Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Reverse (-)

72578232 .. 72578835

Gene Structure 604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG503500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAAACCTCCTCCTTCGCCCTTACTGAAGCCAAGTATGTTGCTGGTGAGAACATCAAACACATTGTTCTCGAGAATGTCAACACTGCCTCTCTTAAAGTTCGATCAAAGCAAGAGAATGTTGCTGGTGTAAAGCTCCCAAAATTTGAATACTTTACTGAAGAGCTTGCTTCACTTCAAACATCATTTTTAACCCTTGATGAAGCTATCAAGAGCACAAATCGCAGGGTCAATGCTCTGGAGAATGTGGTGAAGCCTAGGTTCGAGAATACAATAACTTATATCAAGGGGGAGTTGGATGAGCTGGAAAGGGAGGACTTCTTCAGGTTAAAGAAGTTACAGGGATTTAAGAAGAGGGAAATTGAGAGACAGATGGCAGCTGCTAAGAACTTCTCGGACGACCAGGCTGCAGAAGTTATGTCTTTAAAGAAGGGTATTTCACTAAATTCAGCTCAAAATTTGTTGTCTGGATGTATGGGAAAGGACGAGGATATCATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

167

Amino Acids

18.93

Weight (kDa)

7.76

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_D	PF01813	1 - 51	4.6e-08	ATP synthase subunit D
ATP-synt_D	PF01813	55 - 114	7.3e-27	ATP synthase subunit D

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	143, 445, 457
AcuI	CTGAAG	3 cut(s)	48, 180, 307
AgsI	TTSAA	2 cut(s)	149, 179
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	6 cut(s)	136, 166, 206, 304, 380, 452
AluI	AGCT	6 cut(s)	136, 166, 206, 304, 380, 452
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	71
ApeKI	GCWGC	3 cut(s)	377, 380, 407
ApoI	RAATTY	3 cut(s)	143, 445, 457
AspA2I	CCTAGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	59, 262
AvaI	CYCGRG	1 cut(s)	71
AvrII	CCTAGG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	367, 389, 394
BccI	CCATC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	3 cut(s)	378, 381, 408
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	3 cut(s)	379, 382, 409
Bme1390I	CCNGG	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	304, 476
BseXI	GCAGC	3 cut(s)	367, 389, 394
BsiHKAI	GWGCWC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	361
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	404
Bst6I	CTCTTC	2 cut(s)	156, 347
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	304, 476
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	3 cut(s)	367, 389, 394
BtsCI	GGATG	2 cut(s)	304, 476
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	168
CviJI	RGCY	9 cut(s)	32, 136, 166, 206, 256, 304, 380, 407, 452
CviKI_1	RGCY	9 cut(s)	32, 136, 166, 206, 256, 304, 380, 407, 452
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
DraI	TTTAAA	1 cut(s)	426
Eam1104I	CTCTTC	2 cut(s)	156, 347
EarI	CTCTTC	2 cut(s)	156, 347
Eco130I	CCWWGG	1 cut(s)	257
Eco32I	GATATC	1 cut(s)	493
Eco57I	CTGAAG	3 cut(s)	48, 180, 307
Eco88I	CYCGRG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaiI	YATR	4 cut(s)	39, 282, 419, 476
Fnu4HI	GCNGC	3 cut(s)	378, 381, 408
FokI	GGATG	2 cut(s)	311, 483
Fsp4HI	GCNGC	3 cut(s)	378, 381, 408
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	3 cut(s)	378, 381, 408
GsuI	CTGGAG	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HphI	GGTGA	2 cut(s)	59, 262
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	397, 503
Hpy188III	TCNNGA	6 cut(s)	71, 73, 211, 239, 265, 468
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	25, 424
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	104
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	3 cut(s)	367, 389, 394
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	3 cut(s)	173, 313, 364
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	4 cut(s)	143, 360, 445, 457
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	6 cut(s)	19, 22, 100, 307, 348, 481
MseI	TTAA	5 cut(s)	96, 191, 329, 348, 425
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	156
PkrI	GCNGC	3 cut(s)	379, 382, 409
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PstI	CTGCAG	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	5 cut(s)	96, 191, 329, 348, 425
SatI	GCNGC	3 cut(s)	378, 381, 408
Sau3AI	GATC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	9 cut(s)	11, 138, 168, 208, 263, 306, 329, 382, 454
SfcI	CTRYAG	1 cut(s)	408
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	4 cut(s)	143, 360, 445, 457
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	257
TaqI	TCGA	3 cut(s)	72, 103, 264
TasI	AATT	4 cut(s)	143, 360, 445, 457
Tru1I	TTAA	5 cut(s)	96, 191, 329, 348, 425
Tru9I	TTAA	5 cut(s)	96, 191, 329, 348, 425
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	3 cut(s)	377, 380, 407
TspDTI	ATGAA	2 cut(s)	17, 216
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	3 cut(s)	143, 445, 457
XhoI	CTCGAG	1 cut(s)	71
XmaJI	CCTAGG	1 cut(s)	257
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.