Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Reverse (-)

54302367 .. 54314255

Gene Structure 11889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0422500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCACAGCAACCACAGTCCCCGCGATTTTGTCTCCTTCAATTTCGGCGACTCCCTCAGCTCACCGCTGCCGCCAACGTGTTTGGATCAAGCCAAGCCACAAAACCCAAATGTTTCTCCTCCAATCGACGCCGGAAAGCTGCTATATGCATCACTGCCGGTGACTCCGAATCTGCTTGTCCTCGTTCTCCAATCTCCAGCCCAAATTGAGCTGCACAACCACCAAAGTTGGAATCAGAGCCTCCTCATTCTTCAAAACCCTTTGGTCCCGACCTTTGCTTCGGCCAGAACCGTTGCACGCGCTGCCGCTGCCGTGTGGACCACCGTGGCTCCGCCACCGGAATTCCAGGCCACCTTTATTATTTTTGGAGAAAGGAATGGGCATTGGTTCAGTTTGATGTATAATGAAGGAAGGAAGGAGTTCGAATGGTTGTTGGTGGTGGAGGACTACACTTATTTAGAATTGGCCCTCTGTTTGAAGATGAAGAATTGTATTTTCCAGGGTTACTGTCTCTGTGACAGTAATTCTGTAGCCCAGTATCCTATCGCTACACTTAGTGGCGTAAGGAGCTGCTCTGATAACCTGTGGGATTCATGTTATCAAGTTATCAAGTTGATAGTTGTACTTTTTGAAATGGAAGTTGATGTTATTTGGGGAGCAGGGCGGCTCCAGGAGAATAAGGGTGGGCCCCGCAGGGTCACTCCGGATTTCGGGGTGAAATCCGGGGCGGGTCCCGTCATTACGGCTCCCATGTTGTTCTTTGACTCAACCCCTGTTGGGCGGATTCTTACACGAGCTTCATCAGATTTAAGTGTATTGGATTTTGACATACTGTTCTCTATTATCTTTGCTTTGACCGCTGGTATTGATGTGCTCACAGTCATTGGAATTATGGCTTCTATCACATGGCAAGTTCTCATTGTAGCCATTCCTTCCATGTTTGCTGTTCAATATGCTCAGAATTATTATCTAGCCTCTGCAAGGGAACTAATAAGGATCAATGGAACAACCAAAGCTCATGTCATCAACCATGCAGCTAAGACATCACTTGGAGTCATGACTATAAGAGCTTTTAACATGGTTGACAGGTATTTATTCATGCAGTTGTCCATTTTTCATACCGAGGAATTTGAAGGAGTAAGAGTTTTGCCTCCTTTCAGCAATTGTAGAGCACAAAAGGCCACCATCTTCATGGCCTCAAAAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

402

Amino Acids

44.54

Weight (kDa)

