Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003838

Physical Location & Seq

Genomic Coordinates Reverse (-)

65250861 .. 65254237

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0475200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTGTCGGATATGCTTTTGTGGTGAAAATGAAGGAAGTCAGAGAGCAAGAAGGATGCTTCCATGTAAAACCTGCGGCAAAAAGTACCATAGGAACTGCTTGAAAACTTGGTCTCAACACAGAGATCTATTTCACTGGAGTTCATGGGCATGCCCCTCGTGCCGAATTTGTGAGCTTCCTATATCACCTCTTGCTGGAAGTGTGAGCCATACTGAAGAGATTTTCTCTGTCAGTGAGCCAAGCGTATTGAAGCACAAGTTTGTTGATGAAGTGATGTTGAATGGTGGAGATAGGACCTCCAAAGTTCGTATTAAGGGCAAGTCTCATGGTCTAGATAGAGTAGAGGACACTGGGAAGCATGCTGGCAAGTCTAAGCCTGTGAAAGAGAAGAAGCTAGTGATAAACTTTGGTGCAAAAAAGTTAAATATAACTAAATCTCCAAGTTCTGATGCTTCAACCTATCAAAGAGAACATGCTTCGGTGACCTCCAATGGTGGTGAAGATGCGAGCCAGAGGACAACAAGTACTATGGTGGGAAATAGACATGATCGTTCTGCTAATTTTGGCGATGCTAAAGGCTGCATTAGTGAAGATGAGAGCATGGACATGTCATTACCTTTTATATTTATTTTGAAGCAGGATGAAGTCCCAACCAAGCCAAGATTGCCATCAAGTCCATACCAAAAGCCTCTGAAATCAGTTGTGCCACCACTGATTCCAACTGAAGATGAGCAGGAGAAGCAAGAAGAAGGCTTCATGGGAACTCTTGTAAACCTTTTAGTCGACGCCTGTGCATCTGTTTTGAAATTCTTGGGGAAAAGCACTCAAACTATCAAGAACAAAGCCAGCAGAAATAGCAGCATAAGAATTCAATTGGGTTCATGTTTAAACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

298

Amino Acids

33.03

Weight (kDa)

