Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003838

Physical Location & Seq

Genomic Coordinates Forward (+)

87582304 .. 87585831

Gene Structure 3528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG551100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGAGGACAAGTCGGATTCGGGTGTGAAGGCGTCGCTGTTGGGCAGCGGTGGACGTAGTCGGCGACTGAGTCGCAGAAACTCGTACAACACCCTCGTTTACGACTTCGTTTCGAGGCTGCCACCGAAAGTCCGAGCTGGTCTTGACCCCGAGTCGCCGGAAGTGATCGACTGCTCACGTGCCTCGGGATTAAGCGAAGGAGAGAAGGACTACTACGAAAAACAATTTGCAACCCTTAAATCCTTTGAGGAAGTTGACACTGTAGTCGCCGCTGAGTCCATTGATGAGGAAAATGAGGAAAATCTTGCAGAACAAGGACAACATGAAAGAGCAATGAAGATTTCCAATTATGCAAATATAATTCTCTTGGCACTTAAGATTTATGCTACTGTAAAAAGCGGGTCCATAGCCATTGCTGCTTCAACACTAGATTCTTTACTAGATCTCATGGCGGGTGGCATACTCTGGTTCACTCACCTGGCAATGAAGAACGTTAATATCTACCACTATCCTATCGGAAAATTGAGGGTGCAGCCTGTTGGCATAATCATCTTTGCTGCTGTCATGGCTACACTTGGGTTTCAGGTATTGATCCAGGCCGTAGAACAATTAATTACAGCTGATCCCACTGAAAGTTTGACCTCAGATCAATTGGCATGGTTGTATGGAATCATGTTGTTTGCTACTGTGGTAAAACTTGCACTGTGGCTCTATTGCAGAACCTCAGGAAATAAGATTGTCCGTGCCTATGCAGAGGATCACTATTTTGATGTGGTCACTAATGTAGTGGGATTAGTTGCTGCTGTGCTTGCTGATAAGTATTACTGGTGGATTGATCCTACTGGTGCTATTATCCTTGCTCTGTATACGATCATAAATTGGTCCAAAACTGTCATGGAAAATGCAGTTTCGCTGGTGGGACAGTCAGCCCCTCCTGAATTCCTACAAATGTTGACATATGTTGTCATAAGGCATCCTCAAGTGAAGCGTGTTGACACAGTTCGTGCTTACACATTTGGTGTTCTTTATTTTGTGGAGGTTGACATTGAACTCCCAGAAGAATTACCCTTGAAAGAAGCACATGCCATTGGAGAGTCCCTCCAGATAAATCTTGAGAAGATTCCAGAAGTTGAGCGAGCATTTGTTCATCTTGACTTTGAATGCGACCACAAACCAGAGCACAATGTACTCGTCAAGCTTCCAAGCAGTCAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

405

Amino Acids

45.17

Weight (kDa)

