Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003838

Physical Location & Seq

Genomic Coordinates Reverse (-)

24970680 .. 24973258

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAGGGAGGTTTGAAAACGAAACTGTTGCAAAGTGAGGGTGAAAAGCCCAACCAAAATGAGGTACTGCGAGACCGGAACTCAATTACTGCTCTCAGATGTGATTTCTTCTCCAACTTACCTGACAAAGTCCGGTCTGGCTTTGATCCTGAGGCCCCTTTTCATCTAAACCTCTCTAAAACTACTGGCTTGATAGAAGTGATAATGCAGATATATGCTACAGTGAAGAGTGGATCCTTAGCTATTGCAGCTTCAACTCTAGATTCTTTGCTAGATATTATGGCTGGTGGTATACTTTGGTTCACACACTTGTCTATGAAAAACATAAATATCTACGAGTATCCTATTGGAAAGTTGAGAGTGCAACCAGTAGGCATTGTCATATTTGCAGCTGTCATGGCTACTCTTGGCTTTCAAGTTCTTGTCCAGGCCTTAAAACAACTTATTGAAGACACACCCTCCGAAAAGATGACTTCAGAAAAGTTGATCTGGTTGTATGCAATCATGCTGATAGCTACTGGCGTCAAACTTGTTCTTTGGTGGTACTGTAGAAGCTCGGGAAACACAATCGTCCGTGCCTATGCCAAGGATCATTACTTTGATGTGGTCACAAATGTGGTTGGCTTGGTTGCTGCTGTTCTTGGAGATGAATTCTATTGGTGGATAGATCCAGTTGGTGCTATCGTCCTCGCATTCATAGGCTGCAACGATTTTGCAGTTGGAACACTAATGTACTCGTACTATCGATTTTTCCCACATACAGTCTCTTTGGTTGGACAATCAGCTCCTCCTGAAGTCTTGCAGAAACTCACATATCTCATCCTAAGGCACCACAGTTTAATCAGACGTGTCGACACAGTCAGGGCCTACACCTTTGGGGTTCTCTATTTTGTTGAGGTTGACATTGAACTGCCCGAAGATTTGCCATTGAAAGAAGCACATGCAATTGGAGAATCATTGCAAATAAAGATCGAAGAGCTCCCTGAAGTCGAGCGGGCATTTGTTCATCTGGATTATGAATGTAATCACAAGCCAGAGCACTCTGTTCTAAGTAGGCTCCCCAACAGCCATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0009705 GO:0009791 GO:0009845 GO:0010154 GO:0015075 GO:0015318 GO:0016020 GO:0022414 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0035618 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071421 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

358

Amino Acids

40.29

Weight (kDa)