6.45

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	247 - 363	2.6e-12	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	24, 300
AccIII	TCCGGA	1 cut(s)	703
AclWI	GGATC	2 cut(s)	93, 1004
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	341, 1127
AcyI	GRCGYC	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	4 cut(s)	710, 777, 981, 1203
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	6 cut(s)	40, 254, 478, 632, 950, 1133
AjnI	CCWGG	3 cut(s)	345, 498, 669
AluBI	AGCT	8 cut(s)	60, 139, 211, 570, 797, 1016, 1037, 1070
AluI	AGCT	8 cut(s)	60, 139, 211, 570, 797, 1016, 1037, 1070
Alw21I	GWGCWC	2 cut(s)	876, 1174
Alw26I	GTCTC	2 cut(s)	37, 515
AlwI	GGATC	2 cut(s)	93, 1004
Aor13HI	TCCGGA	1 cut(s)	703
AoxI	GGCC	6 cut(s)	282, 348, 465, 686, 1179, 1194
ApaI	GGGCCC	1 cut(s)	690
ApeKI	GCWGC	7 cut(s)	67, 139, 211, 302, 308, 570, 1034
ApoI	RAATTY	2 cut(s)	341, 1127
ArsI	GACNNNNNNTTYG	4 cut(s)	262, 294, 1005, 1037
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	6 cut(s)	265, 318, 466, 686, 687, 731
AsuC2I	CCSGG	1 cut(s)	724
AsuHPI	GGTGA	3 cut(s)	54, 172, 727
AsuII	TTCGAA	1 cut(s)	423
AvaII	GGWCC	3 cut(s)	265, 318, 731
BaeGI	GKGCMC	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	690
BauI	CACGAG	1 cut(s)	792
Bbv12I	GWGCWC	2 cut(s)	876, 1174
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	7 cut(s)	54, 126, 198, 289, 295, 557, 1046
BccI	CCATC	1 cut(s)	1193
BceAI	ACGGC	2 cut(s)	296, 759
BciT130I	CCWGG	3 cut(s)	347, 500, 671
BciVI	GTATCC	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	724
BcoDI	GTCTC	2 cut(s)	37, 515
BfaI	CTAG	1 cut(s)	971
BfmI	CTRYAG	1 cut(s)	528
BfuI	GTATCC	1 cut(s)	549
Bme1390I	CCNGG	4 cut(s)	347, 500, 671, 724
Bme18I	GGWCC	3 cut(s)	265, 318, 731
BmgT120I	GGNCC	6 cut(s)	265, 318, 466, 686, 687, 731
BmiI	GGNNCC	8 cut(s)	267, 330, 668, 688, 689, 732, 733, 747
BmrFI	CCNGG	4 cut(s)	347, 500, 671, 724
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	1 cut(s)	158
BmuI	ACTGGG	1 cut(s)	529
BpmI	CTGGAG	2 cut(s)	180, 653
Bpu10I	CCTNAGC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	724
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	4 cut(s)	324, 499, 723, 1122
BsaWI	WCCGGW	2 cut(s)	337, 703
BsaXI	ACNNNNNCTCC	4 cut(s)	313, 343, 1128, 1158
Bsc4I	CCNNNNNNNGG	4 cut(s)	710, 777, 981, 1203
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	535
BseAI	TCCGGA	1 cut(s)	703
BseBI	CCWGG	3 cut(s)	347, 500, 671
BseDI	CCNNGG	4 cut(s)	324, 499, 723, 1122
BseLI	CCNNNNNNNGG	4 cut(s)	710, 777, 981, 1203
BseMII	CTCAG	2 cut(s)	70, 971
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	2 cut(s)	108, 233
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	7 cut(s)	54, 126, 198, 289, 295, 557, 1046
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	2 cut(s)	24, 300
BshFI	GGCC	6 cut(s)	284, 350, 467, 688, 1181, 1196
BsiHKAI	GWGCWC	2 cut(s)	876, 1174
BsiSI	CCGG	5 cut(s)	132, 158, 338, 704, 723
BslFI	GGGAC	3 cut(s)	3, 251, 717
BslI	CCNNNNNNNGG	4 cut(s)	710, 777, 981, 1203
BsmAI	GTCTC	2 cut(s)	37, 515
BsmFI	GGGAC	3 cut(s)	3, 251, 717
BsnI	GGCC	6 cut(s)	284, 350, 467, 688, 1181, 1196
Bsp119I	TTCGAA	1 cut(s)	423
Bsp120I	GGGCCC	1 cut(s)	686
