Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003838

Physical Location & Seq

Genomic Coordinates Reverse (-)

871166 .. 874757

Gene Structure 3592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G012100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAGGGAAAATTGGATACGGGTGGTGGTGTGAAATCGCCGCTGTTGGCGAGCGGTGGACGCAGTCGGCGACTGAGTCGAAGGAACTCATATAACTCACTCAGAAACGACTTCGTTTCCAGGCTCCCTGACAATGTTCGAGCTGGCATCGATCCCGAGTCGCCTGAAGGCATCGACTACTCTCGAACCACAGGCTTAAACCGAGGGGAGAAGGAATATTATGAAACCCAATTTGCAACACTTCAATCCTTTGAGGAGGTTGACTCTATAGTGCAAGCAGACTGTATCGACGAGGACGATCTCGAGGAACGAGCACAACATGAAAGAGCAATGAAGATTTCCAACTATGCTAATATACTTCTCTTGGGACTTAAGATCTATGCTACTATAAAGAGTGGGTCCATAGCCATTGCTGCATCAACACTAGATTCTTTACTAGATCTCTTGGCTGGTGGCATACTTTGGTTTACTCACCTGGCCATGAAAAACATCAATATCTATAAATATCCTATTGGAAAATTGAGGGTTCAGCCTGTTGGCATAATCATCTTTGCTGCTATCATGGCTACACTTGGGTTTCAAGTGTTGATCCAGGCTGTCGAACAACTAGTTACAGATGATCCCACTGAAAAGATGTCCTCAAGTCAATTGGTGTGGCTGTATGTAATTATGATATTTGCTACTGTGGTAAAACTTGCACTCTGGTTTTATTGCAGGAGCTCAGGAAACAAGATCGTTCGTGCCTATGCGAAGGATCACTATTTTGATGTGGTGACGAATGTAGTAGGATTAGTTGCTGCTGTTCTTGCTAATAGGTTCTACTGGTGGCTTGATCCTGCTGGTGCTATTCTCCTTGCTGTATACACGATTGTAAATTGGTCCGGAACTGTTATGGAAAATGCAGTTTCCCTTGTGGGACAATCGGCCCCTCCTGAATTCCTACAAAAACTGACATATCTTGTCATAATGCACCCTGAAGTGAAGCGTATTGACACAGTTCGTGCTTACACATTTGGTGTTCTTTATTTTGTGGAGGTTGACATTGAACTCCCAGAGGAGATGCCCTTAAAAGAAGCACATGCAATTGGAGAAACCCTCCAGATAAAGATTGAAAAACTTCCCGAAATTGAGCGAGCATTTGTTCATCTTGACTTTGAATGCGAGCACAAACCAGAACATTCTGTACTCGTCAAGCTTCCAAACACACAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

405

Amino Acids

45.29

Weight (kDa)

