Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Forward (+)

18845679 .. 18847926

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G169600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCCGGCCAAAGCCAGCGCTTGACTGTAGTTCCTACAGTTACAATGCTTGGAGTTATGAAAGCTCGCCTTGTGGGTGCGACAAGAGGTCATGCTCTGCTCAAGAAGAAGAGTGATGCTTTAACTGTGCAGTTTCGTCAGATTCTTAAAAATATTGTCTCAACCAAAGAATCCATGGGAGATGTTATGAAAAACTCATCCTTTGCCCTTACTGAAGCCAAGTATGTAGCTGGTGAGAACATCAAGCACATTGTTCTTGAGAATGTCCAAAATGCCTCTATTAAAGTTCGATCAAAGCAAGAGAATGTTGCTGGTGTAAAGCTCCCAAAGTTCGAATATTTTACTGAAGGTGAGACTAAGAATGATCTCACTGGATTGGCCAGAGGTGGACAACAGGTCCAACTCTGTCGTGCTGCCTATGTGAAAGCAATTGAGGTTCTTGTGGAGCTTGCTTCACTTCAAACATCATTTTTAACCCTTGATGAAGCAATCAAGACCACAAATCGTCGTGTCAATGCTCTAGAGAATGTTGTGAAGCCTAGGTTGGAAAATACAATAAGTTATATCAAGGGGGAGTTGGATGAACTGGAAAGGGAGGATTTTTTCAGGTTAAAGAAGATACAGGGTTATAAGAAGAGGGAGATTGAAAGACAGATGGCATCTGCCAAGCAATTTGCCGATGATCAGGTTGCAGAAAAGTTATCTTTGAAGAAGGGCGTTTCCTTAAATTCAGCTCAGAACATGTTGTCAGCGGGTATGGAAAAGGATGATGATATCATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

262

Amino Acids

29.13

Weight (kDa)