5.78

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	67 - 233	1.8e-23	Cation efflux transmembrane domain
ZT_dimer	PF16916	263 - 338	3.5e-07	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58060 AT3G58060
fragaria_vesca	FvH4_3g44550 FvH4_3g44550 FvH4_3g44550
malus_domestica	MD03G1011700.v1.1 MD11G1014600.v1.1
prunus_persica	Prupe.6G012100_v2.0.a1 Prupe.7G081200_v2.0.a1
pyrus_communis	pycom11g00990
rosa_chinensis	RchiOBHm_Chr3g0479221 RchiOBHm_Chr5g0081261
rosa_laevigata	RLG00000023593 RLG00000036922
rosa_multiflora	Rmu_sc0007768.1_g000006 Rmu_ssc0000432.1_g000058
rosa_roxburghii	Rroxscaffold_1G00002230 Rroxscaffold_6G00402530
rosa_rugosa	Rorug03G0172300 Rorug03G0172800 Rorug03G0172800 Rorug05G0475200 Rorug05G0475300
rosa_samantha	Rh3AG223900 Rh3BG256800 Rh3CG252500 Rh3DG248700 Rh5AG526900 Rh5BG551100 Rh5CG574000 Rh5DG561100
rosa_wichuraiana	Rw3G020070 Rw3G020530 Rw5G048980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	828
AccBSI	CCGCTC	1 cut(s)	994
AccI	GTMKAC	2 cut(s)	292, 852
AciI	CCGC	1 cut(s)	994
AclWI	GGATC	5 cut(s)	140, 228, 241, 597, 662
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	3 cut(s)	459, 813, 1005
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	4 cut(s)	66, 545, 734, 740
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	6 cut(s)	16, 255, 416, 449, 908, 931
AjiI	CACGTC	1 cut(s)	848
AjnI	CCWGG	1 cut(s)	426
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	7 cut(s)	242, 251, 392, 515, 555, 785, 979
AluI	AGCT	7 cut(s)	242, 251, 392, 515, 555, 785, 979
Alw21I	GWGCWC	2 cut(s)	981, 1041
Alw26I	GTCTC	2 cut(s)	66, 769
AlwI	GGATC	5 cut(s)	140, 228, 241, 597, 662
Ama87I	CYCGRG	1 cut(s)	556
AoxI	GGCC	3 cut(s)	153, 429, 864
ApeKI	GCWGC	4 cut(s)	248, 389, 632, 702
ApoI	RAATTY	1 cut(s)	650
AspS9I	GGNCC	2 cut(s)	154, 864
AsuHPI	GGTGA	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	556
AxyI	CCTNAGG	2 cut(s)	150, 824
BamHI	GGATCC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	828
BanII	GRGCYC	1 cut(s)	981
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	2 cut(s)	981, 1041
BbvI	GCAGC	4 cut(s)	260, 401, 619, 689
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	66, 769
BfaI	CTAG	2 cut(s)	260, 272
BfmI	CTRYAG	2 cut(s)	219, 547
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	4 cut(s)	249, 390, 633, 703
BlsI	GCNGC	4 cut(s)	250, 391, 634, 704
Bme1390I	CCNGG	1 cut(s)	428
BmeT110I	CYCGRG	1 cut(s)	556
BmgBI	CACGTC	1 cut(s)	848
BmgT120I	GGNCC	2 cut(s)	154, 864
BmiI	GGNNCC	4 cut(s)	156, 235, 830, 1058
BmrFI	CCNGG	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	238
Bsa29I	ATCGAT	1 cut(s)	745
BsaHI	GRCGYC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	585
BsaWI	WCCGGW	2 cut(s)	75, 132
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	4 cut(s)	190, 368, 523, 671
Bse21I	CCTNAGG	2 cut(s)	150, 824
Bse3DI	GCAATG	1 cut(s)	956
BseBI	CCWGG	1 cut(s)	428
BseCI	ATCGAT	1 cut(s)	745
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	2 cut(s)	819, 1069
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	956
BseMII	CTCAG	2 cut(s)	109, 141
BseNI	ACTGG	4 cut(s)	190, 368, 523, 671
BseRI	GAGGAG	1 cut(s)	777
BseXI	GCAGC	4 cut(s)	260, 401, 619, 689
BshFI	GGCC	3 cut(s)	155, 431, 866
BshNI	GGYRCC	1 cut(s)	828
BshVI	ATCGAT	1 cut(s)	745
BsiHKAI	GWGCWC	2 cut(s)	981, 1041
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	76, 133
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	66, 769