9.16

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58060 AT3G58060
fragaria_vesca	FvH4_3g44550 FvH4_3g44550 FvH4_3g44550
malus_domestica	MD03G1011700.v1.1 MD11G1014600.v1.1
prunus_persica	Prupe.6G012100_v2.0.a1 Prupe.7G081200_v2.0.a1
pyrus_communis	pycom11g00990
rosa_chinensis	RchiOBHm_Chr3g0479221 RchiOBHm_Chr5g0081261
rosa_laevigata	RLG00000023593 RLG00000036922
rosa_multiflora	Rmu_sc0007768.1_g000006 Rmu_ssc0000432.1_g000058
rosa_roxburghii	Rroxscaffold_1G00002230 Rroxscaffold_6G00402530
rosa_rugosa	Rorug03G0172300 Rorug03G0172800 Rorug03G0172800 Rorug05G0475200 Rorug05G0475300
rosa_samantha	Rh3AG223900 Rh3BG256800 Rh3CG252500 Rh3DG248700 Rh5AG526900 Rh5BG551100 Rh5CG574000 Rh5DG561100
rosa_wichuraiana	Rw3G020070 Rw3G020530 Rw5G048980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	783
AciI	CCGC	1 cut(s)	75
AcsI	RAATTY	3 cut(s)	165, 806, 867
AcuI	CTGAAG	2 cut(s)	234, 744
AcyI	GRCGYC	1 cut(s)	786
AfaI	GTAC	2 cut(s)	86, 526
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	7 cut(s)	103, 250, 280, 456, 634, 805, 872
AluBI	AGCT	2 cut(s)	175, 394
AluI	AGCT	2 cut(s)	175, 394
Alw26I	GTCTC	2 cut(s)	117, 327
ApeKI	GCWGC	2 cut(s)	579, 858
ApoI	RAATTY	3 cut(s)	165, 806, 867
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	4 cut(s)	35, 177, 493, 509
AvaII	GGWCC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	566, 870
BccI	CCATC	1 cut(s)	676
BcgI	CGANNNNNNTGC	4 cut(s)	138, 172, 773, 807
BcoDI	GTCTC	2 cut(s)	117, 327
BfaI	CTAG	2 cut(s)	332, 395
BfuAI	ACCTGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	3 cut(s)	76, 580, 859
BlsI	GCNGC	3 cut(s)	77, 581, 860
BmcAI	AGTACT	1 cut(s)	526
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	5 cut(s)	45, 439, 493, 559, 803
BmuI	ACTGGG	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	667
BsaHI	GRCGYC	1 cut(s)	786
BsaI	GGTCTC	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	140, 355
Bse8I	GATNNNNATC	1 cut(s)	667
BseGI	GGATG	2 cut(s)	60, 646
BseJI	GATNNNNATC	1 cut(s)	667
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseNI	ACTGG	2 cut(s)	140, 355
BseXI	GCAGC	2 cut(s)	566, 870
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	117, 327
BsmFI	GGGAC	1 cut(s)	632
Bso31I	GGTCTC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	124, 547
BspACI	CCGC	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	140, 355
BssMI	GATC	2 cut(s)	124, 547
BssNI	GRCGYC	1 cut(s)	786
BssSI	CACGAG	1 cut(s)	157
Bst2BI	CACGAG	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	786
BstC8I	GCNNGC	5 cut(s)	151, 360, 364, 508, 847
BstDEI	CTNAG	2 cut(s)	372, 894
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	60, 646
BstKTI	GATC	2 cut(s)	127, 550
BstMAI	GTCTC	2 cut(s)	117, 327
BstMBI	GATC	2 cut(s)	124, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 664, 739, 855
BstNSI	RCATGY	4 cut(s)	153, 362, 476, 610
BstPI	GGTNACC	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	566, 870
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	60, 646
BtsIMutI	CAGTG	4 cut(s)	133, 238, 348, 710
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	5 cut(s)	151, 360, 364, 508, 847
Cfr13I	GGNCC	1 cut(s)	294
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	2 cut(s)	85, 525
CviQI	GTAC	2 cut(s)	85, 525
DdeI	CTNAG	2 cut(s)	372, 894
DpnI	GATC	2 cut(s)	126, 549
DpnII	GATC	2 cut(s)	124, 547
DraI	TTTAAA	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	234, 744
Eco91I	GGTNACC	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	294
EcoO65I	GGTNACC	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	867
FaqI	GGGAC	1 cut(s)	632
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	3 cut(s)	76, 580, 859
FokI	GGATG	2 cut(s)	67, 653
Fsp4HI	GCNGC	3 cut(s)	76, 580, 859
FspBI	CTAG	2 cut(s)	332, 395
GluI	GCNGC	3 cut(s)	76, 580, 859
GsuI	CTGGAG	1 cut(s)	157
HgaI	GACGC	1 cut(s)	794
Hin1I	GRCGYC	1 cut(s)	786
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HinfI	GANTC	1 cut(s)	715
HphI	GGTGA	4 cut(s)	35, 177, 493, 509
Hpy166II	GTNNAC	2 cut(s)	772, 784
Hpy188I	TCNGA	4 cut(s)	9, 42, 448, 693
Hpy188III	TCNNGA	2 cut(s)	332, 835
Hpy8I	GTNNAC	2 cut(s)	772, 784
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	3 cut(s)	26, 45, 743
HpyCH4V	TGCA	3 cut(s)	413, 582, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 664, 739, 855
HpyF3I	CTNAG	2 cut(s)	372, 894
Hsp92I	GRCGYC	1 cut(s)	786
Kzo9I	GATC	2 cut(s)	124, 547
Lsp1109I	GCAGC	2 cut(s)	566, 870
LweI	GCATC	5 cut(s)	45, 439, 493, 559, 803
MaeI	CTAG	2 cut(s)	332, 395
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	126, 549
MboI	GATC	2 cut(s)	124, 547
MboII	GAAGA	6 cut(s)	227, 400, 512, 602, 737, 758
MfeI	CAATTG	1 cut(s)	872
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	5 cut(s)	165, 559, 806, 867, 872
MmeI	TCCRAC	1 cut(s)	743
MnlI	CCTC	7 cut(s)	166, 198, 307, 337, 496, 507, 699
MseI	TTAA	3 cut(s)	312, 422, 887
MslI	CAYNNNNRTG	2 cut(s)	148, 605
MssI	GTTTAAAC	1 cut(s)	888
MunI	CAATTG	1 cut(s)	872
MwoI	GCNNNNNNNGC	4 cut(s)	159, 664, 739, 855
NdeII	GATC	2 cut(s)	124, 547
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	4 cut(s)	153, 362, 476, 610
PaeI	GCATGC	2 cut(s)	153, 362
PciI	ACATGT	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	715
PkrI	GCNGC	3 cut(s)	77, 581, 860
PmeI	GTTTAAAC	1 cut(s)	888
PpuMI	RGGWCCY	1 cut(s)	294
PscI	ACATGT	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	481
PspPI	GGNCC	1 cut(s)	294
PspPPI	RGGWCCY	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	2 cut(s)	86, 526
RsaNI	GTAC	2 cut(s)	85, 525
RseI	CAYNNNNRTG	2 cut(s)	148, 605
SalI	GTCGAC	1 cut(s)	782
SaqAI	TTAA	3 cut(s)	312, 422, 887
SatI	GCNGC	3 cut(s)	76, 580, 859
Sau3AI	GATC	2 cut(s)	124, 547
Sau96I	GGNCC	1 cut(s)	294
ScaI	AGTACT	1 cut(s)	526
SetI	ASST	9 cut(s)	74, 177, 190, 299, 396, 461, 488, 619, 777
SfaNI	GCATC	5 cut(s)	45, 439, 493, 559, 803
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	2 cut(s)	148, 605
SphI	GCATGC	2 cut(s)	153, 362
Sse9I	AATT	5 cut(s)	165, 559, 806, 867, 872
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	2 cut(s)	332, 395
TaqI	TCGA	1 cut(s)	783
TasI	AATT	5 cut(s)	165, 559, 806, 867, 872
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	715
Tru1I	TTAA	3 cut(s)	312, 422, 887
Tru9I	TTAA	3 cut(s)	312, 422, 887
TscAI	CASTG	4 cut(s)	140, 238, 355, 717
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	2 cut(s)	579, 858
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	6 cut(s)	45, 132, 282, 657, 745, 870
TspRI	CASTG	4 cut(s)	140, 238, 355, 717
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	3 cut(s)	165, 806, 867
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	4 cut(s)	153, 362, 476, 610
XmiI	GTMKAC	1 cut(s)	783
XspI	CTAG	2 cut(s)	332, 395
ZrmI	AGTACT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.