Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Reverse (-)

64938241 .. 64938954

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCTGGGCAAAGCCAGCGTTTGAATGTGGTTCCCACTGTTACAATGCTTGGAATTATGAAAGCTCGTCTTGTTGGTGCGACAAGAGGCCATGCTCTCCTCAAGAAGAAGAGTGATGCTCTAACTGTTCAGTTTCGTGCCATTCTTAAAAAGATTGTGTCATCCAAAGAATCAATGGGAGATATTATGAAAACCTCCTCCTTCGCCCTTACTGAAGCCAAGTATGTTGCTGGTGAGAACATCAAACATATTGTTCTCGAGAATGTCAACACTGCCTCTCTTAAAGTTCGATCAAAGCAAGAGAATGTTGCTGGTGTAAAGCTCCCAAAATTTGAATACTTTACTGAAGGTGAGACCAAGAACGACCTCACTGGATTGGCCAGAGGTGGACAACAGGTTCAACTGTGCAAGGCTGCTTATGTGAAAGCAATTGAGGTTCTTGTGGAGCTTGCTTCACTTCAAACATCATTTTTAACCCTTGATGAAGCAATCAAGAGCACAAATCGCAGGGTCAATGCTCTGGAGAATGTGGTGAAGCCTAGGTTGGAGAATACAATAACTTATATCAAGGGGGAGTTGGATGAGCTGGAAAGGGAGGACTTCTTCAGGTTAAAGAAGATACAGGGATTTAAGAAGAGGGAAATTGTCAAATTGAGAGACAGATGGCAGCTGCTAAGAACTTCGACGACCAGGCTGCAGAAGTTATTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

237

Amino Acids

26.74

Weight (kDa)

10.0

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_D	PF01813	17 - 208	6.3e-68	ATP synthase subunit D

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	3 cut(s)	234, 366, 589
AgsI	TTSAA	4 cut(s)	25, 335, 401, 461
AjnI	CCWGG	1 cut(s)	689
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	5 cut(s)	65, 322, 448, 586, 670
AluI	AGCT	5 cut(s)	65, 322, 448, 586, 670
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	2 cut(s)	347, 651
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	88, 378
ApeKI	GCWGC	4 cut(s)	413, 667, 670, 694
ApoI	RAATTY	1 cut(s)	329
AspA2I	CCTAGG	1 cut(s)	539
AsuHPI	GGTGA	3 cut(s)	245, 362, 544
AvaI	CYCGRG	1 cut(s)	257
AvrII	CCTAGG	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	4 cut(s)	400, 657, 679, 681
BccI	CCATC	1 cut(s)	657
BcgI	CGANNNNNNTGC	2 cut(s)	676, 710
BciT130I	CCWGG	1 cut(s)	691
BcoDI	GTCTC	2 cut(s)	347, 651
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	695
BisI	GCNGC	4 cut(s)	414, 668, 671, 695
BlnI	CCTAGG	1 cut(s)	539
BlsI	GCNGC	4 cut(s)	415, 669, 672, 696
Bme1390I	CCNGG	1 cut(s)	691
BmeT110I	CYCGRG	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	691
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	691
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	2 cut(s)	161, 586
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	2 cut(s)	89, 187
BseXI	GCAGC	4 cut(s)	400, 657, 679, 681
BshFI	GGCC	2 cut(s)	90, 380
BsiHKAI	GWGCWC	1 cut(s)	500
BsiHKCI	CYCGRG	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	347, 651
BsnI	GGCC	2 cut(s)	90, 380
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	90, 380
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	699
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	539
Bst2UI	CCWGG	1 cut(s)	691
Bst4CI	ACNGT	3 cut(s)	40, 127, 405
Bst6I	CTCTTC	2 cut(s)	104, 629
BstC8I	GCNNGC	2 cut(s)	17, 450
BstDEI	CTNAG	1 cut(s)	674
BstF5I	GGATG	2 cut(s)	161, 586
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	2 cut(s)	347, 651
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 504
BstNI	CCWGG	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	689
BstSFI	CTRYAG	1 cut(s)	695
BstV1I	GCAGC	4 cut(s)	400, 657, 679, 681
BsuRI	GGCC	2 cut(s)	90, 380
BtsCI	GGATG	2 cut(s)	161, 586
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	3 cut(s)	36, 270, 369
Cac8I	GCNNGC	2 cut(s)	17, 450
CviAII	CATG	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	674
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	104, 629
EarI	CTCTTC	2 cut(s)	104, 629
Eco130I	CCWWGG	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	347
Eco57I	CTGAAG	3 cut(s)	234, 366, 589
Eco88I	CYCGRG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	689
EcoT14I	CCWWGG	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	1 cut(s)	95
FaiI	YATR	7 cut(s)	59, 93, 188, 225, 249, 420, 564
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	414, 668, 671, 695
FokI	GGATG	2 cut(s)	148, 593
Fsp4HI	GCNGC	4 cut(s)	414, 668, 671, 695
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	4 cut(s)	414, 668, 671, 695
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	2 cut(s)	90, 380
Hin1II	CATG	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	3 cut(s)	245, 362, 544
Hpy166II	GTNNAC	2 cut(s)	268, 389
Hpy188III	TCNNGA	5 cut(s)	103, 257, 259, 493, 521
Hpy8I	GTNNAC	2 cut(s)	268, 389
Hpy99I	CGWCG	1 cut(s)	688
HpyAV	CCTTC	2 cut(s)	211, 341
HpyCH4III	ACNGT	3 cut(s)	40, 127, 405
HpyCH4V	TGCA	2 cut(s)	408, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 504
HpyF3I	CTNAG	1 cut(s)	674
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	327, 445
Lsp1109I	GCAGC	4 cut(s)	400, 657, 679, 681
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	5 cut(s)	118, 121, 595, 628, 646
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	500
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	5 cut(s)	54, 329, 429, 642, 650
MluNI	TGGCCA	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	525, 558
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	6 cut(s)	147, 282, 473, 611, 630, 712
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	670
MspR9I	CCNGG	1 cut(s)	691
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	691
MwoI	GCNNNNNNNGC	2 cut(s)	16, 504
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	415, 669, 672, 696
Psp6I	CCWGG	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	689
PspN4I	GGNNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	699
PvuII	CAGCTG	1 cut(s)	670
SaqAI	TTAA	6 cut(s)	147, 282, 473, 611, 630, 712
SatI	GCNGC	4 cut(s)	414, 668, 671, 695
Sau3AI	GATC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	691
SduI	GDGCHC	1 cut(s)	500
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	695
Sfr274I	CTCGAG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	101, 257
SmoI	CTYRAG	2 cut(s)	101, 257
Sse9I	AATT	5 cut(s)	54, 329, 429, 642, 650
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	689
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	3 cut(s)	40, 127, 405
TaqI	TCGA	3 cut(s)	258, 289, 683
TasI	AATT	5 cut(s)	54, 329, 429, 642, 650
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	6 cut(s)	147, 282, 473, 611, 630, 712
Tru9I	TTAA	6 cut(s)	147, 282, 473, 611, 630, 712
TscAI	CASTG	3 cut(s)	43, 277, 376
TseI	GCWGC	4 cut(s)	413, 667, 670, 694
TspDTI	ATGAA	3 cut(s)	74, 203, 498
TspRI	CASTG	3 cut(s)	43, 277, 376
XapI	RAATTY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	257
XmaJI	CCTAGG	1 cut(s)	539
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.