Bsp1286I	GDGCHC	3 cut(s)	690, 876, 1174
Bsp13I	TCCGGA	1 cut(s)	703
Bsp143I	GATC	2 cut(s)	85, 996
BspANI	GGCC	6 cut(s)	284, 350, 467, 688, 1181, 1196
BspCNI	CTCAG	2 cut(s)	69, 970
BspEI	TCCGGA	1 cut(s)	703
BspFNI	CGCG	2 cut(s)	24, 300
BspHI	TCATGA	1 cut(s)	1056
BspLI	GGNNCC	8 cut(s)	267, 330, 668, 688, 689, 732, 733, 747
BspPI	GGATC	2 cut(s)	93, 1004
BspT104I	TTCGAA	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	4 cut(s)	324, 499, 723, 1122
BssMI	GATC	2 cut(s)	85, 996
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	792
Bst2BI	CACGAG	1 cut(s)	792
Bst2UI	CCWGG	3 cut(s)	347, 500, 671
Bst4CI	ACNGT	7 cut(s)	17, 292, 325, 509, 521, 834, 880
BstACI	GRCGYC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	4 cut(s)	56, 554, 957, 1038
BstDSI	CCRYGG	1 cut(s)	324
BstENI	CCTNNNNNAGG	1 cut(s)	979
BstFNI	CGCG	2 cut(s)	24, 300
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	2 cut(s)	88, 999
BstMAI	GTCTC	2 cut(s)	37, 515
BstMBI	GATC	2 cut(s)	85, 996
BstMWI	GCNNNNNNNGC	5 cut(s)	302, 308, 567, 857, 1178
BstNI	CCWGG	3 cut(s)	347, 500, 671
BstSCI	CCNGG	4 cut(s)	345, 498, 669, 722
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	2 cut(s)	24, 300
BstV1I	GCAGC	7 cut(s)	54, 126, 198, 289, 295, 557, 1046
BstXI	CCANNNNNNTGG	1 cut(s)	1192
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	6 cut(s)	284, 350, 467, 688, 1181, 1196
BtgI	CCRYGG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	298
CciI	TCATGA	1 cut(s)	1056
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	6 cut(s)	265, 318, 466, 686, 687, 731
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	623
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	4 cut(s)	56, 554, 957, 1038
DpnI	GATC	2 cut(s)	87, 998
DpnII	GATC	2 cut(s)	85, 996
DraIII	CACNNNGTG	1 cut(s)	557
EaeI	YGGCCR	1 cut(s)	282
EciI	GGCGGA	2 cut(s)	321, 796
Eco24I	GRGCYC	1 cut(s)	690
Eco47I	GGWCC	3 cut(s)	265, 318, 731
EcoNI	CCTNNNNNAGG	1 cut(s)	979
EcoO109I	RGGNCCY	2 cut(s)	687, 731
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	3 cut(s)	345, 498, 669
EcoT22I	ATGCAT	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	690
FaqI	GGGAC	3 cut(s)	3, 251, 717
FauI	CCCGC	3 cut(s)	29, 698, 721
FriOI	GRGCYC	1 cut(s)	690
FspBI	CTAG	1 cut(s)	971
GlaI	GCGC	1 cut(s)	301
GsuI	CTGGAG	2 cut(s)	180, 653
HaeIII	GGCC	6 cut(s)	284, 350, 467, 688, 1181, 1196
HapII	CCGG	5 cut(s)	132, 158, 338, 704, 723
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	129
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HinfI	GANTC	8 cut(s)	50, 163, 169, 232, 590, 764, 784, 1053
HpaII	CCGG	5 cut(s)	132, 158, 338, 704, 723
HphI	GGTGA	3 cut(s)	54, 172, 727
Hpy166II	GTNNAC	2 cut(s)	318, 1084
Hpy188I	TCNGA	5 cut(s)	168, 237, 577, 805, 960
Hpy188III	TCNNGA	3 cut(s)	268, 704, 1057
Hpy8I	GTNNAC	2 cut(s)	318, 1084
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	6 cut(s)	46, 401, 405, 409, 942, 1127
HpyCH4III	ACNGT	7 cut(s)	17, 292, 325, 509, 521, 834, 880
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	7 cut(s)	4, 149, 214, 296, 980, 1034, 1102
HpyF10VI	GCNNNNNNNGC	5 cut(s)	302, 308, 567, 857, 1178
HpyF3I	CTNAG	4 cut(s)	56, 554, 957, 1038
