Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009104.1

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Reverse (-)

33921 .. 34520

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009104.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgaaaacctcctccttcgcccttactgaagccaagtatgttgctggtgagaacatcaaacacattgttctcgagaatgtcaacactgcctctcttaaagttcgatcaaagcaagagaatgttgctggtgtaaagctcccaaaatttgaatactttactgaaggtgagaccaagaacgacctcactggattagccagaggtggacaacaggttcaactgtgcaaggctgcttatgtgaaagcaattgaggctcttatggagcttgcttcacttcaaacatcatttttaacccttgatgaagctatcaagagcacaaatcgcagggtcaatgctctggagaatgtggtgaagcctaggttcgagaatacaataacttatatcaagggggagttggatgagctggaaagggaggacttcttcaggttaaagaagttacagggatttaagaagagggaaattgagagacagatggcagctgctaagaacttctcggacgaccaggctgcagaagttatgtctttaaagaagggtatttcactaaattcagctcaaaatttgttgtctggatgtatgggaaaggacgaggatatcattttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

199

Amino Acids

22.29

Weight (kDa)

8.41

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	143, 541, 553
AcuI	CTGAAG	3 cut(s)	48, 180, 403
AgsI	TTSAA	3 cut(s)	149, 215, 275
AjnI	CCWGG	1 cut(s)	498
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	6 cut(s)	136, 262, 302, 400, 476, 548
AluI	AGCT	6 cut(s)	136, 262, 302, 400, 476, 548
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	2 cut(s)	161, 457
Ama87I	CYCGRG	1 cut(s)	71
ApeKI	GCWGC	4 cut(s)	227, 473, 476, 503
ApoI	RAATTY	3 cut(s)	143, 541, 553
AspA2I	CCTAGG	1 cut(s)	353
AsuHPI	GGTGA	3 cut(s)	59, 176, 358
AvaI	CYCGRG	1 cut(s)	71
AvrII	CCTAGG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	4 cut(s)	214, 463, 485, 490
BccI	CCATC	1 cut(s)	463
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BciT130I	CCWGG	1 cut(s)	500
BcoDI	GTCTC	2 cut(s)	161, 457
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	4 cut(s)	228, 474, 477, 504
BlnI	CCTAGG	1 cut(s)	353
BlsI	GCNGC	4 cut(s)	229, 475, 478, 505
Bme1390I	CCNGG	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	400, 572
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	4 cut(s)	214, 463, 485, 490
BsiHKAI	GWGCWC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	161, 457
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	508
BspTNI	GGTCTC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	2 cut(s)	400, 572
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	2 cut(s)	161, 457
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 318
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	4 cut(s)	214, 463, 485, 490
BtsCI	GGATG	2 cut(s)	400, 572
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 183
Cac8I	GCNNGC	1 cut(s)	264
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
DraI	TTTAAA	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	589
Eco57I	CTGAAG	3 cut(s)	48, 180, 403
Eco88I	CYCGRG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
FaiI	YATR	6 cut(s)	39, 234, 257, 378, 515, 572
Fnu4HI	GCNGC	4 cut(s)	228, 474, 477, 504
FokI	GGATG	2 cut(s)	407, 579
Fsp4HI	GCNGC	4 cut(s)	228, 474, 477, 504
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	4 cut(s)	228, 474, 477, 504
GsuI	CTGGAG	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HphI	GGTGA	3 cut(s)	59, 176, 358
Hpy166II	GTNNAC	2 cut(s)	82, 203
Hpy188I	TCNGA	2 cut(s)	493, 599
Hpy188III	TCNNGA	6 cut(s)	71, 73, 307, 335, 361, 564
Hpy8I	GTNNAC	2 cut(s)	82, 203
HpyAV	CCTTC	3 cut(s)	25, 155, 520
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	2 cut(s)	222, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 318
HpyF3I	CTNAG	1 cut(s)	480
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	141, 259
Lsp1109I	GCAGC	4 cut(s)	214, 463, 485, 490
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	2 cut(s)	409, 460
MfeI	CAATTG	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	5 cut(s)	143, 243, 456, 541, 553
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	9 cut(s)	19, 22, 100, 191, 191, 241, 403, 444, 577
MseI	TTAA	5 cut(s)	96, 287, 425, 444, 521
MspA1I	CMGCKG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	500
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	2 cut(s)	248, 318
NdeII	GATC	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	229, 475, 478, 505
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PstI	CTGCAG	1 cut(s)	508
PvuII	CAGCTG	1 cut(s)	476
SaqAI	TTAA	5 cut(s)	96, 287, 425, 444, 521
SatI	GCNGC	4 cut(s)	228, 474, 477, 504
Sau3AI	GATC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	314
SfcI	CTRYAG	1 cut(s)	504
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	5 cut(s)	143, 243, 456, 541, 553
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	72, 103, 360
TasI	AATT	5 cut(s)	143, 243, 456, 541, 553
Tru1I	TTAA	5 cut(s)	96, 287, 425, 444, 521
Tru9I	TTAA	5 cut(s)	96, 287, 425, 444, 521
TscAI	CASTG	2 cut(s)	91, 190
TseI	GCWGC	4 cut(s)	227, 473, 476, 503
TspDTI	ATGAA	2 cut(s)	17, 312
TspRI	CASTG	2 cut(s)	91, 190
XapI	RAATTY	3 cut(s)	143, 541, 553
XhoI	CTCGAG	1 cut(s)	71
XmaJI	CCTAGG	1 cut(s)	353
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.