9.46

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AciI	CCGC	1 cut(s)	752
AcoI	YGGCCR	2 cut(s)	7, 378
AcsI	RAATTY	1 cut(s)	727
AcuI	CTGAAG	2 cut(s)	234, 366
AfeI	AGCGCT	1 cut(s)	20
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	3 cut(s)	461, 647, 709
AhdI	GACNNNNNGTC	2 cut(s)	87, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	5 cut(s)	65, 230, 322, 448, 734
AluI	AGCT	5 cut(s)	65, 230, 322, 448, 734
Alw26I	GTCTC	2 cut(s)	163, 347
Aor51HI	AGCGCT	1 cut(s)	20
AoxI	GGCC	2 cut(s)	7, 378
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	1 cut(s)	727
AspA2I	CCTAGG	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	245, 362
AsuII	TTCGAA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	397
AvrII	CCTAGG	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	2 cut(s)	163, 347
BfaI	CTAG	2 cut(s)	521, 540
BfmI	CTRYAG	2 cut(s)	27, 36
BfoI	RGCGCY	1 cut(s)	22
BisI	GCNGC	1 cut(s)	414
BlnI	CCTAGG	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	415
Bme18I	GGWCC	1 cut(s)	397
BmeRI	GACNNNNNGTC	2 cut(s)	87, 395
BmgT120I	GGNCC	1 cut(s)	397
BmsI	GCATC	2 cut(s)	106, 668
Bpu14I	TTCGAA	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	86, 278
BsaJI	CCNNGG	2 cut(s)	174, 539
Bse1I	ACTGG	2 cut(s)	376, 591
BseDI	CCNNGG	2 cut(s)	174, 539
BseGI	GGATG	3 cut(s)	197, 586, 772
BseMII	CTCAG	1 cut(s)	749
BseNI	ACTGG	2 cut(s)	376, 591
BseXI	GCAGC	1 cut(s)	400
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	2 cut(s)	9, 380
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	2 cut(s)	163, 347
BsnI	GGCC	2 cut(s)	9, 380
Bsp119I	TTCGAA	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	290, 364, 682
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	1 cut(s)	752
BspANI	GGCC	2 cut(s)	9, 380
BspCNI	CTCAG	1 cut(s)	748
BspT104I	TTCGAA	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	376, 591
BssECI	CCNNGG	2 cut(s)	174, 539
BssMI	GATC	3 cut(s)	290, 364, 682
BssT1I	CCWWGG	2 cut(s)	174, 539
Bst4CI	ACNGT	3 cut(s)	28, 40, 127
Bst6I	CTCTTC	2 cut(s)	104, 629
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	17, 67, 450
BstDEI	CTNAG	2 cut(s)	357, 735
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	197, 586, 772
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	3 cut(s)	293, 367, 685
BstMAI	GTCTC	2 cut(s)	163, 347
BstMBI	GATC	3 cut(s)	290, 364, 682
BstNSI	RCATGY	1 cut(s)	745
BstSFI	CTRYAG	2 cut(s)	27, 36
BstV1I	GCAGC	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	9, 380
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	197, 586, 772
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	17, 67, 450
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	397
CviAII	CATG	3 cut(s)	92, 175, 742
DdeI	CTNAG	2 cut(s)	357, 735
DpnI	GATC	3 cut(s)	292, 366, 684
DpnII	GATC	3 cut(s)	290, 364, 682
DriI	GACNNNNNGTC	2 cut(s)	87, 395
EaeI	YGGCCR	2 cut(s)	7, 378
Eam1104I	CTCTTC	2 cut(s)	104, 629
Eam1105I	GACNNNNNGTC	2 cut(s)	87, 395
EarI	CTCTTC	2 cut(s)	104, 629
Eco130I	CCWWGG	2 cut(s)	174, 539
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	397
Eco47III	AGCGCT	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	234, 366
EcoRV	GATATC	1 cut(s)	775
EcoT14I	CCWWGG	2 cut(s)	174, 539
ErhI	CCWWGG	2 cut(s)	174, 539
FaeI	CATG	3 cut(s)	95, 178, 745
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	3 cut(s)	91, 174, 741
FauI	CCCGC	1 cut(s)	745
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	3 cut(s)	184, 593, 779
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	521, 540
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	9, 380
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	95, 178, 745
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	142, 170
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	245, 362
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	3 cut(s)	141, 738, 785
Hpy188III	TCNNGA	4 cut(s)	103, 257, 493, 521
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	341, 706
HpyCH4III	ACNGT	3 cut(s)	28, 40, 127
HpyCH4V	TGCA	2 cut(s)	130, 692
HpyF3I	CTNAG	2 cut(s)	357, 735
Hsp92II	CATG	3 cut(s)	95, 178, 745
HspAI	GCGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	3 cut(s)	290, 364, 682
LmnI	GCTCC	2 cut(s)	327, 445
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	2 cut(s)	106, 668
MaeI	CTAG	2 cut(s)	521, 540
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	292, 366, 684
MboI	GATC	3 cut(s)	290, 364, 682
MboII	GAAGA	5 cut(s)	118, 121, 628, 646, 721
MfeI	CAATTG	1 cut(s)	429
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	3 cut(s)	429, 671, 727
MluNI	TGGCCA	1 cut(s)	380
MmeI	TCCRAC	3 cut(s)	424, 525, 558
MnlI	CCTC	6 cut(s)	80, 286, 377, 427, 589, 630
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	6 cut(s)	122, 147, 282, 473, 611, 725
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	429
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	290, 364, 682
NlaIII	CATG	3 cut(s)	95, 178, 745
NspI	RCATGY	1 cut(s)	745
NspV	TTCGAA	1 cut(s)	333
PciI	ACATGT	1 cut(s)	741
PfeI	GAWTC	2 cut(s)	142, 170
PkrI	GCNGC	1 cut(s)	415
PscI	ACATGT	1 cut(s)	741
PsiI	TTATAA	1 cut(s)	630
PspPI	GGNCC	1 cut(s)	397
SaqAI	TTAA	6 cut(s)	122, 147, 282, 473, 611, 725
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	3 cut(s)	290, 364, 682
Sau96I	GGNCC	1 cut(s)	397
SfaNI	GCATC	2 cut(s)	106, 668
SfcI	CTRYAG	2 cut(s)	27, 36
SfuI	TTCGAA	1 cut(s)	333
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	101, 257
SmoI	CTYRAG	2 cut(s)	101, 257
Sse9I	AATT	3 cut(s)	429, 671, 727
SsiI	CCGC	1 cut(s)	752
SspI	AATATT	2 cut(s)	154, 338
SspMI	CTAG	2 cut(s)	521, 540
StyI	CCWWGG	2 cut(s)	174, 539
TaaI	ACNGT	3 cut(s)	28, 40, 127
TaqI	TCGA	2 cut(s)	289, 333
TasI	AATT	3 cut(s)	429, 671, 727
TfiI	GAWTC	2 cut(s)	142, 170
Tru1I	TTAA	6 cut(s)	122, 147, 282, 473, 611, 725
Tru9I	TTAA	6 cut(s)	122, 147, 282, 473, 611, 725
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	4 cut(s)	74, 203, 498, 597
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	727
XbaI	TCTAGA	1 cut(s)	520
XceI	RCATGY	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmaJI	CCTAGG	1 cut(s)	539
XspI	CTAG	2 cut(s)	521, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.