5.41

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58060 AT3G58060
fragaria_vesca	FvH4_3g44550 FvH4_3g44550 FvH4_3g44550
malus_domestica	MD03G1011700.v1.1 MD11G1014600.v1.1
prunus_persica	Prupe.6G012100_v2.0.a1 Prupe.7G081200_v2.0.a1
pyrus_communis	pycom11g00990
rosa_chinensis	RchiOBHm_Chr3g0479221 RchiOBHm_Chr5g0081261
rosa_laevigata	RLG00000023593 RLG00000036922
rosa_multiflora	Rmu_sc0007768.1_g000006 Rmu_ssc0000432.1_g000058
rosa_roxburghii	Rroxscaffold_1G00002230 Rroxscaffold_6G00402530
rosa_rugosa	Rorug03G0172300 Rorug03G0172800 Rorug03G0172800 Rorug05G0475200 Rorug05G0475300
rosa_samantha	Rh3AG223900 Rh3BG256800 Rh3CG252500 Rh3DG248700 Rh5AG526900 Rh5BG551100 Rh5CG574000 Rh5DG561100
rosa_wichuraiana	Rw3G020070 Rw3G020530 Rw5G048980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	861
AccIII	TCCGGA	1 cut(s)	881
AciI	CCGC	2 cut(s)	41, 54
AclWI	GGATC	5 cut(s)	146, 583, 614, 762, 827
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	935
AcuI	CTGAAG	2 cut(s)	186, 996
AfaI	GTAC	1 cut(s)	1185
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	245, 581, 1046, 1112, 1157
AhlI	ACTAGT	1 cut(s)	607
AjnI	CCWGG	3 cut(s)	119, 474, 591
AluBI	AGCT	3 cut(s)	143, 720, 1195
AluI	AGCT	3 cut(s)	143, 720, 1195
Alw21I	GWGCWC	3 cut(s)	316, 722, 1167
AlwI	GGATC	5 cut(s)	146, 583, 614, 762, 827
Ama87I	CYCGRG	2 cut(s)	155, 302
Aor13HI	TCCGGA	1 cut(s)	881
AoxI	GGCC	2 cut(s)	477, 924
ApeKI	GCWGC	3 cut(s)	413, 554, 797
ApoI	RAATTY	1 cut(s)	935
Asp700I	GAANNNNTTC	1 cut(s)	1116
AspS9I	GGNCC	3 cut(s)	399, 879, 925
AsuHPI	GGTGA	2 cut(s)	464, 784
AvaI	CYCGRG	2 cut(s)	155, 302
AvaII	GGWCC	2 cut(s)	399, 879
BalI	TGGCCA	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	722
Bbv12I	GWGCWC	3 cut(s)	316, 722, 1167
BbvI	GCAGC	3 cut(s)	400, 541, 784
BciT130I	CCWGG	3 cut(s)	121, 476, 593
BciVI	GTATCC	1 cut(s)	10
BcuI	ACTAGT	1 cut(s)	607
BfaI	CTAG	3 cut(s)	425, 437, 608
BfmI	CTRYAG	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	10
BglII	AGATCT	2 cut(s)	375, 439
BisI	GCNGC	4 cut(s)	41, 414, 555, 798
BlsI	GCNGC	4 cut(s)	42, 415, 556, 799
Bme1390I	CCNGG	3 cut(s)	121, 476, 593
Bme18I	GGWCC	2 cut(s)	399, 879
BmeT110I	CYCGRG	2 cut(s)	155, 302
BmgT120I	GGNCC	3 cut(s)	399, 879, 925
BmiI	GGNNCC	3 cut(s)	125, 400, 927
BmrFI	CCNGG	3 cut(s)	121, 476, 593
BmsI	GCATC	4 cut(s)	156, 180, 425, 1050
BplI	GAGNNNNNCTC	4 cut(s)	248, 280, 1080, 1112
BpmI	CTGGAG	1 cut(s)	1082
Bpu10I	CCTNAGC	1 cut(s)	721
BpuEI	CTTGAG	1 cut(s)	625
Bsa29I	ATCGAT	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	881
Bse1I	ACTGG	1 cut(s)	827
Bse3DI	GCAATG	2 cut(s)	336, 408
BseAI	TCCGGA	1 cut(s)	881
BseBI	CCWGG	3 cut(s)	121, 476, 593
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	202
BseMI	GCAATG	2 cut(s)	336, 408
BseMII	CTCAG	3 cut(s)	65, 115, 735
BseNI	ACTGG	1 cut(s)	827
BseRI	GAGGAG	2 cut(s)	269, 1070
BseXI	GCAGC	3 cut(s)	400, 541, 784
BshFI	GGCC	2 cut(s)	479, 926
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	3 cut(s)	316, 722, 1167
BsiHKCI	CYCGRG	2 cut(s)	155, 302
BsiSI	CCGG	1 cut(s)	882
BslFI	GGGAC	2 cut(s)	381, 930
BsmFI	GGGAC	2 cut(s)	381, 930
BsmI	GAATGC	1 cut(s)	1163
BsnI	GGCC	2 cut(s)	479, 926
BsoBI	CYCGRG	2 cut(s)	155, 302
Bsp1286I	GDGCHC	3 cut(s)	316, 722, 1167
Bsp13I	TCCGGA	1 cut(s)	881
Bsp143I	GATC	9 cut(s)	151, 298, 375, 439, 588, 619, 732, 754, 832
BspACI	CCGC	2 cut(s)	41, 54
BspANI	GGCC	2 cut(s)	479, 926
BspCNI	CTCAG	3 cut(s)	66, 114, 734
