RLG00000020504

V-type proton ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005434
Physical Location & Seq
Reverse (-)
65719312 .. 65728134
8823 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020504

Sequence Viewer

Length: 684 bp
ATGAAAGTTCGTCCTGTTGGTGCGATGAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTCTAACTGTGCAGTTTCGTACGATTCTTAAAAAGATTGTGTCAACCAAAGAATCAATGGGAGATATTATGAAAACCTACTCCTTCGCCCTTACTGAAGCCAAGTATGTTGCTGGTGAGAACATCAAACACATTGTTCTTGAGAATGTCAACACTGCCTCTCTTAAAGTTCGATCAAAGCAAGAGAATGTTGCTGGTGTAAAGCTCCCAAAATTTGAATGCTTTACTGAGGGTGAGACCAAGAACGACTTCACTGGATTGGCCAGAGGTGGACAACAAGTTCAACTGTGCAAGGCTGCTTATGTGAAAGCAATTGAGGTTCTTGTGGAGCTTGCTTCACTTCAAACATCATTTTTAACCCTTGATGAAGCAATCAAGAGCCCAAATCGCAGGGTCAATGCTCTGGAGAATGTGGTGAAGCCTAGGTTGGAGAATACAATAACTTATATCAAGGGGGAGTTGGATGAGCTGGAAAGGGAGGACTTCTTCAGGTTCAAGAAGATACAGGGATTTAAGAATAGGGAAATTGAGAGACAGATGGCAGCTGCTAAGAACTTCTCAGACGACCAGGCTGCAGAAGTTATGTCTTTAAAGAAGGTAAACTTCATCAGTGCGAGGCTTTGA

Protein Analysis

228

Amino Acids

25.58

Weight (kDa)

9.59

Isoelectric Point (pI)

