Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Reverse (-)

21718188 .. 21720053

Gene Structure 1866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTGGCCAAAACGCGCGTTTGAATGTGGTTCCCACTGTTACTATGCTCGGGGTTATGAAAGCTCGTCTTGTTGGCGCTACAAGAGGTCATGCTCTCCTCAAGAAAAAGAGTGATGCTTTAACTGTTCAGTTTAGGGCACTTCTCAAGAAAATCGTTACAGCTAAGGAGTCTATGGGAGATATGATGAAGACATCGTCTTTTGCTCTTACCGAAGTAAAGTATGTTGCTGGTGACAATGTCAAACATGTTGTCCTCGAGAACGTTAAAGAAGCTACTTTGAAGGTTCGTTCTCGGACAGAGAATATCGCTGGAGTGAAGCTGCCTAAGTTTGATCACTTCTCTGAAGGTGAGACCAAGAATGACTTGACCGGTTTAGCTAGAGGTGGTCAACAGGTCCGAGCTTGCCGTGTTGCTTATGTGAAAGCCATTGAAGTTCTAGTTGAGCTTGCTTCTCTCCAGACTTCTTTCTTGACCCTTGATGAAGCAATCAAGACGACTAACCGTAGGGTCAACGCTCTGGAGAATGTGGTGAAACCAAAGCTGGAGAATACAATCAGTTACATCAAGGGAGAGCTTGATGAGCTTGAGAGAGAGGATTTCTTCAGGTTGAAGAAGATTCAGGGATACAAGAGGAGGGAAGTCGAACGACAGGCAGCTAATGCTAAGGAGTTTGCTGAGGAAATGGTTCTTGAAGACATCTCTATGCAGAGAGGGATTTCGATAAACGCTGCTCGTAACTTCCTTGTTGGTGGTGCTGAGAAGGATTCAGACATTATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

261

Amino Acids

29.06

Weight (kDa)

9.52

Isoelectric Point (pI)

23.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_D	PF01813	17 - 208	3.7e-67	ATP synthase subunit D

