Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009104.1

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Reverse (-)

83498 .. 84109

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009104.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgggagatattatgaaaacctcctcctttgcccttactgaagccaagtatgttgctggtgagaacatcaaacacattgttctcgagaatgtcaacactgcctctcttaaagttcgatcaaagcaagagaatgttgctggtgtaaagctcccaaaatttgaatactttactgaaggtgagaccaagaacgacctcactggattggccagaggtggacaacaggttcaactgtgcaaggctgcttatgtgaaagcaattgaggttcttgtggagcttgcttcacttcaaacatcatttttaacccttgatgaagcaatcaagagcacaaatcgcagggtcaatgctctggagaatgtggtgaagcctaggttggagaatacaataacttatatcaagggggagttggatgagctggaaagggaggacttcttcaggttaaagaagatacagggatttaagaagagggaaattgagagacagatggcagctgctaagaacttctcggatgaccaggctgcagaagttatttctttaaagaagggtatttcactaaattcagctcaaaatttattgtctggaggtatgggaaaggacgaggatatcattttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

203

Amino Acids

22.61

Weight (kDa)

7.73

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	3 cut(s)	155, 553, 565
AcuI	CTGAAG	3 cut(s)	60, 192, 415
AgsI	TTSAA	3 cut(s)	161, 227, 287
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	5 cut(s)	148, 274, 412, 488, 560
AluI	AGCT	5 cut(s)	148, 274, 412, 488, 560
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	2 cut(s)	173, 469
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	4 cut(s)	239, 485, 488, 515
ApoI	RAATTY	3 cut(s)	155, 553, 565
AspA2I	CCTAGG	1 cut(s)	365
AsuHPI	GGTGA	3 cut(s)	71, 188, 370
AvaI	CYCGRG	1 cut(s)	83
AvrII	CCTAGG	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	4 cut(s)	226, 475, 497, 502
BccI	CCATC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	173, 469
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	4 cut(s)	240, 486, 489, 516
BlnI	CCTAGG	1 cut(s)	365
BlsI	GCNGC	4 cut(s)	241, 487, 490, 517
Bme1390I	CCNGG	1 cut(s)	512
BmeT110I	CYCGRG	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	512
BpmI	CTGGAG	2 cut(s)	368, 597
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	412, 511
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	4 cut(s)	226, 475, 497, 502
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	173, 469
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	173
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	206
BspMAI	CTGCAG	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	412, 511
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	2 cut(s)	173, 469
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	4 cut(s)	226, 475, 497, 502
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	412, 511
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 195
Cac8I	GCNNGC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
DraI	TTTAAA	1 cut(s)	534
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	601
Eco57I	CTGAAG	3 cut(s)	60, 192, 415
Eco88I	CYCGRG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaiI	YATR	5 cut(s)	14, 51, 246, 390, 584
Fnu4HI	GCNGC	4 cut(s)	240, 486, 489, 516
FokI	GGATG	2 cut(s)	419, 518
Fsp4HI	GCNGC	4 cut(s)	240, 486, 489, 516
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	4 cut(s)	240, 486, 489, 516
GsuI	CTGGAG	2 cut(s)	368, 597
HaeIII	GGCC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HphI	GGTGA	3 cut(s)	71, 188, 370
Hpy166II	GTNNAC	2 cut(s)	94, 215
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	5 cut(s)	83, 85, 319, 347, 576
Hpy8I	GTNNAC	2 cut(s)	94, 215
HpyAV	CCTTC	2 cut(s)	167, 532
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	234, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	1 cut(s)	492
Kzo9I	GATC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	153, 271
Lsp1109I	GCAGC	4 cut(s)	226, 475, 497, 502
MaeI	CTAG	1 cut(s)	366
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	3 cut(s)	421, 454, 472
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	5 cut(s)	155, 255, 468, 553, 565
MluNI	TGGCCA	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	351, 384
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	5 cut(s)	108, 299, 437, 456, 533
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	83
PkrI	GCNGC	4 cut(s)	241, 487, 490, 517
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PstI	CTGCAG	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	488
SaqAI	TTAA	5 cut(s)	108, 299, 437, 456, 533
SatI	GCNGC	4 cut(s)	240, 486, 489, 516
Sau3AI	GATC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	326
SfcI	CTRYAG	1 cut(s)	516
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	5 cut(s)	155, 255, 468, 553, 565
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	84, 115
TasI	AATT	5 cut(s)	155, 255, 468, 553, 565
Tru1I	TTAA	5 cut(s)	108, 299, 437, 456, 533
Tru9I	TTAA	5 cut(s)	108, 299, 437, 456, 533
TscAI	CASTG	2 cut(s)	103, 202
TseI	GCWGC	4 cut(s)	239, 485, 488, 515
TspDTI	ATGAA	2 cut(s)	29, 324
TspRI	CASTG	2 cut(s)	103, 202
XapI	RAATTY	3 cut(s)	155, 553, 565
XhoI	CTCGAG	1 cut(s)	83
XmaJI	CCTAGG	1 cut(s)	365
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.