Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Forward (+)

5712711 .. 5713445

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCTTGGAGTTATGAAAGCTCGCCTTGTTGGTGCAACAAGAGGTCATGCTCTCCTCAAGAAGAAGAGCGATGCTTTAACAGTGCAGTTTCGTCAGATTCTTAAAAATATTGTGTCGACCAAAGAATCCATGGGAGATGTCATGAAAAACTCCTCCTTTGCCCTTACTGAAGCCAAGTACGTTGCTGGCGAGAACATCAAGCACATCGTTCTCGAGAATGTCCACAATGCCACTATTAAAGTTCGATCAAGGCAAGAGAATGTTGCTGGTGTAAAGCTCCCAAAGTTCGACTATTTTACCGAAGGTGAGGCCAAGAACGACCTCACTGGATTGGCAAGAGGTGGACAACAGGTCCAGCTCTGCCGTGCTGCTTATGTGAAAGCAATCGAGGTTCTCGTGGAGCTTGCTTCACTTCAAACATCATTTTTAACCCTTGACGAAGCTATCAAGACCACAAACCGTCGTGTCAATGCTCTGGAGAACGTTGTGAAGCCTAGGTTGGAGAATACAATAAGCTATATCAAGGGGGAGTTGGATGAGCTCGAAAGAGAGGACTTCTTCAGGCTGAAAAAGATACAGGGTTATAAAAAGCGAGAAATTGAGAGACAAATGGCAGCAGCCAGGAACTTTGCCAACGAGCAGGTTGCGGAAAAGTTATCGCTGAAGAAGGGCATTTCCCTAAATTCAGCTCAGAACTTGTTGTCTGCGGAGAAGGACGACGACATCATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

245

Amino Acids

27.37

Weight (kDa)

9.5

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_D	PF01813	2 - 193	6.5e-69	ATP synthase subunit D