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	129
HspAI	GCGC	1 cut(s)	300
KflI	GGGWCCC	1 cut(s)	731
Kpn2I	TCCGGA	1 cut(s)	703
Kzo9I	GATC	2 cut(s)	85, 996
LmnI	GCTCC	5 cut(s)	334, 567, 656, 672, 751
Lsp1109I	GCAGC	7 cut(s)	54, 126, 198, 289, 295, 557, 1046
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	1 cut(s)	971
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	4 cut(s)	160, 503, 515, 697
MalI	GATC	2 cut(s)	87, 998
MboI	GATC	2 cut(s)	85, 996
MboII	GAAGA	4 cut(s)	242, 490, 496, 1180
MfeI	CAATTG	1 cut(s)	1162
MhlI	GDGCHC	3 cut(s)	690, 876, 1174
MlyI	GAGTC	4 cut(s)	44, 157, 758, 1062
MmeI	TCCRAC	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	151
MroI	TCCGGA	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	2 cut(s)	809, 1074
MslI	CAYNNNNRTG	1 cut(s)	1190
MspA1I	CMGCKG	3 cut(s)	67, 308, 860
MspI	CCGG	5 cut(s)	132, 158, 338, 704, 723
MspR9I	CCNGG	4 cut(s)	347, 500, 671, 724
MunI	CAATTG	1 cut(s)	1162
MvaI	CCWGG	3 cut(s)	347, 500, 671
MvnI	CGCG	2 cut(s)	24, 300
MwoI	GCNNNNNNNGC	5 cut(s)	302, 308, 567, 857, 1178
NciI	CCSGG	1 cut(s)	724
NdeII	GATC	2 cut(s)	85, 996
NlaIV	GGNNCC	8 cut(s)	267, 330, 668, 688, 689, 732, 733, 747
NmuCI	GTSAC	3 cut(s)	160, 515, 697
NsiI	ATGCAT	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	423
PagI	TCATGA	1 cut(s)	1056
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	4 cut(s)	169, 232, 590, 784
PfoI	TCCNGGA	1 cut(s)	669
PleI	GAGTC	4 cut(s)	44, 157, 758, 1061
PpsI	GAGTC	4 cut(s)	44, 157, 758, 1061
PpuMI	RGGWCCY	1 cut(s)	731
Psp5II	RGGWCCY	1 cut(s)	731
Psp6I	CCWGG	3 cut(s)	345, 498, 669
PspGI	CCWGG	3 cut(s)	345, 498, 669
PspN4I	GGNNCC	8 cut(s)	267, 330, 668, 688, 689, 732, 733, 747
PspOMI	GGGCCC	1 cut(s)	686
PspPI	GGNCC	6 cut(s)	265, 318, 466, 686, 687, 731
PspPPI	RGGWCCY	1 cut(s)	731
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
RseI	CAYNNNNRTG	1 cut(s)	1190
SaqAI	TTAA	2 cut(s)	809, 1074
Sau3AI	GATC	2 cut(s)	85, 996
Sau96I	GGNCC	6 cut(s)	265, 318, 466, 686, 687, 731
SchI	GAGTC	4 cut(s)	44, 157, 758, 1062
ScrFI	CCNGG	4 cut(s)	347, 500, 671, 724
SduI	GDGCHC	3 cut(s)	690, 876, 1174
SfaNI	GCATC	1 cut(s)	158
SfcI	CTRYAG	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	423
SinI	GGWCC	3 cut(s)	265, 318, 731
SmiMI	CAYNNNNRTG	1 cut(s)	1190
SspMI	CTAG	1 cut(s)	971
StyD4I	CCNGG	4 cut(s)	345, 498, 669, 722
TaaI	ACNGT	7 cut(s)	17, 292, 325, 509, 521, 834, 880
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	126, 423
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	3 cut(s)	73, 308, 667
TfiI	GAWTC	4 cut(s)	169, 232, 590, 784
Tru1I	TTAA	2 cut(s)	809, 1074
Tru9I	TTAA	2 cut(s)	809, 1074
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	3 cut(s)	160, 515, 697
TseI	GCWGC	7 cut(s)	67, 139, 211, 302, 308, 570, 1034
Tsp45I	GTSAC	3 cut(s)	160, 515, 697
TspDTI	ATGAA	7 cut(s)	420, 497, 582, 789, 1087, 1106, 1180
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	3 cut(s)	265, 318, 731
XagI	CCTNNNNNAGG	1 cut(s)	979
XapI	RAATTY	2 cut(s)	341, 1127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1189
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	1 cut(s)	971
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.