5.12

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	113 - 306	1.4e-27	Cation efflux transmembrane domain
ZT_dimer	PF16916	311 - 385	7.7e-08	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58060 AT3G58060
fragaria_vesca	FvH4_3g44550 FvH4_3g44550 FvH4_3g44550
malus_domestica	MD03G1011700.v1.1 MD11G1014600.v1.1
prunus_persica	Prupe.6G012100_v2.0.a1 Prupe.7G081200_v2.0.a1
pyrus_communis	pycom11g00990
rosa_chinensis	RchiOBHm_Chr3g0479221 RchiOBHm_Chr5g0081261
rosa_laevigata	RLG00000023593 RLG00000036922
rosa_multiflora	Rmu_sc0007768.1_g000006 Rmu_ssc0000432.1_g000058
rosa_roxburghii	Rroxscaffold_1G00002230 Rroxscaffold_6G00402530
rosa_rugosa	Rorug03G0172300 Rorug03G0172800 Rorug03G0172800 Rorug05G0475200 Rorug05G0475300
rosa_samantha	Rh3AG223900 Rh3BG256800 Rh3CG252500 Rh3DG248700 Rh5AG526900 Rh5BG551100 Rh5CG574000 Rh5DG561100
rosa_wichuraiana	Rw3G020070 Rw3G020530 Rw5G048980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	866
AciI	CCGC	4 cut(s)	48, 270, 399, 452
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	4 cut(s)	586, 617, 765, 830
AcsI	RAATTY	1 cut(s)	938
AcvI	CACGTG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	2 cut(s)	86, 1188
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	423, 1049, 1072, 1160
AhdI	GACNNNNNGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	477, 594
AluBI	AGCT	3 cut(s)	137, 620, 1198
AluI	AGCT	3 cut(s)	137, 620, 1198
Alw21I	GWGCWC	1 cut(s)	1182
AlwI	GGATC	4 cut(s)	586, 617, 765, 830
Ama87I	CYCGRG	2 cut(s)	149, 184
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	6 cut(s)	45, 118, 416, 532, 557, 800
ApoI	RAATTY	1 cut(s)	938
AseI	ATTAAT	1 cut(s)	611
AspS9I	GGNCC	2 cut(s)	402, 882
AsuHPI	GGTGA	1 cut(s)	467
AvaI	CYCGRG	2 cut(s)	149, 184
AvaII	GGWCC	2 cut(s)	402, 882
AxyI	CCTNAGG	1 cut(s)	724
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BbrPI	CACGTG	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	1182
BbvI	GCAGC	6 cut(s)	57, 105, 403, 544, 544, 787
BceAI	ACGGC	1 cut(s)	584
BciT130I	CCWGG	2 cut(s)	479, 596
BfaI	CTAG	2 cut(s)	428, 440
BfmI	CTRYAG	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	374
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	7 cut(s)	46, 119, 270, 417, 533, 558, 801
BlsI	GCNGC	7 cut(s)	47, 120, 271, 418, 534, 559, 802
Bme1390I	CCNGG	2 cut(s)	479, 596
Bme18I	GGWCC	2 cut(s)	402, 882
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmeT110I	CYCGRG	2 cut(s)	149, 184
BmgT120I	GGNCC	2 cut(s)	402, 882
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	479, 596
BmsI	GCATC	1 cut(s)	982
BplI	GAGNNNNNCTC	2 cut(s)	1083, 1115
BpmI	CTGGAG	1 cut(s)	1085
BpuEI	CTTGAG	2 cut(s)	963, 1133
BsaAI	YACGTR	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	830, 847
Bse21I	CCTNAGG	1 cut(s)	724
Bse3DI	GCAATG	3 cut(s)	339, 411, 489
BseBI	CCWGG	2 cut(s)	479, 596
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	973
BseMI	GCAATG	3 cut(s)	339, 411, 489
BseMII	CTCAG	4 cut(s)	59, 264, 657, 738
BseNI	ACTGG	2 cut(s)	830, 847
BseXI	GCAGC	6 cut(s)	57, 105, 403, 544, 544, 787
BsgI	GTGCAG	1 cut(s)	551
BshFI	GGCC	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	1182
BsiHKCI	CYCGRG	2 cut(s)	149, 184
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	933, 1081
BsmFI	GGGAC	2 cut(s)	933, 1081
BsmI	GAATGC	1 cut(s)	1166
BsnI	GGCC	1 cut(s)	599
BsoBI	CYCGRG	2 cut(s)	149, 184
Bsp1286I	GDGCHC	1 cut(s)	1182