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
Acc36I	ACCTGC	1 cut(s)	631
AccI	GTMKAC	1 cut(s)	116
AciI	CCGC	2 cut(s)	647, 707
AclI	AACGTT	1 cut(s)	483
AcsI	RAATTY	1 cut(s)	682
AcuI	CTGAAG	3 cut(s)	189, 544, 683
AfaI	GTAC	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	416
AhdI	GACNNNNNGTC	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	620
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	8 cut(s)	20, 277, 358, 403, 443, 516, 541, 689
AluI	AGCT	8 cut(s)	20, 277, 358, 403, 443, 516, 541, 689
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	598
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	3 cut(s)	368, 614, 617
ApoI	RAATTY	1 cut(s)	682
AspA2I	CCTAGG	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	352
AvrII	CCTAGG	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	543
BauI	CACGAG	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	3 cut(s)	355, 626, 629
BceAI	ACGGC	1 cut(s)	348
BcgI	CGANNNNNNTGC	2 cut(s)	626, 660
BciT130I	CCWGG	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	598
BfaI	CTAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	631
BisI	GCNGC	3 cut(s)	369, 615, 618
BlnI	CCTAGG	1 cut(s)	494
BlsI	GCNGC	3 cut(s)	370, 616, 619
Bme1390I	CCNGG	1 cut(s)	622
Bme18I	GGWCC	1 cut(s)	352
BmeRI	GACNNNNNGTC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	622
BmsI	GCATC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	129, 494
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	622
BseDI	CCNNGG	2 cut(s)	129, 494
BseGI	GGATG	1 cut(s)	541
BseMII	CTCAG	1 cut(s)	704
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	44, 142
BseXI	GCAGC	3 cut(s)	355, 626, 629
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	598
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	245
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	2 cut(s)	647, 707
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	703
BspHI	TCATGA	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	631
BspQI	GCTCTTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	129, 494
BssMI	GATC	1 cut(s)	245
BssSI	CACGAG	1 cut(s)	395
BssT1I	CCWWGG	2 cut(s)	129, 494
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	2 cut(s)	82, 461
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	22, 187, 405
BstDEI	CTNAG	1 cut(s)	690
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	1 cut(s)	248
BstMAI	GTCTC	1 cut(s)	598
BstMBI	GATC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	622
BstSCI	CCNGG	1 cut(s)	620
BstV1I	GCAGC	3 cut(s)	355, 626, 629
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	87, 324
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	3 cut(s)	22, 187, 405
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	47, 130, 142
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	690
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
DriI	GACNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	59
Eam1105I	GACNNNNNGTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	541
Eco130I	CCWWGG	2 cut(s)	129, 494
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	541
Eco57I	CTGAAG	3 cut(s)	189, 544, 683
Eco88I	CYCGRG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	620
EcoT14I	CCWWGG	2 cut(s)	129, 494
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	2 cut(s)	129, 494
FaeI	CATG	3 cut(s)	50, 133, 145
FaiI	YATR	7 cut(s)	14, 48, 131, 143, 375, 519, 585
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FatI	CATG	3 cut(s)	46, 129, 141
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	3 cut(s)	369, 615, 618
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	3 cut(s)	369, 615, 618
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	3 cut(s)	369, 615, 618
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	311
Hin1II	CATG	3 cut(s)	50, 133, 145
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	97, 125
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	3 cut(s)	117, 223, 344
Hpy188I	TCNGA	3 cut(s)	96, 693, 734
Hpy188III	TCNNGA	6 cut(s)	58, 142, 212, 214, 448, 476
Hpy8I	GTNNAC	3 cut(s)	117, 223, 344
Hpy99I	CGWCG	2 cut(s)	465, 722
HpyAV	CCTTC	3 cut(s)	296, 661, 706
HpyCH4III	ACNGT	2 cut(s)	82, 461
HpyCH4IV	ACGT	2 cut(s)	180, 483
HpyCH4V	TGCA	2 cut(s)	35, 85
HpyF3I	CTNAG	1 cut(s)	690
HpySE526I	ACGT	2 cut(s)	180, 483
Hsp92II	CATG	3 cut(s)	50, 133, 145
Kzo9I	GATC	1 cut(s)	245
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	282, 400
Lsp1109I	GCAGC	3 cut(s)	355, 626, 629
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	2 cut(s)	180, 483
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	4 cut(s)	73, 76, 550, 676
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	2 cut(s)	597, 682
MmeI	TCCRAC	2 cut(s)	480, 513
MnlI	CCTC	8 cut(s)	35, 65, 163, 301, 332, 332, 382, 544
MseI	TTAA	4 cut(s)	77, 102, 237, 428
MspR9I	CCNGG	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	622
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	50, 133, 145
PaeR7I	CTCGAG	1 cut(s)	212
PagI	TCATGA	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 393
PfeI	GAWTC	2 cut(s)	97, 125
PkrI	GCNGC	3 cut(s)	370, 616, 619
PsiI	TTATAA	1 cut(s)	585
Psp124BI	GAGCTC	1 cut(s)	543
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	620
PspPI	GGNCC	1 cut(s)	352
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	543
SalI	GTCGAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	4 cut(s)	77, 102, 237, 428
SatI	GCNGC	3 cut(s)	369, 615, 618
Sau3AI	GATC	1 cut(s)	245
Sau96I	GGNCC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	622
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	61
Sfr274I	CTCGAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	352
SlaI	CTCGAG	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	56, 212
SmoI	CTYRAG	2 cut(s)	56, 212
Sse9I	AATT	2 cut(s)	597, 682
SsiI	CCGC	2 cut(s)	647, 707
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	495
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	620
StyI	CCWWGG	2 cut(s)	129, 494
TaaI	ACNGT	2 cut(s)	82, 461
TaiI	ACGT	2 cut(s)	183, 486
TaqI	TCGA	6 cut(s)	116, 213, 244, 288, 387, 543
TasI	AATT	2 cut(s)	597, 682
TfiI	GAWTC	2 cut(s)	97, 125
Tru1I	TTAA	4 cut(s)	77, 102, 237, 428
Tru9I	TTAA	4 cut(s)	77, 102, 237, 428
TscAI	CASTG	2 cut(s)	87, 331
TseI	GCWGC	3 cut(s)	368, 614, 617
TspDTI	ATGAA	2 cut(s)	29, 158
TspRI	CASTG	2 cut(s)	87, 331
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XhoI	CTCGAG	1 cut(s)	212
XmaJI	CCTAGG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.