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	3 cut(s)	155, 431, 866
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	2 cut(s)	981, 1041
Bsp143I	GATC	6 cut(s)	145, 233, 486, 589, 667, 969
BspACI	CCGC	1 cut(s)	994
BspANI	GGCC	3 cut(s)	155, 431, 866
BspCNI	CTCAG	2 cut(s)	108, 142
BspDI	ATCGAT	1 cut(s)	745
BspLI	GGNNCC	4 cut(s)	156, 235, 830, 1058
BspPI	GGATC	5 cut(s)	140, 228, 241, 597, 662
BspQI	GCTCTTC	1 cut(s)	969
BspT107I	GGYRCC	1 cut(s)	828
BspTNI	GGTCTC	1 cut(s)	66
BsrBI	CCGCTC	1 cut(s)	994
BsrDI	GCAATG	1 cut(s)	956
BsrI	ACTGG	4 cut(s)	190, 368, 523, 671
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	6 cut(s)	145, 233, 486, 589, 667, 969
BssNAI	GTATAC	1 cut(s)	293
BssNI	GRCGYC	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	585
Bst1107I	GTATAC	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	6 cut(s)	27, 223, 548, 763, 836, 859
Bst6I	CTCTTC	2 cut(s)	221, 969
BstACI	GRCGYC	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	996
BstDEI	CTNAG	5 cut(s)	95, 150, 238, 824, 1049
BstF5I	GGATG	2 cut(s)	819, 1069
BstKTI	GATC	6 cut(s)	148, 236, 489, 592, 670, 972
BstMAI	GTCTC	2 cut(s)	66, 769
BstMBI	GATC	6 cut(s)	145, 233, 486, 589, 667, 969
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 398
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	944
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	2 cut(s)	219, 547
BstV1I	GCAGC	4 cut(s)	260, 401, 619, 689
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	233, 667
BstYI	RGATCY	2 cut(s)	233, 667
BstZ17I	GTATAC	1 cut(s)	293
Bsu15I	ATCGAT	1 cut(s)	745
Bsu36I	CCTNAGG	2 cut(s)	150, 824
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	155, 431, 866
BsuTUI	ATCGAT	1 cut(s)	745
BtrI	CACGTC	1 cut(s)	848
BtsCI	GGATG	2 cut(s)	819, 1069
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	996
Cfr13I	GGNCC	2 cut(s)	154, 864
ClaI	ATCGAT	1 cut(s)	745
CseI	GACGC	1 cut(s)	511
Csp6I	GTAC	4 cut(s)	65, 544, 733, 739
CviAII	CATG	3 cut(s)	397, 505, 941
CviQI	GTAC	4 cut(s)	65, 544, 733, 739
DdeI	CTNAG	5 cut(s)	95, 150, 238, 824, 1049
DpnI	GATC	6 cut(s)	147, 235, 488, 591, 669, 971
DpnII	GATC	6 cut(s)	145, 233, 486, 589, 667, 969
Eam1104I	CTCTTC	2 cut(s)	221, 969
EarI	CTCTTC	2 cut(s)	221, 969
Ecl136II	GAGCTC	1 cut(s)	979
Eco130I	CCWWGG	1 cut(s)	585
Eco147I	AGGCCT	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	981
Eco31I	GGTCTC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	979
Eco57I	CTGAAG	3 cut(s)	459, 813, 1005
Eco81I	CCTNAGG	2 cut(s)	150, 824
Eco88I	CYCGRG	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	979
EcoO109I	RGGNCCY	2 cut(s)	154, 864
EcoRI	GAATTC	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	981
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	3 cut(s)	400, 508, 944
FatI	CATG	3 cut(s)	396, 504, 940
FauI	CCCGC	1 cut(s)	987
FblI	GTMKAC	2 cut(s)	292, 852
Fnu4HI	GCNGC	4 cut(s)	249, 390, 633, 703
FokI	GGATG	2 cut(s)	806, 1056
FriOI	GRGCYC	1 cut(s)	981
Fsp4HI	GCNGC	4 cut(s)	249, 390, 633, 703
FspBI	CTAG	2 cut(s)	260, 272
GluI	GCNGC	4 cut(s)	249, 390, 633, 703
HaeIII	GGCC	3 cut(s)	155, 431, 866
HapII	CCGG	2 cut(s)	76, 133
HgaI	GACGC	1 cut(s)	511
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	3 cut(s)	400, 508, 944
HincII	GTYRAC	2 cut(s)	853, 901
HindII	GTYRAC	2 cut(s)	853, 901
HinfI	GANTC	2 cut(s)	263, 953
HpaII	CCGG	2 cut(s)	76, 133