Bsp143I	GATC	8 cut(s)	165, 442, 591, 622, 646, 757, 835, 870
BspACI	CCGC	4 cut(s)	48, 270, 399, 452
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	4 cut(s)	60, 265, 656, 737
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	4 cut(s)	586, 617, 765, 830
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	3 cut(s)	339, 411, 489
BsrI	ACTGG	2 cut(s)	830, 847
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	8 cut(s)	165, 442, 591, 622, 646, 757, 835, 870
BssNAI	GTATAC	1 cut(s)	867
BssNI	GRCGYC	1 cut(s)	32
Bst1107I	GTATAC	1 cut(s)	867
Bst2UI	CCWGG	2 cut(s)	479, 596
Bst4CI	ACNGT	7 cut(s)	262, 391, 688, 705, 892, 924, 1000
BstACI	GRCGYC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	810, 1137
BstDEI	CTNAG	4 cut(s)	68, 273, 643, 724
BstF5I	GGATG	1 cut(s)	973
BstKTI	GATC	8 cut(s)	168, 445, 594, 625, 649, 760, 838, 873
BstMBI	GATC	8 cut(s)	165, 442, 591, 622, 646, 757, 835, 870
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 566, 809
BstNI	CCWGG	2 cut(s)	479, 596
BstNSI	RCATGY	1 cut(s)	1085
BstSCI	CCNGG	2 cut(s)	477, 594
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	6 cut(s)	57, 105, 403, 544, 544, 787
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BstZ17I	GTATAC	1 cut(s)	867
Bsu36I	CCTNAGG	1 cut(s)	724
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	973
BtsIMutI	CAGTG	3 cut(s)	258, 627, 701
Cac8I	GCNNGC	2 cut(s)	810, 1137
Cfr13I	GGNCC	2 cut(s)	402, 882
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	85, 1187
CviAII	CATG	7 cut(s)	323, 448, 565, 657, 673, 895, 1082
CviQI	GTAC	2 cut(s)	85, 1187
DdeI	CTNAG	4 cut(s)	68, 273, 643, 724
DpnI	GATC	8 cut(s)	167, 444, 593, 624, 648, 759, 837, 872
DpnII	GATC	8 cut(s)	165, 442, 591, 622, 646, 757, 835, 870
DrdI	GACNNNNNNGTC	1 cut(s)	263
DriI	GACNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1105I	GACNNNNNGTC	1 cut(s)	151
Eco47I	GGWCC	2 cut(s)	402, 882
Eco72I	CACGTG	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	724
Eco88I	CYCGRG	2 cut(s)	149, 184
EcoRI	GAATTC	1 cut(s)	938
EcoRII	CCWGG	2 cut(s)	477, 594
FaeI	CATG	7 cut(s)	326, 451, 568, 660, 676, 898, 1085
FaqI	GGGAC	2 cut(s)	933, 1081
FatI	CATG	7 cut(s)	322, 447, 564, 656, 672, 894, 1081
FauI	CCCGC	2 cut(s)	392, 445
FauNDI	CATATG	1 cut(s)	958
FblI	GTMKAC	1 cut(s)	866
Fnu4HI	GCNGC	7 cut(s)	46, 119, 270, 417, 533, 558, 801
FokI	GGATG	1 cut(s)	960
Fsp4HI	GCNGC	7 cut(s)	46, 119, 270, 417, 533, 558, 801
FspBI	CTAG	2 cut(s)	428, 440
GluI	GCNGC	7 cut(s)	46, 119, 270, 417, 533, 558, 801
GsuI	CTGGAG	1 cut(s)	1085
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	7 cut(s)	326, 451, 568, 660, 676, 898, 1085
HincII	GTYRAC	4 cut(s)	256, 954, 994, 1042
HindII	GTYRAC	4 cut(s)	256, 954, 994, 1042
HindIII	AAGCTT	1 cut(s)	1196
HinfI	GANTC	8 cut(s)	17, 70, 152, 275, 431, 669, 1094, 1120
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	8 cut(s)	53, 100, 256, 471, 867, 954, 994, 1042
Hpy188I	TCNGA	4 cut(s)	16, 134, 518, 646
Hpy188III	TCNNGA	8 cut(s)	143, 186, 726, 935, 1102, 1112, 1124, 1151
Hpy8I	GTNNAC	8 cut(s)	53, 100, 256, 471, 867, 954, 994, 1042
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	22, 191, 199
HpyCH4III	ACNGT	7 cut(s)	262, 391, 688, 705, 892, 924, 1000
HpyCH4IV	ACGT	3 cut(s)	55, 178, 492
HpyCH4V	TGCA	8 cut(s)	230, 308, 353, 532, 701, 717, 752, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 566, 809
HpyF3I	CTNAG	4 cut(s)	68, 273, 643, 724
