Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000480.1

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Reverse (-)

306178 .. 306967

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000480.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgtctaggcaaagccagcgtttgaatgtggttcctactgttacaatgcttggaattatgaaagctcgtcttgttggtgcgacgagaggtcatgctctcctcaagaagaagagtgatgctctaactgttcagtttcgggccattcttaaaaagattgtgtcaaccaaagaatcaatgggagatattattaaaacctcctccttcgcccttactgaagtcaagtatgttgctggtgagaccaagaacgacctcactggattggccagaggtggacaacaggttcaacggtgcaaagctgcttatgtgaaagcaattgaggttcttgtggagcttgcttcacttcaaacatcaattttagcccttgatgaagcaatcaagagcacaaatcgcagggtcaatgctctggagaatgtggtgaagcctaggttggagaatacaataacttatatcaagggggagtcggatgagctggaaagtgaagacttcttcaggttaaagaagatacagggatttaagaagagggaaattgagagacagatggcagctgctaagaacttctcggacgaccaggctgcagaagttatgtctttcaagaagggtatttcactaaattcagctcaaaatttgttgtctggaggtatgggaaaggacgaggatatcattttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

222

Amino Acids

24.53

Weight (kDa)

9.66

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	610, 622
AcuI	CTGAAG	2 cut(s)	234, 472
AgsI	TTSAA	4 cut(s)	25, 284, 344, 592
AhdI	GACNNNNNGTC	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	567
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	6 cut(s)	65, 296, 331, 469, 545, 617
AluI	AGCT	6 cut(s)	65, 296, 331, 469, 545, 617
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	2 cut(s)	230, 526
AoxI	GGCC	2 cut(s)	138, 261
ApeKI	GCWGC	4 cut(s)	296, 542, 545, 572
ApoI	RAATTY	2 cut(s)	610, 622
AspA2I	CCTAGG	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	245, 427
AvrII	CCTAGG	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	4 cut(s)	283, 532, 554, 559
BccI	CCATC	1 cut(s)	532
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	1 cut(s)	569
BcoDI	GTCTC	2 cut(s)	230, 526
BfaI	CTAG	2 cut(s)	6, 423
BfmI	CTRYAG	1 cut(s)	573
BisI	GCNGC	4 cut(s)	297, 543, 546, 573
BlnI	CCTAGG	1 cut(s)	422
BlsI	GCNGC	4 cut(s)	298, 544, 547, 574
Bme1390I	CCNGG	1 cut(s)	569
BmeRI	GACNNNNNGTC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	486
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	2 cut(s)	425, 654
BpuEI	CTTGAG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	469
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	2 cut(s)	89, 187
BseXI	GCAGC	4 cut(s)	283, 532, 554, 559
BshFI	GGCC	2 cut(s)	140, 263
BsiHKAI	GWGCWC	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	230, 526
BsnI	GGCC	2 cut(s)	140, 263
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	383
BspANI	GGCC	2 cut(s)	140, 263
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	422
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	3 cut(s)	40, 127, 288
Bst6I	CTCTTC	2 cut(s)	104, 512
BstC8I	GCNNGC	2 cut(s)	17, 333
BstDEI	CTNAG	1 cut(s)	549
BstF5I	GGATG	1 cut(s)	469
BstMAI	GTCTC	2 cut(s)	230, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 387
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	573
BstV1I	GCAGC	4 cut(s)	283, 532, 554, 559
BstV2I	GAAGAC	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	140, 263
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	17, 333
Cfr13I	GGNCC	1 cut(s)	138
CviAII	CATG	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	549
DriI	GACNNNNNGTC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	104, 512
Eam1105I	GACNNNNNGTC	1 cut(s)	87
EarI	CTCTTC	2 cut(s)	104, 512
Eco130I	CCWWGG	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	658
Eco57I	CTGAAG	2 cut(s)	234, 472
EcoRII	CCWGG	1 cut(s)	567
EcoRV	GATATC	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	1 cut(s)	95
FaiI	YATR	7 cut(s)	59, 93, 225, 303, 447, 584, 641
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	297, 543, 546, 573
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	4 cut(s)	297, 543, 546, 573
FspBI	CTAG	2 cut(s)	6, 423
GluI	GCNGC	4 cut(s)	297, 543, 546, 573
GsuI	CTGGAG	2 cut(s)	425, 654
HaeIII	GGCC	2 cut(s)	140, 263
Hin1II	CATG	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	170, 458
HphI	GGTGA	2 cut(s)	245, 427
Hpy166II	GTNNAC	2 cut(s)	162, 272
Hpy188I	TCNGA	3 cut(s)	463, 562, 668
Hpy188III	TCNNGA	5 cut(s)	103, 376, 404, 592, 633
Hpy8I	GTNNAC	2 cut(s)	162, 272
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	211, 589
HpyCH4III	ACNGT	3 cut(s)	40, 127, 288
HpyCH4V	TGCA	2 cut(s)	291, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 387
HpyF3I	CTNAG	1 cut(s)	549
Hsp92II	CATG	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	4 cut(s)	283, 532, 554, 559
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	6, 423
MaeIII	GTNAC	1 cut(s)	40
MboII	GAAGA	6 cut(s)	118, 121, 478, 491, 511, 529
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	383
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	6 cut(s)	54, 312, 351, 525, 610, 622
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	408, 441
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	4 cut(s)	147, 189, 494, 513
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	569
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	2 cut(s)	16, 387
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	298, 544, 547, 574
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	545
SaqAI	TTAA	4 cut(s)	147, 189, 494, 513
SatI	GCNGC	4 cut(s)	297, 543, 546, 573
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	383
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	6 cut(s)	54, 312, 351, 525, 610, 622
SspMI	CTAG	2 cut(s)	6, 423
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	3 cut(s)	40, 127, 288
TasI	AATT	6 cut(s)	54, 312, 351, 525, 610, 622
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	4 cut(s)	147, 189, 494, 513
Tru9I	TTAA	4 cut(s)	147, 189, 494, 513
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	4 cut(s)	296, 542, 545, 572
TspDTI	ATGAA	2 cut(s)	74, 381
TspRI	CASTG	1 cut(s)	259
XapI	RAATTY	2 cut(s)	610, 622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmaJI	CCTAGG	1 cut(s)	422
XspI	CTAG	2 cut(s)	6, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.