cut(s)	886
Bse3DI	GCAATG	3 cut(s)	501, 573, 651
BseBI	CCWGG	2 cut(s)	641, 758
BseDI	CCNNGG	1 cut(s)	183
BseMI	GCAATG	3 cut(s)	501, 573, 651
BseMII	CTCAG	5 cut(s)	59, 345, 435, 819, 900
BseNI	ACTGG	2 cut(s)	992, 1009
BseXI	GCAGC	5 cut(s)	105, 565, 706, 706, 949
BsgI	GTGCAG	1 cut(s)	713
BshFI	GGCC	1 cut(s)	761
BshNI	GGYRCC	1 cut(s)	1134
BsiHKAI	GWGCWC	1 cut(s)	1344
BsiHKCI	CYCGRG	2 cut(s)	149, 184
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	1095, 1243
BsmFI	GGGAC	2 cut(s)	1095, 1243
BsmI	GAATGC	1 cut(s)	1328
BsnI	GGCC	1 cut(s)	761
BsoBI	CYCGRG	2 cut(s)	149, 184
Bsp1286I	GDGCHC	1 cut(s)	1344
Bsp143I	GATC	8 cut(s)	165, 604, 753, 784, 808, 919, 997, 1032
BspACI	CCGC	4 cut(s)	48, 441, 561, 614
BspANI	GGCC	1 cut(s)	761
BspCNI	CTCAG	5 cut(s)	60, 346, 436, 818, 899
BspLI	GGNNCC	3 cut(s)	288, 565, 1136
BspPI	GGATC	4 cut(s)	748, 779, 927, 992
BspT107I	GGYRCC	1 cut(s)	1134
BspTI	CTTAAG	1 cut(s)	536
BsrDI	GCAATG	3 cut(s)	501, 573, 651
BsrI	ACTGG	2 cut(s)	992, 1009
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	8 cut(s)	165, 604, 753, 784, 808, 919, 997, 1032
BssNAI	GTATAC	1 cut(s)	1029
Bst1107I	GTATAC	1 cut(s)	1029
Bst2UI	CCWGG	2 cut(s)	641, 758
Bst4CI	ACNGT	7 cut(s)	433, 553, 850, 867, 1054, 1086, 1162
Bst6I	CTCTTC	1 cut(s)	318
BstAFI	CTTAAG	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	972, 1299
BstDEI	CTNAG	5 cut(s)	68, 354, 444, 805, 886
BstKTI	GATC	8 cut(s)	168, 607, 756, 787, 811, 922, 1000, 1035
BstMBI	GATC	8 cut(s)	165, 604, 753, 784, 808, 919, 997, 1032
BstMWI	GCNNNNNNNGC	4 cut(s)	476, 578, 728, 971
BstNI	CCWGG	2 cut(s)	641, 758
BstNSI	RCATGY	1 cut(s)	1247
BstSCI	CCNGG	2 cut(s)	639, 756
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	5 cut(s)	105, 565, 706, 706, 949
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BstZ17I	GTATAC	1 cut(s)	1029
Bsu36I	CCTNAGG	1 cut(s)	886
BsuRI	GGCC	1 cut(s)	761
BtsIMutI	CAGTG	2 cut(s)	429, 863
Cac8I	GCNNGC	2 cut(s)	972, 1299
Cfr13I	GGNCC	3 cut(s)	200, 564, 1044
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	85, 1349
CviAII	CATG	7 cut(s)	485, 610, 727, 819, 835, 1057, 1244
CviQI	GTAC	2 cut(s)	85, 1349
DdeI	CTNAG	5 cut(s)	68, 354, 444, 805, 886
DpnI	GATC	8 cut(s)	167, 606, 755, 786, 810, 921, 999, 1034
DpnII	GATC	8 cut(s)	165, 604, 753, 784, 808, 919, 997, 1032
DrdI	GACNNNNNNGTC	1 cut(s)	434
DriI	GACNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	318
Eam1105I	GACNNNNNGTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	318
Eco47I	GGWCC	3 cut(s)	200, 564, 1044
Eco72I	CACGTG	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	886
Eco88I	CYCGRG	2 cut(s)	149, 184
EcoRI	GAATTC	1 cut(s)	1100
EcoRII	CCWGG	2 cut(s)	639, 756
FaeI	CATG	7 cut(s)	488, 613, 730, 822, 838, 1060, 1247
FaqI	GGGAC	2 cut(s)	1095, 1243
FatI	CATG	7 cut(s)	484, 609, 726, 818, 834, 1056, 1243
FauI	CCCGC	2 cut(s)	554, 607
FblI	GTMKAC	1 cut(s)	1028
Fnu4HI	GCNGC	6 cut(s)	119, 441, 579, 695, 720, 963
Fsp4HI	GCNGC	6 cut(s)	119, 441, 579, 695, 720, 963
FspBI	CTAG	2 cut(s)	590, 602
GluI	GCNGC	6 cut(s)	119, 441, 579, 695, 720, 963
GsuI	CTGGAG	1 cut(s)	1247
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	21
Hin1II	CATG	7 cut(s)	488, 613, 730, 822, 838, 1060, 1247
HincII	GTYRAC	5 cut(s)	100, 427, 1116, 1156, 1204
HindII	GTYRAC	5 cut(s)	100, 427, 1116, 1156, 1204
HindIII	AAGCTT	2 cut(s)	1280, 1358
HinfI	GANTC	6 cut(s)	17, 70, 152, 593, 831, 1256
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	8 cut(s)	53, 100, 427, 633, 1029, 1116, 1156, 1204
Hpy188I	TCNGA	6 cut(s)	16, 75, 134, 355, 801, 808
Hpy188III	TCNNGA	9 cut(s)	143, 186, 203, 888, 1097, 1264, 1274, 1286, 1313
Hpy8I	GTNNAC	8 cut(s)	53, 100, 427, 633, 1029, 1116, 1156, 1204