BspDI	ATCGAT	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	881
BspLI	GGNNCC	3 cut(s)	125, 400, 927
BspPI	GGATC	5 cut(s)	146, 583, 614, 762, 827
BspTI	CTTAAG	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	336, 408
BsrI	ACTGG	1 cut(s)	827
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	9 cut(s)	151, 298, 375, 439, 588, 619, 732, 754, 832
BssNAI	GTATAC	1 cut(s)	862
Bst1107I	GTATAC	1 cut(s)	862
Bst2UI	CCWGG	3 cut(s)	121, 476, 593
Bst4CI	ACNGT	4 cut(s)	284, 685, 889, 997
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	5 cut(s)	52, 145, 276, 1134, 1163
BstDEI	CTNAG	3 cut(s)	74, 101, 721
BstKTI	GATC	9 cut(s)	154, 301, 378, 442, 591, 622, 735, 757, 835
BstMBI	GATC	9 cut(s)	151, 298, 375, 439, 588, 619, 732, 754, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 413, 563, 806
BstNI	CCWGG	3 cut(s)	121, 476, 593
BstNSI	RCATGY	1 cut(s)	1082
BstSCI	CCNGG	3 cut(s)	119, 474, 591
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	400, 541, 784
BstX2I	RGATCY	2 cut(s)	375, 439
BstYI	RGATCY	2 cut(s)	375, 439
BstZ17I	GTATAC	1 cut(s)	862
Bsu15I	ATCGAT	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	479, 926
BsuTUI	ATCGAT	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	624
Cac8I	GCNNGC	5 cut(s)	52, 145, 276, 1134, 1163
Cfr13I	GGNCC	3 cut(s)	399, 879, 925
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	1184
CspCI	CAANNNNNGTGG	2 cut(s)	635, 670
CviAII	CATG	4 cut(s)	320, 481, 562, 1079
CviQI	GTAC	1 cut(s)	1184
DdeI	CTNAG	3 cut(s)	74, 101, 721
DpnI	GATC	9 cut(s)	153, 300, 377, 441, 590, 621, 734, 756, 834
DpnII	GATC	9 cut(s)	151, 298, 375, 439, 588, 619, 732, 754, 832
EaeI	YGGCCR	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	722
Eco47I	GGWCC	2 cut(s)	399, 879
Eco53kI	GAGCTC	1 cut(s)	720
Eco57I	CTGAAG	2 cut(s)	186, 996
Eco88I	CYCGRG	2 cut(s)	155, 302
EcoICRI	GAGCTC	1 cut(s)	720
EcoRI	GAATTC	1 cut(s)	935
EcoRII	CCWGG	3 cut(s)	119, 474, 591
EcoT38I	GRGCYC	1 cut(s)	722
FaeI	CATG	4 cut(s)	323, 484, 565, 1082
FaqI	GGGAC	2 cut(s)	381, 930
FatI	CATG	4 cut(s)	319, 480, 561, 1078
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	4 cut(s)	41, 414, 555, 798
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	4 cut(s)	41, 414, 555, 798
FspBI	CTAG	3 cut(s)	425, 437, 608
GluI	GCNGC	4 cut(s)	41, 414, 555, 798
GsuI	CTGGAG	1 cut(s)	1082
HaeIII	GGCC	2 cut(s)	479, 926
HapII	CCGG	1 cut(s)	882
HgaI	GACGC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	323, 484, 565, 1082
HincII	GTYRAC	2 cut(s)	262, 1039
HindII	GTYRAC	2 cut(s)	262, 1039
HindIII	AAGCTT	1 cut(s)	1193
HinfI	GANTC	4 cut(s)	76, 158, 263, 428
HpaII	CCGG	1 cut(s)	882
HphI	GGTGA	2 cut(s)	464, 784
Hpy166II	GTNNAC	5 cut(s)	59, 262, 468, 862, 1039
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	9 cut(s)	155, 183, 302, 723, 882, 932, 1099, 1121, 1148
Hpy8I	GTNNAC	5 cut(s)	59, 262, 468, 862, 1039
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	4 cut(s)	75, 161, 205, 745
HpyCH4III	ACNGT	4 cut(s)	284, 685, 889, 997
HpyCH4V	TGCA	8 cut(s)	236, 274, 416, 698, 714, 902, 970, 1082
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 413, 563, 806
HpyF3I	CTNAG	3 cut(s)	74, 101, 721
Hsp92II	CATG	4 cut(s)	323, 484, 565, 1082
Kpn2I	TCCGGA	1 cut(s)	881
Kzo9I	GATC	9 cut(s)	151, 298, 375, 439, 588, 619, 732, 754, 832
LmnI	GCTCC	2 cut(s)	129, 717
Lsp1109I	GCAGC	3 cut(s)	400, 541, 784
LweI	GCATC	4 cut(s)	156, 180, 425, 1050
MaeI	CTAG	3 cut(s)	425, 437, 608
MaeIII	GTNAC	2 cut(s)	610, 772
