Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003127.1

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Reverse (-)

64323 .. 65108

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003127.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgtctgggcaaagccagcgtttgaatgtggttcctactattataatgcttggaattacgaaagctcgtcctgttggtgcgacgagaggtcatgctctcctcaagaagaagagtgatgctctaactgtgcagtttcgtgtcattcttaaaaagattgtgtcaactaaagaatcaatgggagatattatgaaaacctcctccttcgcccttactgaagccaagtatgttgctggtgagaacatcaaacacattgttcttgagaatgtcaacactgcctctcttaaagttcgatcaaagcaagagaatgttgctggtgttcaactgtgcaaggctgcttatgtgaaagcaattgaggttcttgtggagcttgcttcacttcaaacatcatttttaacccttgatgaagcaatgaagagcacaaatcgcagggtcaatgctttggagaatgtggtgaagcctaggttggagaatacaataacttatatcaagggggagttggatgagctggaaagggaggacttcttcaggttaacgaagatacagggatttaagaagagggaacttgagagacagatggcagctgctaagaacttctcggacgaccaggttgcagaagttatgtctttaaagaagggtatttcactaaattcagctcaaaatttgttgtctggaggtatgggaaaggacgaggatatcattttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

234

Amino Acids

25.93

Weight (kDa)

9.56

Isoelectric Point (pI)

28.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	646, 658
AcuI	CTGAAG	2 cut(s)	234, 508
AgsI	TTSAA	3 cut(s)	25, 320, 380
AhdI	GACNNNNNGTC	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	603
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	5 cut(s)	65, 367, 505, 581, 653
AluI	AGCT	5 cut(s)	65, 367, 505, 581, 653
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	1 cut(s)	562
ApeKI	GCWGC	3 cut(s)	332, 578, 581
ApoI	RAATTY	2 cut(s)	646, 658
AspA2I	CCTAGG	1 cut(s)	458
AsuHPI	GGTGA	2 cut(s)	245, 463
AvrII	CCTAGG	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	419
BbvI	GCAGC	3 cut(s)	319, 568, 590
BccI	CCATC	1 cut(s)	568
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	1 cut(s)	605
BcoDI	GTCTC	1 cut(s)	562
BfaI	CTAG	1 cut(s)	459
BisI	GCNGC	3 cut(s)	333, 579, 582
BlnI	CCTAGG	1 cut(s)	458
BlsI	GCNGC	3 cut(s)	334, 580, 583
Bme1390I	CCNGG	1 cut(s)	605
BmeRI	GACNNNNNGTC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	605
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	3 cut(s)	86, 278, 584
BsaJI	CCNNGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	505
BseMI	GCAATG	1 cut(s)	414
BseRI	GAGGAG	2 cut(s)	89, 187
BseXI	GCAGC	3 cut(s)	319, 568, 590
BsgI	GTGCAG	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	33
BspQI	GCTCTTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	2 cut(s)	127, 324
Bst6I	CTCTTC	3 cut(s)	104, 407, 548
BstC8I	GCNNGC	2 cut(s)	17, 369
BstDEI	CTNAG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 423
BstNI	CCWGG	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	603
BstV1I	GCAGC	3 cut(s)	319, 568, 590
BtsCI	GGATG	1 cut(s)	505
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	17, 369
CsiI	ACCWGGT	1 cut(s)	603
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	9 cut(s)	15, 65, 218, 332, 367, 457, 505, 581, 653
CviKI_1	RGCY	9 cut(s)	15, 65, 218, 332, 367, 457, 505, 581, 653
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
DraI	TTTAAA	1 cut(s)	627
DriI	GACNNNNNGTC	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	104, 407, 548
Eam1105I	GACNNNNNGTC	1 cut(s)	87
EarI	CTCTTC	3 cut(s)	104, 407, 548
Eco130I	CCWWGG	1 cut(s)	458
Eco32I	GATATC	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	234, 508
EcoRII	CCWGG	1 cut(s)	603
EcoRV	GATATC	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	1 cut(s)	95
FaiI	YATR	8 cut(s)	44, 93, 188, 225, 339, 483, 620, 677
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	333, 579, 582
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	3 cut(s)	333, 579, 582
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	3 cut(s)	333, 579, 582
GsuI	CTGGAG	1 cut(s)	690
Hin1II	CATG	1 cut(s)	95
HincII	GTYRAC	3 cut(s)	162, 268, 531
HindII	GTYRAC	3 cut(s)	162, 268, 531
HinfI	GANTC	1 cut(s)	170
HpaI	GTTAAC	1 cut(s)	531
HphI	GGTGA	2 cut(s)	245, 463
Hpy166II	GTNNAC	3 cut(s)	162, 268, 531
Hpy188I	TCNGA	2 cut(s)	598, 704
Hpy188III	TCNNGA	3 cut(s)	103, 257, 669
Hpy8I	GTNNAC	3 cut(s)	162, 268, 531
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	211, 625
HpyCH4III	ACNGT	2 cut(s)	127, 324
HpyCH4V	TGCA	3 cut(s)	130, 327, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 423
HpyF3I	CTNAG	1 cut(s)	585
Hsp92II	CATG	1 cut(s)	95
KspAI	GTTAAC	1 cut(s)	531
Kzo9I	GATC	1 cut(s)	290
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	3 cut(s)	319, 568, 590
LweI	GCATC	1 cut(s)	106
MabI	ACCWGGT	1 cut(s)	603
MaeI	CTAG	1 cut(s)	459
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	6 cut(s)	118, 121, 424, 514, 547, 565
MfeI	CAATTG	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	4 cut(s)	54, 348, 646, 658
MmeI	TCCRAC	2 cut(s)	444, 477
MseI	TTAA	6 cut(s)	147, 282, 392, 530, 549, 626
MspA1I	CMGCKG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	605
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	2 cut(s)	16, 423
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	334, 580, 583
PsiI	TTATAA	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	581
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	6 cut(s)	147, 282, 392, 530, 549, 626
SatI	GCNGC	3 cut(s)	333, 579, 582
Sau3AI	GATC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	605
SduI	GDGCHC	1 cut(s)	419
SexAI	ACCWGGT	1 cut(s)	603
SfaNI	GCATC	1 cut(s)	106
SmlI	CTYRAG	3 cut(s)	101, 257, 563
SmoI	CTYRAG	3 cut(s)	101, 257, 563
Sse9I	AATT	4 cut(s)	54, 348, 646, 658
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	603
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	2 cut(s)	127, 324
TaqI	TCGA	1 cut(s)	289
TasI	AATT	4 cut(s)	54, 348, 646, 658
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	6 cut(s)	147, 282, 392, 530, 549, 626
Tru9I	TTAA	6 cut(s)	147, 282, 392, 530, 549, 626
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	3 cut(s)	332, 578, 581
TspDTI	ATGAA	3 cut(s)	203, 417, 425
TspRI	CASTG	1 cut(s)	277
XapI	RAATTY	2 cut(s)	646, 658
XmaJI	CCTAGG	1 cut(s)	458
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.