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	191, 370
HpyCH4III	ACNGT	7 cut(s)	433, 553, 850, 867, 1054, 1086, 1162
HpyCH4IV	ACGT	4 cut(s)	55, 178, 654, 1118
HpyCH4V	TGCA	9 cut(s)	401, 450, 470, 515, 694, 863, 879, 914, 1067
HpyF10VI	GCNNNNNNNGC	4 cut(s)	476, 578, 728, 971
HpyF3I	CTNAG	5 cut(s)	68, 354, 444, 805, 886
HpySE526I	ACGT	4 cut(s)	55, 178, 654, 1118
Hsp92II	CATG	7 cut(s)	488, 613, 730, 822, 838, 1060, 1247
Kzo9I	GATC	8 cut(s)	165, 604, 753, 784, 808, 919, 997, 1032
Lsp1109I	GCAGC	5 cut(s)	105, 565, 706, 706, 949
MaeI	CTAG	2 cut(s)	590, 602
MaeII	ACGT	4 cut(s)	55, 178, 654, 1118
MaeIII	GTNAC	1 cut(s)	937
MalI	GATC	8 cut(s)	167, 606, 755, 786, 810, 921, 999, 1034
MboI	GATC	8 cut(s)	165, 604, 753, 784, 808, 919, 997, 1032
MboII	GAAGA	4 cut(s)	335, 511, 661, 1232
MfeI	CAATTG	1 cut(s)	812
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	1344
MlyI	GAGTC	3 cut(s)	79, 161, 1265
MmeI	TCCRAC	2 cut(s)	53, 812
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	5 cut(s)	191, 408, 537, 657, 773
MspA1I	CMGCKG	2 cut(s)	443, 782
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	641, 758
MunI	CAATTG	1 cut(s)	812
Mva1269I	GAATGC	1 cut(s)	1328
MvaI	CCWGG	2 cut(s)	641, 758
MwoI	GCNNNNNNNGC	4 cut(s)	476, 578, 728, 971
NdeII	GATC	8 cut(s)	165, 604, 753, 784, 808, 919, 997, 1032
NlaIII	CATG	7 cut(s)	488, 613, 730, 822, 838, 1060, 1247
NlaIV	GGNNCC	3 cut(s)	288, 565, 1136
NmuCI	GTSAC	1 cut(s)	937
NspI	RCATGY	1 cut(s)	1247
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	1328
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	17, 593, 831
PflFI	GACNNNGTC	2 cut(s)	57, 69
PkrI	GCNGC	6 cut(s)	120, 442, 580, 696, 721, 964
PleI	GAGTC	3 cut(s)	78, 160, 1264
PmaCI	CACGTG	1 cut(s)	179
PmlI	CACGTG	1 cut(s)	179
PpsI	GAGTC	3 cut(s)	78, 160, 1264
Ppu21I	YACGTR	1 cut(s)	179
PshBI	ATTAAT	1 cut(s)	773
Psp1406I	AACGTT	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	639, 756
PspCI	CACGTG	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	639, 756
PspN4I	GGNNCC	3 cut(s)	288, 565, 1136
PspPI	GGNCC	3 cut(s)	200, 564, 1044
PsuI	RGATCY	1 cut(s)	604
PsyI	GACNNNGTC	2 cut(s)	57, 69
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	2 cut(s)	86, 1350
RsaNI	GTAC	2 cut(s)	85, 1349
SaqAI	TTAA	5 cut(s)	191, 408, 537, 657, 773
SatI	GCNGC	6 cut(s)	119, 441, 579, 695, 720, 963
Sau3AI	GATC	8 cut(s)	165, 604, 753, 784, 808, 919, 997, 1032
Sau96I	GGNCC	3 cut(s)	200, 564, 1044
SchI	GAGTC	3 cut(s)	79, 161, 1265
ScrFI	CCNGG	2 cut(s)	641, 758
SduI	GDGCHC	1 cut(s)	1344
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	3 cut(s)	200, 564, 1044
SmlI	CTYRAG	3 cut(s)	536, 1140, 1274
SmoI	CTYRAG	3 cut(s)	536, 1140, 1274
SsiI	CCGC	4 cut(s)	48, 441, 561, 614
SspMI	CTAG	2 cut(s)	590, 602
StyD4I	CCNGG	2 cut(s)	639, 756
TaaI	ACNGT	7 cut(s)	433, 553, 850, 867, 1054, 1086, 1162
TaiI	ACGT	4 cut(s)	58, 181, 657, 1121
TaqI	TCGA	2 cut(s)	113, 168
TatI	WGTACW	1 cut(s)	1348
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	3 cut(s)	17, 593, 831
Tru1I	TTAA	5 cut(s)	191, 408, 537, 657, 773
Tru9I	TTAA	5 cut(s)	191, 408, 537, 657, 773
TscAI	CASTG	2 cut(s)	436, 870
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	5 cut(s)	118, 578, 694, 719, 962
Tsp45I	GTSAC	1 cut(s)	937
TspDTI	ATGAA	5 cut(s)	97, 501, 512, 662, 1298
TspGWI	ACGGA	1 cut(s)	893
TspRI	CASTG	2 cut(s)	436, 870
Tth111I	GACNNNGTC	2 cut(s)	57, 69
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	3 cut(s)	200, 564, 1044
VspI	ATTAAT	1 cut(s)	773
XapI	RAATTY	1 cut(s)	1100
XceI	RCATGY	1 cut(s)	1247
XcmI	CCANNNNNNNNNTGG	2 cut(s)	674, 1054
XmiI	GTMKAC	1 cut(s)	1028
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	2 cut(s)	590, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.