26.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_D PF01813 2 - 189 1.4e-63 ATP synthase subunit D
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 2 cut(s) 177, 532
AfaI GTAC 1 cut(s) 82
AgsI TTSAA 4 cut(s) 278, 344, 404, 556
AjnI CCWGG 1 cut(s) 627
AjuI GAANNNNNNNTTGG 4 cut(s) 293, 325, 470, 502
AloI GAACNNNNNNTCC 2 cut(s) 324, 356
AluBI AGCT 4 cut(s) 265, 391, 529, 605
AluI AGCT 4 cut(s) 265, 391, 529, 605
Alw26I GTCTC 2 cut(s) 290, 586
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 4 cut(s) 356, 602, 605, 632
ApoI RAATTY 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 308
AspA2I CCTAGG 1 cut(s) 482
AsuHPI GGTGA 3 cut(s) 188, 305, 487
AvrII CCTAGG 1 cut(s) 482
BalI TGGCCA 1 cut(s) 323
BanII GRGCYC 1 cut(s) 443
BbvI GCAGC 4 cut(s) 343, 592, 614, 619
BccI CCATC 1 cut(s) 592
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 1 cut(s) 629
BcoDI GTCTC 2 cut(s) 290, 586
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 633
BisI GCNGC 4 cut(s) 357, 603, 606, 633
BlnI CCTAGG 1 cut(s) 482
BlsI GCNGC 4 cut(s) 358, 604, 607, 634
Bme1390I CCNGG 1 cut(s) 629
BmrFI CCNGG 1 cut(s) 629
BmsI GCATC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 485
BpuEI CTTGAG 2 cut(s) 29, 221
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 319
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 279, 633
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 4 cut(s) 343, 592, 614, 619
BsgI GTGCAG 1 cut(s) 92
BshFI GGCC 1 cut(s) 323
BsiWI CGTACG 1 cut(s) 80
BsmAI GTCTC 2 cut(s) 290, 586
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 1 cut(s) 323
Bso31I GGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 1 cut(s) 233
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 2 cut(s) 280, 632
BspMAI CTGCAG 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 2 cut(s) 70, 348
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 3 cut(s) 288, 609, 619
BstF5I GGATG 1 cut(s) 529
BstKTI GATC 1 cut(s) 236
BstMAI GTCTC 2 cut(s) 290, 586
BstMBI GATC 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 447
BstNI CCWGG 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 627
BstSFI CTRYAG 1 cut(s) 633
BstV1I GCAGC 4 cut(s) 343, 592, 614, 619
BsuRI GGCC 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 3 cut(s) 213, 312, 676
Cac8I GCNNGC 1 cut(s) 393
Csp6I GTAC 1 cut(s) 81
CviAII CATG 1 cut(s) 35
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 3 cut(s) 288, 609, 619
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
DraI TTTAAA 1 cut(s) 651
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 443
Eco31I GGTCTC 1 cut(s) 290
Eco57I CTGAAG 2 cut(s) 177, 532
EcoRII CCWGG 1 cut(s) 627
EcoT14I CCWWGG 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 1 cut(s) 38
FaiI YATR 6 cut(s) 36, 131, 168, 363, 507, 644
FalI AAGNNNNNCTT 4 cut(s) 293, 325, 647, 679
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 4 cut(s) 357, 603, 606, 633
FokI GGATG 1 cut(s) 536
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 4 cut(s) 357, 603, 606, 633
FspBI CTAG 1 cut(s) 483
GluI GCNGC 4 cut(s) 357, 603, 606, 633
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 1 cut(s) 323
Hin1II CATG 1 cut(s) 38
HincII GTYRAC 2 cut(s) 105, 211
HindII GTYRAC 2 cut(s) 105, 211
HinfI GANTC 2 cut(s) 85, 113
HphI GGTGA 3 cut(s) 188, 305, 487
Hpy166II GTNNAC 4 cut(s) 105, 211, 332, 661
Hpy188I TCNGA 1 cut(s) 622
Hpy188III TCNNGA 5 cut(s) 46, 200, 436, 464, 556
Hpy8I GTNNAC 4 cut(s) 105, 211, 332, 661
HpyAV CCTTC 2 cut(s) 154, 649
HpyCH4III ACNGT 2 cut(s) 70, 348
HpyCH4V TGCA 3 cut(s) 73, 351, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 447
HpyF3I CTNAG 3 cut(s) 288, 609, 619
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 1 cut(s) 233
LmnI GCTCC 2 cut(s) 270, 388
Lsp1109I GCAGC 4 cut(s) 343, 592, 614, 619
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 483
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MboII GAAGA 4 cut(s) 61, 64, 538, 571
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 443
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 3 cut(s) 272, 372, 585
MluNI TGGCCA 1 cut(s) 323
MmeI TCCRAC 2 cut(s) 468, 501
MnlI CCTC 8 cut(s) 23, 53, 229, 283, 320, 370, 532, 669
Mox20I TGGCCA 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 323
MseI TTAA 5 cut(s) 90, 225, 416, 573, 650
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 605
MspR9I CCNGG 1 cut(s) 629
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 629
MwoI GCNNNNNNNGC 1 cut(s) 447
NdeII GATC 1 cut(s) 233
NlaIII CATG 1 cut(s) 38
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 85, 113
Pfl23II CGTACG 1 cut(s) 80
PkrI GCNGC 4 cut(s) 358, 604, 607, 634
Psp6I CCWGG 1 cut(s) 627
PspGI CCWGG 1 cut(s) 627
PspLI CGTACG 1 cut(s) 80
PstI CTGCAG 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SaqAI TTAA 5 cut(s) 90, 225, 416, 573, 650
SatI GCNGC 4 cut(s) 357, 603, 606, 633
Sau3AI GATC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 629
SduI GDGCHC 1 cut(s) 443
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 633
SmlI CTYRAG 2 cut(s) 44, 200
SmoI CTYRAG 2 cut(s) 44, 200
Sse9I AATT 3 cut(s) 272, 372, 585
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 627
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 70, 348
TaqI TCGA 1 cut(s) 232
TasI AATT 3 cut(s) 272, 372, 585
TfiI GAWTC 2 cut(s) 85, 113
Tru1I TTAA 5 cut(s) 90, 225, 416, 573, 650
Tru9I TTAA 5 cut(s) 90, 225, 416, 573, 650
TscAI CASTG 3 cut(s) 220, 319, 676
TseI GCWGC 4 cut(s) 356, 602, 605, 632
TspDTI ATGAA 4 cut(s) 17, 146, 441, 655
TspRI CASTG 3 cut(s) 220, 319, 676
XapI RAATTY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmaJI CCTAGG 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.