HpySE526I	ACGT	3 cut(s)	55, 178, 492
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	7 cut(s)	326, 451, 568, 660, 676, 898, 1085
Kzo9I	GATC	8 cut(s)	165, 442, 591, 622, 646, 757, 835, 870
Lsp1109I	GCAGC	6 cut(s)	57, 105, 403, 544, 544, 787
LweI	GCATC	1 cut(s)	982
MaeI	CTAG	2 cut(s)	428, 440
MaeII	ACGT	3 cut(s)	55, 178, 492
MaeIII	GTNAC	1 cut(s)	775
MalI	GATC	8 cut(s)	167, 444, 593, 624, 648, 759, 837, 872
MboI	GATC	8 cut(s)	165, 442, 591, 622, 646, 757, 835, 870
MboII	GAAGA	4 cut(s)	349, 499, 1070, 1129
MfeI	CAATTG	1 cut(s)	650
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	1182
MlyI	GAGTC	4 cut(s)	79, 161, 284, 1103
MseI	TTAA	5 cut(s)	191, 237, 375, 495, 611
MspA1I	CMGCKG	3 cut(s)	48, 272, 620
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	479, 596
MunI	CAATTG	1 cut(s)	650
Mva1269I	GAATGC	1 cut(s)	1166
MvaI	CCWGG	2 cut(s)	479, 596
MwoI	GCNNNNNNNGC	3 cut(s)	416, 566, 809
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	8 cut(s)	165, 442, 591, 622, 646, 757, 835, 870
NlaIII	CATG	7 cut(s)	326, 451, 568, 660, 676, 898, 1085
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	775
NspI	RCATGY	1 cut(s)	1085
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	1166
PfeI	GAWTC	4 cut(s)	17, 431, 669, 1120
PflFI	GACNNNGTC	2 cut(s)	57, 69
PkrI	GCNGC	7 cut(s)	47, 120, 271, 418, 534, 559, 802
PleI	GAGTC	4 cut(s)	78, 160, 283, 1102
PmaCI	CACGTG	1 cut(s)	179
PmlI	CACGTG	1 cut(s)	179
PpsI	GAGTC	4 cut(s)	78, 160, 283, 1102
Ppu21I	YACGTR	1 cut(s)	179
PshBI	ATTAAT	1 cut(s)	611
Psp1406I	AACGTT	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	477, 594
PspCI	CACGTG	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	477, 594
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	2 cut(s)	402, 882
PsuI	RGATCY	1 cut(s)	442
PsyI	GACNNNGTC	2 cut(s)	57, 69
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	2 cut(s)	86, 1188
RsaNI	GTAC	2 cut(s)	85, 1187
SaqAI	TTAA	5 cut(s)	191, 237, 375, 495, 611
SatI	GCNGC	7 cut(s)	46, 119, 270, 417, 533, 558, 801
Sau3AI	GATC	8 cut(s)	165, 442, 591, 622, 646, 757, 835, 870
Sau96I	GGNCC	2 cut(s)	402, 882
SchI	GAGTC	4 cut(s)	79, 161, 284, 1103
ScrFI	CCNGG	2 cut(s)	479, 596
SduI	GDGCHC	1 cut(s)	1182
SfaNI	GCATC	1 cut(s)	982
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	2 cut(s)	402, 882
SmlI	CTYRAG	3 cut(s)	374, 978, 1112
SmoI	CTYRAG	3 cut(s)	374, 978, 1112
SsiI	CCGC	4 cut(s)	48, 270, 399, 452
SspMI	CTAG	2 cut(s)	428, 440
StyD4I	CCNGG	2 cut(s)	477, 594
TaaI	ACNGT	7 cut(s)	262, 391, 688, 705, 892, 924, 1000
TaiI	ACGT	3 cut(s)	58, 181, 495
TaqI	TCGA	2 cut(s)	113, 168
TatI	WGTACW	1 cut(s)	1186
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	4 cut(s)	17, 431, 669, 1120
Tru1I	TTAA	5 cut(s)	191, 237, 375, 495, 611
Tru9I	TTAA	5 cut(s)	191, 237, 375, 495, 611
TscAI	CASTG	3 cut(s)	265, 634, 708
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	6 cut(s)	45, 118, 416, 532, 557, 800
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	4 cut(s)	339, 350, 500, 1136
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	3 cut(s)	265, 634, 708
Tth111I	GACNNNGTC	2 cut(s)	57, 69
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	2 cut(s)	402, 882
VspI	ATTAAT	1 cut(s)	611
XapI	RAATTY	1 cut(s)	938
XceI	RCATGY	1 cut(s)	1085
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XmiI	GTMKAC	1 cut(s)	866
XspI	CTAG	2 cut(s)	428, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.