Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003127.1

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Reverse (-)

22493 .. 23287

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003127.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgtcttggcaaagccagcgtttgaatgtggttcctactgttacaatgcttggaattatgaaagctcgtcttgttggtgctactagaggtcatgctctcctcaagaagaagagtgatgctctaactgttcagtttcgtgcaattcttaaaaagattgtgtcaaccaaagagtcaatgggagatattatgaaaacctcctccttcgcccttactgaagccaagtatgttgctggtgagaacatcaaacacattgttctcgagaatgtcaacactgcctctcttaaagttcgatcaaagcaagagaatgttgctagtgtaaagctcccaaaatttgaatactttaatgaaggtgagaccaagaacgacctcactggattggccagaggtggacaacaggttcaactgtgcaaggctgcttatgtgaaagcaattgaggttcttgtggagcttgcttcacttcaaagtcttcaaacatcatttttaacccttgatgaagcaatcaagagcacaaatcgcagggtcaatgctctggagaatgtggtgaagcctaggttggagaatacaataacttatatcaagggggagttggatgagctggaaagggaggacttcttcaggttaaagaagatacagggatttaagaagagggaaattgagagacagatggcagctgctaagaacttctcggacgaccaggctgcagaagttatttctttaaagaagggtatttctctaaattcagctcaaaatttgttgtctggaggtatgggaaaggacgaggatatcattttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

264

Amino Acids

29.4

Weight (kDa)

9.54

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	3 cut(s)	329, 736, 748
AcuI	CTGAAG	2 cut(s)	234, 598
AgsI	TTSAA	5 cut(s)	25, 335, 401, 461, 470
AjnI	CCWGG	1 cut(s)	693
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	6 cut(s)	65, 322, 448, 595, 671, 743
AluI	AGCT	6 cut(s)	65, 322, 448, 595, 671, 743
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	2 cut(s)	347, 652
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	4 cut(s)	413, 668, 671, 698
ApoI	RAATTY	3 cut(s)	329, 736, 748
AspA2I	CCTAGG	1 cut(s)	548
AsuHPI	GGTGA	3 cut(s)	245, 362, 553
AvaI	CYCGRG	1 cut(s)	257
AvrII	CCTAGG	1 cut(s)	548
BalI	TGGCCA	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	4 cut(s)	400, 658, 680, 685
BccI	CCATC	1 cut(s)	658
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BciT130I	CCWGG	1 cut(s)	695
BcoDI	GTCTC	2 cut(s)	347, 652
BfaI	CTAG	3 cut(s)	84, 312, 549
BfmI	CTRYAG	1 cut(s)	699
BisI	GCNGC	4 cut(s)	414, 669, 672, 699
BlnI	CCTAGG	1 cut(s)	548
BlsI	GCNGC	4 cut(s)	415, 670, 673, 700
Bme1390I	CCNGG	1 cut(s)	695
BmeT110I	CYCGRG	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	695
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	2 cut(s)	551, 780
BpuEI	CTTGAG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	548
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	1 cut(s)	595
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	2 cut(s)	89, 187
BseXI	GCAGC	4 cut(s)	400, 658, 680, 685
BshFI	GGCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	509
BsiHKCI	CYCGRG	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	347, 652
BsnI	GGCC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	703
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	548
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	40, 127, 405
Bst6I	CTCTTC	2 cut(s)	104, 638
BstC8I	GCNNGC	2 cut(s)	17, 450
BstDEI	CTNAG	1 cut(s)	675
BstF5I	GGATG	1 cut(s)	595
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	2 cut(s)	347, 652
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 513
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	693
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	4 cut(s)	400, 658, 680, 685
BstV2I	GAAGAC	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	270, 369
Cac8I	GCNNGC	2 cut(s)	17, 450
CviAII	CATG	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	675
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
DraI	TTTAAA	1 cut(s)	717
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	104, 638
EarI	CTCTTC	2 cut(s)	104, 638
Eco130I	CCWWGG	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	784
Eco57I	CTGAAG	2 cut(s)	234, 598
Eco88I	CYCGRG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	693
EcoRV	GATATC	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	548
ErhI	CCWWGG	1 cut(s)	548
FaeI	CATG	1 cut(s)	95
FaiI	YATR	7 cut(s)	59, 93, 188, 225, 420, 573, 767
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	414, 669, 672, 699
FokI	GGATG	1 cut(s)	602
Fsp4HI	GCNGC	4 cut(s)	414, 669, 672, 699
FspBI	CTAG	3 cut(s)	84, 312, 549
GluI	GCNGC	4 cut(s)	414, 669, 672, 699
GsuI	CTGGAG	2 cut(s)	551, 780
HaeIII	GGCC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	95
HincII	GTYRAC	2 cut(s)	162, 268
HindII	GTYRAC	2 cut(s)	162, 268
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	3 cut(s)	245, 362, 553
Hpy166II	GTNNAC	3 cut(s)	162, 268, 389
Hpy188I	TCNGA	1 cut(s)	688
Hpy188III	TCNNGA	6 cut(s)	103, 257, 259, 502, 530, 759
Hpy8I	GTNNAC	3 cut(s)	162, 268, 389
HpyAV	CCTTC	3 cut(s)	211, 341, 715
HpyCH4III	ACNGT	3 cut(s)	40, 127, 405
HpyCH4V	TGCA	3 cut(s)	140, 408, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 513
HpyF3I	CTNAG	1 cut(s)	675
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	327, 445
Lsp1109I	GCAGC	4 cut(s)	400, 658, 680, 685
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	3 cut(s)	84, 312, 549
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	6 cut(s)	118, 121, 458, 604, 637, 655
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	509
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	7 cut(s)	54, 141, 329, 429, 651, 736, 748
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	534, 567
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	7 cut(s)	147, 282, 342, 482, 620, 639, 716
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	695
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	16, 513
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	257
PkrI	GCNGC	4 cut(s)	415, 670, 673, 700
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	671
SaqAI	TTAA	7 cut(s)	147, 282, 342, 482, 620, 639, 716
SatI	GCNGC	4 cut(s)	414, 669, 672, 699
Sau3AI	GATC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	1 cut(s)	509
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	699
Sfr274I	CTCGAG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	101, 257
SmoI	CTYRAG	2 cut(s)	101, 257
Sse9I	AATT	7 cut(s)	54, 141, 329, 429, 651, 736, 748
SspMI	CTAG	3 cut(s)	84, 312, 549
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	548
TaaI	ACNGT	3 cut(s)	40, 127, 405
TaqI	TCGA	2 cut(s)	258, 289
TasI	AATT	7 cut(s)	54, 141, 329, 429, 651, 736, 748
Tru1I	TTAA	7 cut(s)	147, 282, 342, 482, 620, 639, 716
Tru9I	TTAA	7 cut(s)	147, 282, 342, 482, 620, 639, 716
TscAI	CASTG	2 cut(s)	277, 376
TseI	GCWGC	4 cut(s)	413, 668, 671, 698
TspDTI	ATGAA	4 cut(s)	74, 203, 360, 507
TspRI	CASTG	2 cut(s)	277, 376
XapI	RAATTY	3 cut(s)	329, 736, 748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	257
XmaJI	CCTAGG	1 cut(s)	548
XspI	CTAG	3 cut(s)	84, 312, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.