MalI	GATC	9 cut(s)	153, 300, 377, 441, 590, 621, 734, 756, 834
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	9 cut(s)	151, 298, 375, 439, 588, 619, 732, 754, 832
MboII	GAAGA	1 cut(s)	346
MfeI	CAATTG	2 cut(s)	647, 1083
MflI	RGATCY	2 cut(s)	375, 439
MhlI	GDGCHC	3 cut(s)	316, 722, 1167
MlsI	TGGCCA	1 cut(s)	479
MluCI	AATT	9 cut(s)	11, 230, 518, 647, 666, 874, 935, 1083, 1125
MluNI	TGGCCA	1 cut(s)	479
MlyI	GAGTC	3 cut(s)	85, 167, 257
MmeI	TCCRAC	1 cut(s)	366
Mox20I	TGGCCA	1 cut(s)	479
MroI	TCCGGA	1 cut(s)	881
MroXI	GAANNNNTTC	1 cut(s)	1116
MscI	TGGCCA	1 cut(s)	479
MseI	TTAA	3 cut(s)	197, 372, 1067
Msp20I	TGGCCA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	43
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	882
MspR9I	CCNGG	3 cut(s)	121, 476, 593
MunI	CAATTG	2 cut(s)	647, 1083
Mva1269I	GAATGC	1 cut(s)	1163
MvaI	CCWGG	3 cut(s)	121, 476, 593
MwoI	GCNNNNNNNGC	4 cut(s)	60, 413, 563, 806
NdeII	GATC	9 cut(s)	151, 298, 375, 439, 588, 619, 732, 754, 832
NlaIII	CATG	4 cut(s)	323, 484, 565, 1082
NlaIV	GGNNCC	3 cut(s)	125, 400, 927
NmuCI	GTSAC	1 cut(s)	772
NspI	RCATGY	1 cut(s)	1082
PaeR7I	CTCGAG	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	2 cut(s)	67, 294
PctI	GAATGC	1 cut(s)	1163
PdmI	GAANNNNTTC	1 cut(s)	1116
PfeI	GAWTC	1 cut(s)	428
PflFI	GACNNNGTC	2 cut(s)	63, 75
PkrI	GCNGC	4 cut(s)	42, 415, 556, 799
PleI	GAGTC	3 cut(s)	84, 166, 257
PpsI	GAGTC	3 cut(s)	84, 166, 257
Psp124BI	GAGCTC	1 cut(s)	722
Psp6I	CCWGG	3 cut(s)	119, 474, 591
PspGI	CCWGG	3 cut(s)	119, 474, 591
PspN4I	GGNNCC	3 cut(s)	125, 400, 927
PspPI	GGNCC	3 cut(s)	399, 879, 925
PsrI	GAACNNNNNNTAC	2 cut(s)	1167, 1199
PsuI	RGATCY	2 cut(s)	375, 439
PsyI	GACNNNGTC	2 cut(s)	63, 75
RsaI	GTAC	1 cut(s)	1185
RsaNI	GTAC	1 cut(s)	1184
SacI	GAGCTC	1 cut(s)	722
SaqAI	TTAA	3 cut(s)	197, 372, 1067
SatI	GCNGC	4 cut(s)	41, 414, 555, 798
Sau3AI	GATC	9 cut(s)	151, 298, 375, 439, 588, 619, 732, 754, 832
Sau96I	GGNCC	3 cut(s)	399, 879, 925
SchI	GAGTC	3 cut(s)	85, 167, 257
ScrFI	CCNGG	3 cut(s)	121, 476, 593
SduI	GDGCHC	3 cut(s)	316, 722, 1167
SetI	ASST	7 cut(s)	145, 261, 477, 722, 818, 1038, 1197
SfaNI	GCATC	4 cut(s)	156, 180, 425, 1050
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	302
SinI	GGWCC	2 cut(s)	399, 879
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	3 cut(s)	302, 371, 640
SmoI	CTYRAG	3 cut(s)	302, 371, 640
SpeI	ACTAGT	1 cut(s)	607
Sse9I	AATT	9 cut(s)	11, 230, 518, 647, 666, 874, 935, 1083, 1125
SsiI	CCGC	2 cut(s)	41, 54
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	3 cut(s)	425, 437, 608
SstI	GAGCTC	1 cut(s)	722
StyD4I	CCNGG	3 cut(s)	119, 474, 591
TaaI	ACNGT	4 cut(s)	284, 685, 889, 997
TaqI	TCGA	8 cut(s)	79, 139, 150, 174, 184, 288, 303, 600
TasI	AATT	9 cut(s)	11, 230, 518, 647, 666, 874, 935, 1083, 1125
TatI	WGTACW	1 cut(s)	1183
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	3 cut(s)	197, 372, 1067
Tru9I	TTAA	3 cut(s)	197, 372, 1067
TscAI	CASTG	1 cut(s)	631
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	3 cut(s)	413, 554, 797
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	5 cut(s)	237, 336, 347, 497, 1133
TspRI	CASTG	1 cut(s)	631
Tth111I	GACNNNGTC	2 cut(s)	63, 75
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	399, 879
XapI	RAATTY	1 cut(s)	935
XceI	RCATGY	1 cut(s)	1082
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	861
XmnI	GAANNNNTTC	1 cut(s)	1116
XspI	CTAG	3 cut(s)	425, 437, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.