Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002082.1

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Forward (+)

60375 .. 61332

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002082.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgacgagtgcgaagagggaggcgccaatgggagcgaagagggtgaaggaggcacggattgcaaattctaggctcccaaaatttgaatactttactgaaggtgagaccaagaacgacctcactggattggccagaggtggacaacaggttcaactgtgcaaggctgcttatgtgaaagcaattgaggttcttgtggagcttgcttcacttcaaacatcatttttaacccttgatgaagctatcaatagcacaaatcgcaaggtcaatgctctggagaatgtggtgaagcctaggttggagaatacaataacttatatcaagggggagttggatgagctggaaagggaggacttcttcaggttaaagaagatacagggatttaagaagagggaaattgagaaacagatggcagctggcaagaacttctcggacaaccaggctgcagaagttatttctttaaagaagggtatttcactaaattcagttcaaaatttgttgtctggaggtgtgggaaaggacgaggatatcattttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

178

Amino Acids

19.85

Weight (kDa)

9.1

Isoelectric Point (pI)

20.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	4 cut(s)	64, 80, 478, 490
AcuI	CTGAAG	2 cut(s)	117, 340
AcyI	GRCGYC	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	86, 152, 212, 488
AjnI	CCWGG	1 cut(s)	435
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AloI	GAACNNNNNNTCC	2 cut(s)	132, 164
AluBI	AGCT	4 cut(s)	199, 239, 337, 413
AluI	AGCT	4 cut(s)	199, 239, 337, 413
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	3 cut(s)	164, 410, 440
ApoI	RAATTY	4 cut(s)	64, 80, 478, 490
AspA2I	CCTAGG	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	25
AsuHPI	GGTGA	3 cut(s)	55, 113, 295
AvrII	CCTAGG	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	22
BbvI	GCAGC	3 cut(s)	151, 422, 427
BccI	CCATC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	69, 291
BfmI	CTRYAG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	3 cut(s)	165, 411, 441
BlnI	CCTAGG	1 cut(s)	290
BlsI	GCNGC	3 cut(s)	166, 412, 442
Bme1390I	CCNGG	1 cut(s)	437
BmiI	GGNNCC	2 cut(s)	24, 74
BmrFI	CCNGG	1 cut(s)	437
BpmI	CTGGAG	2 cut(s)	293, 522
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	151, 422, 427
BshFI	GGCC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	24, 74
BspMAI	CTGCAG	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	290
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	3 cut(s)	8, 32, 380
BstACI	GRCGYC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	201, 415
BstF5I	GGATG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 255
BstNI	CCWGG	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	435
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	3 cut(s)	151, 422, 427
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	201, 415
CfoI	GCGC	1 cut(s)	25
CviJI	RGCY	9 cut(s)	73, 131, 164, 199, 239, 289, 337, 413, 440
CviKI_1	RGCY	9 cut(s)	73, 131, 164, 199, 239, 289, 337, 413, 440
DinI	GGCGCC	1 cut(s)	24
DraI	TTTAAA	1 cut(s)	459
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	3 cut(s)	8, 32, 380
EarI	CTCTTC	3 cut(s)	8, 32, 380
Eco130I	CCWWGG	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	526
Eco57I	CTGAAG	2 cut(s)	117, 340
EcoRII	CCWGG	1 cut(s)	435
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	290
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	290
FaiI	YATR	2 cut(s)	171, 315
Fnu4HI	GCNGC	3 cut(s)	165, 411, 441
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	165, 411, 441
FspBI	CTAG	2 cut(s)	69, 291
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	165, 411, 441
GsuI	CTGGAG	2 cut(s)	293, 522
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HphI	GGTGA	3 cut(s)	55, 113, 295
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	2 cut(s)	272, 501
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	40, 92, 457
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	62, 159, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 255
Hsp92I	GRCGYC	1 cut(s)	23
HspAI	GCGC	1 cut(s)	23
KasI	GGCGCC	1 cut(s)	22
LmnI	GCTCC	3 cut(s)	32, 78, 196
Lsp1109I	GCAGC	3 cut(s)	151, 422, 427
MaeI	CTAG	2 cut(s)	69, 291
MboII	GAAGA	5 cut(s)	25, 49, 346, 379, 397
MfeI	CAATTG	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	6 cut(s)	64, 80, 180, 393, 478, 490
MluNI	TGGCCA	1 cut(s)	131
Mly113I	GGCGCC	1 cut(s)	23
MmeI	TCCRAC	2 cut(s)	276, 309
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	4 cut(s)	224, 362, 381, 458
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	437
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	59, 255
NarI	GGCGCC	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	24, 74
PkrI	GCNGC	3 cut(s)	166, 412, 442
PluTI	GGCGCC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	2 cut(s)	24, 74
PstI	CTGCAG	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	413
SaqAI	TTAA	4 cut(s)	224, 362, 381, 458
SatI	GCNGC	3 cut(s)	165, 411, 441
ScrFI	CCNGG	1 cut(s)	437
SfcI	CTRYAG	1 cut(s)	441
SfoI	GGCGCC	1 cut(s)	24
Sse9I	AATT	6 cut(s)	64, 80, 180, 393, 478, 490
SspDI	GGCGCC	1 cut(s)	22
SspMI	CTAG	2 cut(s)	69, 291
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	156
TasI	AATT	6 cut(s)	64, 80, 180, 393, 478, 490
Tru1I	TTAA	4 cut(s)	224, 362, 381, 458
Tru9I	TTAA	4 cut(s)	224, 362, 381, 458
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	3 cut(s)	164, 410, 440
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	4 cut(s)	64, 80, 478, 490
XmaJI	CCTAGG	1 cut(s)	290
XspI	CTAG	2 cut(s)	69, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.