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	17, 19
AclI	AACGTT	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	366, 589
AflIII	ACRYGT	1 cut(s)	247
AgeI	ACCGGT	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	25, 283, 434, 613, 695
Alw26I	GTCTC	1 cut(s)	347
Ama87I	CYCGRG	2 cut(s)	50, 257
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	3 cut(s)	322, 656, 731
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AsiGI	ACCGGT	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	687
AspLEI	GCGC	2 cut(s)	19, 80
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	245, 362, 544
AvaI	CYCGRG	2 cut(s)	50, 257
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	197, 702
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	3 cut(s)	309, 668, 718
BceAI	ACGGC	1 cut(s)	393
BciVI	GTATCC	1 cut(s)	620
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	381, 440
BfoI	RGCGCY	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	620
BisI	GCNGC	3 cut(s)	323, 657, 732
BlsI	GCNGC	3 cut(s)	324, 658, 733
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	2 cut(s)	50, 257
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	2 cut(s)	197, 702
BpmI	CTGGAG	4 cut(s)	333, 443, 542, 566
Bpu10I	CCTNAGC	3 cut(s)	165, 666, 678
BpuEI	CTTGAG	3 cut(s)	86, 131, 608
BsaI	GGTCTC	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	371
Bse118I	RCCGGY	1 cut(s)	371
BseMII	CTCAG	2 cut(s)	669, 750
BseRI	GAGGAG	2 cut(s)	89, 649
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	3 cut(s)	309, 668, 718
Bsh1236I	CGCG	2 cut(s)	17, 19
BshFI	GGCC	1 cut(s)	9
BshTI	ACCGGT	1 cut(s)	371
BsiHKCI	CYCGRG	2 cut(s)	50, 257
BsiSI	CCGG	1 cut(s)	372
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	2 cut(s)	50, 257
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	670, 751
BspFNI	CGCG	2 cut(s)	17, 19
BspLI	GGNNCC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	371
BssMI	GATC	1 cut(s)	334
Bst4CI	ACNGT	3 cut(s)	40, 127, 506
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	3 cut(s)	7, 406, 450
BstDEI	CTNAG	5 cut(s)	165, 327, 666, 678, 759
BstFNI	CGCG	2 cut(s)	17, 19
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	19, 80
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	583, 662
BstNSI	RCATGY	1 cut(s)	251
BstSLI	GKGCMC	1 cut(s)	142
BstUI	CGCG	2 cut(s)	17, 19
BstV1I	GCAGC	3 cut(s)	309, 668, 718
BstV2I	GAAGAC	2 cut(s)	197, 702
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	7, 406, 450
CfoI	GCGC	2 cut(s)	19, 80
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	397
CspAI	ACCGGT	1 cut(s)	371
CviAII	CATG	2 cut(s)	92, 248
DdeI	CTNAG	5 cut(s)	165, 327, 666, 678, 759
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	366, 589
Eco88I	CYCGRG	2 cut(s)	50, 257
FaeI	CATG	2 cut(s)	95, 251
FaiI	YATR	9 cut(s)	47, 59, 93, 176, 185, 225, 249, 420, 707
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 350, 382
FatI	CATG	2 cut(s)	91, 247
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	323, 657, 732
Fsp4HI	GCNGC	3 cut(s)	323, 657, 732
FspBI	CTAG	2 cut(s)	381, 440
GlaI	GCGC	2 cut(s)	18, 79
GluI	GCNGC	3 cut(s)	323, 657, 732
GsuI	CTGGAG	4 cut(s)	333, 443, 542, 566
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	372
HhaI	GCGC	2 cut(s)	19, 80
Hin1II	CATG	2 cut(s)	95, 251
Hin6I	GCGC	2 cut(s)	17, 78
HinP1I	GCGC	2 cut(s)	17, 78
HincII	GTYRAC	2 cut(s)	392, 514
HindII	GTYRAC	2 cut(s)	392, 514
HinfI	GANTC	3 cut(s)	170, 619, 767
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	3 cut(s)	245, 362, 544
Hpy166II	GTNNAC	2 cut(s)	392, 514
Hpy188I	TCNGA	5 cut(s)	297, 346, 401, 772, 785
Hpy188III	TCNNGA	8 cut(s)	103, 148, 259, 460, 472, 493, 521, 692
Hpy8I	GTNNAC	2 cut(s)	392, 514
HpyAV	CCTTC	3 cut(s)	277, 341, 757
HpyCH4III	ACNGT	3 cut(s)	40, 127, 506
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	583, 662
HpyF3I	CTNAG	5 cut(s)	165, 327, 666, 678, 759
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	95, 251
HspAI	GCGC	2 cut(s)	17, 78
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	334
Lsp1109I	GCAGC	3 cut(s)	309, 668, 718
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	381, 440
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	5 cut(s)	40, 157, 233, 560, 737
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	5 cut(s)	202, 595, 625, 628, 707
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	9
MluNI	TGGCCA	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	9 cut(s)	80, 110, 266, 377, 589, 627, 630, 673, 707
Mox20I	TGGCCA	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	687
MscI	TGGCCA	1 cut(s)	9
MseI	TTAA	2 cut(s)	122, 267
MslI	CAYNNNNRTG	1 cut(s)	704
Msp20I	TGGCCA	1 cut(s)	9
MspI	CCGG	1 cut(s)	372
MvnI	CGCG	2 cut(s)	17, 19
MwoI	GCNNNNNNNGC	2 cut(s)	583, 662
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	2 cut(s)	95, 251
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	257
PciI	ACATGT	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	2 cut(s)	619, 767
PflFI	GACNNNGTC	2 cut(s)	196, 239
PinAI	ACCGGT	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	324, 658, 733
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PscI	ACATGT	1 cut(s)	247
Psp1406I	AACGTT	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	397
PsyI	GACNNNGTC	2 cut(s)	196, 239
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	2 cut(s)	122, 267
SatI	GCNGC	3 cut(s)	323, 657, 732
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	142
SfaNI	GCATC	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	4 cut(s)	101, 146, 257, 587
SmoI	CTYRAG	4 cut(s)	101, 146, 257, 587
SspMI	CTAG	2 cut(s)	381, 440
TaaI	ACNGT	3 cut(s)	40, 127, 506
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	3 cut(s)	258, 645, 722
TfiI	GAWTC	2 cut(s)	619, 767
Tru1I	TTAA	2 cut(s)	122, 267
Tru9I	TTAA	2 cut(s)	122, 267
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	322, 656, 731
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	74, 203, 498
TspRI	CASTG	1 cut(s)	43
Tth111I	GACNNNGTC	2 cut(s)	196, 239
VpaK11BI	GGWCC	1 cut(s)	397
XceI	RCATGY	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	2 cut(s)	381, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.