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	4 cut(s)	293, 303, 853, 901
Hpy188I	TCNGA	4 cut(s)	98, 463, 478, 845
Hpy188III	TCNNGA	5 cut(s)	149, 260, 558, 791, 1010
Hpy8I	GTNNAC	4 cut(s)	293, 303, 853, 901
HpyCH4III	ACNGT	6 cut(s)	27, 223, 548, 763, 836, 859
HpyCH4IV	ACGT	1 cut(s)	847
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 398
HpyF3I	CTNAG	5 cut(s)	95, 150, 238, 824, 1049
HpySE526I	ACGT	1 cut(s)	847
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	3 cut(s)	400, 508, 944
Kzo9I	GATC	6 cut(s)	145, 233, 486, 589, 667, 969
LguI	GCTCTTC	1 cut(s)	969
LmnI	GCTCC	3 cut(s)	790, 984, 1062
Lsp1109I	GCAGC	4 cut(s)	260, 401, 619, 689
MaeI	CTAG	2 cut(s)	260, 272
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	6 cut(s)	147, 235, 488, 591, 669, 971
MbiI	CCGCTC	1 cut(s)	994
MboI	GATC	6 cut(s)	145, 233, 486, 589, 667, 969
MboII	GAAGA	5 cut(s)	100, 238, 461, 929, 986
MfeI	CAATTG	1 cut(s)	945
MflI	RGATCY	2 cut(s)	233, 667
MhlI	GDGCHC	2 cut(s)	981, 1041
MluCI	AATT	3 cut(s)	84, 650, 945
MmeI	TCCRAC	3 cut(s)	138, 700, 754
MnlI	CCTC	8 cut(s)	31, 55, 145, 182, 469, 698, 798, 889
MseI	TTAA	2 cut(s)	434, 839
MslI	CAYNNNNRTG	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	2 cut(s)	76, 133
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	945
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	248, 398
NdeII	GATC	6 cut(s)	145, 233, 486, 589, 667, 969
NlaIII	CATG	3 cut(s)	400, 508, 944
NlaIV	GGNNCC	4 cut(s)	156, 235, 830, 1058
NmuCI	GTSAC	1 cut(s)	607
NspI	RCATGY	1 cut(s)	944
OliI	CACNNNNGTG	1 cut(s)	614
PceI	AGGCCT	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	969
PctI	GAATGC	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	263, 953
PflFI	GACNNNGTC	2 cut(s)	128, 857
PkrI	GCNGC	4 cut(s)	250, 391, 634, 704
Psp124BI	GAGCTC	1 cut(s)	981
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	4 cut(s)	156, 235, 830, 1058
PspPI	GGNCC	2 cut(s)	154, 864
PsuI	RGATCY	2 cut(s)	233, 667
PsyI	GACNNNGTC	2 cut(s)	128, 857
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	4 cut(s)	66, 545, 734, 740
RsaNI	GTAC	4 cut(s)	65, 544, 733, 739
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	981
SalI	GTCGAC	1 cut(s)	851
SapI	GCTCTTC	1 cut(s)	969
SaqAI	TTAA	2 cut(s)	434, 839
SatI	GCNGC	4 cut(s)	249, 390, 633, 703
Sau3AI	GATC	6 cut(s)	145, 233, 486, 589, 667, 969
Sau96I	GGNCC	2 cut(s)	154, 864
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	981, 1041
SfcI	CTRYAG	2 cut(s)	219, 547
SmiMI	CAYNNNNRTG	1 cut(s)	614
Sse9I	AATT	3 cut(s)	84, 650, 945
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	1 cut(s)	994
SspMI	CTAG	2 cut(s)	260, 272
SstI	GAGCTC	1 cut(s)	981
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	6 cut(s)	27, 223, 548, 763, 836, 859
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	4 cut(s)	745, 852, 972, 990
TasI	AATT	3 cut(s)	84, 650, 945
TatI	WGTACW	1 cut(s)	732
TfiI	GAWTC	2 cut(s)	263, 953
Tru1I	TTAA	2 cut(s)	434, 839
Tru9I	TTAA	2 cut(s)	434, 839
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	4 cut(s)	248, 389, 632, 702
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	6 cut(s)	152, 332, 663, 685, 995, 1032
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	228
Tth111I	GACNNNGTC	2 cut(s)	128, 857
XapI	RAATTY	1 cut(s)	650
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	1 cut(s)	944
XmiI	GTMKAC	2 cut(s)	292, 852
XspI	CTAG	2 cut(s)	260, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.