Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003838

Physical Location & Seq

Genomic Coordinates Reverse (-)

14604398 .. 14607015

Gene Structure 2618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0172800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCTGCTAGACACACACATGTGTGCCCTTTAAGGTCTTTTTGTCACGCAAGCTGTGTGTGGCCTTTCCCCATAATTATAGTAGTGATATTCCAGGTGGTTGACGTGGCAGCCTCCCCCGACCACCCTATTGTTGTTGGCGTATGGGACACCACTATCTGGAGGAATAGCCATGAAGATGAAGAATGTAGACCTAATTTCGTTCCGGCAGCGGAATTGTCCATCCAGGGTTTGCAGCAAGTGAGACTTGATAGCTTGGAATCTGAAGCAACAAAATCATCATGTGCAATTTGTTTGGAGGATTTTGCAGGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0009705 GO:0009791 GO:0009845 GO:0010154 GO:0015075 GO:0015318 GO:0016020 GO:0022414 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0035618 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071421 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

105

Amino Acids

11.68

Weight (kDa)

4.94

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58060 AT3G58060
fragaria_vesca	FvH4_3g44550 FvH4_3g44550 FvH4_3g44550
malus_domestica	MD03G1011700.v1.1 MD11G1014600.v1.1
prunus_persica	Prupe.6G012100_v2.0.a1 Prupe.7G081200_v2.0.a1
pyrus_communis	pycom11g00990
rosa_chinensis	RchiOBHm_Chr3g0479221 RchiOBHm_Chr5g0081261
rosa_laevigata	RLG00000023593 RLG00000036922
rosa_multiflora	Rmu_sc0007768.1_g000006 Rmu_ssc0000432.1_g000058
rosa_roxburghii	Rroxscaffold_1G00002230 Rroxscaffold_6G00402530
rosa_rugosa	Rorug03G0172300 Rorug03G0172800 Rorug03G0172800 Rorug05G0475200 Rorug05G0475300
rosa_samantha	Rh3AG223900 Rh3BG256800 Rh3CG252500 Rh3DG248700 Rh5AG526900 Rh5BG551100 Rh5CG574000 Rh5DG561100
rosa_wichuraiana	Rw3G020070 Rw3G020530 Rw5G048980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	190
AciI	CCGC	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	2 cut(s)	93, 225
AleI	CACNNNNGTG	2 cut(s)	20, 22
AluBI	AGCT	2 cut(s)	54, 255
AluI	AGCT	2 cut(s)	54, 255
Alw26I	GTCTC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	5, 110, 209, 235
BaeGI	GKGCMC	1 cut(s)	29
BbvI	GCAGC	3 cut(s)	122, 221, 247
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	95, 227
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	4 cut(s)	6, 111, 210, 236
BlsI	GCNGC	4 cut(s)	7, 112, 211, 237
Bme1390I	CCNGG	2 cut(s)	95, 227
BmgBI	CACGTC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	95, 227
BpmI	CTGGAG	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	95, 227
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	122, 221, 247
BshFI	GGCC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	29
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	226
Bst2UI	CCWGG	2 cut(s)	95, 227
BstC8I	GCNNGC	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	238
BstNI	CCWGG	2 cut(s)	95, 227
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	93, 225
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	122, 221, 247
BsuRI	GGCC	1 cut(s)	64
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	52
CviAII	CATG	3 cut(s)	20, 173, 282
CviJI	RGCY	6 cut(s)	5, 54, 64, 113, 171, 255
CviKI_1	RGCY	6 cut(s)	5, 54, 64, 113, 171, 255
Eco57I	CTGAAG	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	93, 225
FaeI	CATG	3 cut(s)	23, 176, 285
FaiI	YATR	6 cut(s)	21, 74, 80, 145, 174, 283
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	3 cut(s)	19, 172, 281
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	6, 111, 210, 236
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	4 cut(s)	6, 111, 210, 236
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	4 cut(s)	6, 111, 210, 236
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	3 cut(s)	23, 176, 285
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	103, 191
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	2 cut(s)	103, 191
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	235, 287, 308
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	23, 176, 285
LpnPI	CCDG	7 cut(s)	80, 107, 145, 212, 219, 239, 294
Lsp1109I	GCAGC	3 cut(s)	122, 221, 247
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	44
MboII	GAAGA	2 cut(s)	188, 194
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	4 cut(s)	75, 196, 215, 288
MnlI	CCTC	3 cut(s)	124, 156, 292
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	4 cut(s)	18, 20, 22, 177
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	95, 227
MvaI	CCWGG	2 cut(s)	95, 227
NlaIII	CATG	3 cut(s)	23, 176, 285
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	1 cut(s)	23
OliI	CACNNNNGTG	2 cut(s)	20, 22
PciI	ACATGT	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	7, 112, 211, 237
PscI	ACATGT	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	93, 225
PspGI	CCWGG	2 cut(s)	93, 225
RseI	CAYNNNNRTG	4 cut(s)	18, 20, 22, 177
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	4 cut(s)	6, 111, 210, 236
ScrFI	CCNGG	2 cut(s)	95, 227
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	6 cut(s)	38, 56, 99, 108, 196, 257
SmiMI	CAYNNNNRTG	4 cut(s)	18, 20, 22, 177
Sse9I	AATT	4 cut(s)	75, 196, 215, 288
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	93, 225
TaiI	ACGT	1 cut(s)	108
TasI	AATT	4 cut(s)	75, 196, 215, 288
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	4 cut(s)	5, 110, 209, 235
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	189, 195
Van91I	CCANNNNNTGG	1 cut(s)	159
XceI	RCATGY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	190
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.