Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005434

Physical Location & Seq

Genomic Coordinates Forward (+)

18270381 .. 18272573

Gene Structure 2193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00096950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCTGGGCAAAGCCAGCGTTTGAATGTGGTTCCTACTGTTACAATGCTTGGAGTTATGAAAGCTCGTCTTGTTGGTGCAACTAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTCTAACTGTGCAGTTTCGTACGATTCTTAAAAAGATTGTGTCAACCAAAGAATCAATGGGAGAAATTATGAAAACCTCCTCCTTCGCCCTTACTGAAGCCAAGTATGTTGCTGGTGAGAACATCAAACACATTGTTCTCGAGAATGTCAACACTGCCTCTCTTAAAGTTCGATCAAAGCAAGAGAATGTTGCTGGTGTAAAGCTCCCAAAATTTGAATACTTTACTGAAGGTGAGACCAAGAACGACCTCACTGGATTGGCCAGAGGTGGACAACAGGTTCAACTGTGCAAGGCTGCTTATGTGAAAGCAATTGAGGTTCTTGTGGAGCTTGCTTCACTTCAAACATCATTTTTAACCCTTGATGAAGCAATCAAGAGCACAAATCGCAGGGTCAATGCTCTGGAGAATGTGGTGAAGCCTAGGTTGGAGAATACAATAACTTACATCAAGGGGGAGTTGGATGAGCTGGAAAGGGAGGACTTCTTCAGGTTAAAGAAGATACAGGGATTTAAGAAGAGGGAAATTGAGAGACAGATGGCAGCTGCTAAGAACTTCTCGGACGACCAGGCTGCAGAAGTTATTTCTTTAAAGAAGGGTATTTCGCTAAATTCAGCTCAAAATTTGTTGTCTGGAGGTATGGGAAAGGACGAGGATATCATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

261

Amino Acids

28.93

Weight (kDa)

9.54

Isoelectric Point (pI)

26.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_D	PF01813	17 - 208	5.2e-68	ATP synthase subunit D

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58730
fragaria_vesca	FvH4_6g37711 FvH4_6g37711
malus_domestica	MD09G1156500.v1.1 MD17G1143000.v1.1
prunus_persica	Prupe.3G169600_v2.0.a1
pyrus_communis	pycom09g07520 pycom17g13610
rosa_chinensis	RchiOBHm_Chr2g0150801
rosa_laevigata	RLG00000020504
rosa_multiflora	Rmu_sc0002082.1_g000019 Rmu_sc0003127.1_g000004 Rmu_sc0003127.1_g000015 Rmu_sc0003127.1_g000036 Rmu_sc0003127.1_g000056 Rmu_sc0009104.1_g000012 Rmu_sc0009104.1_g000021 Rmu_ssc0000480.1_g000062
rosa_roxburghii	Rroxscaffold_2G00096950
rosa_rugosa	Rorug02G0422500
rosa_samantha	Rh2AG482600 Rh2BG494500 Rh2CG468900 Rh2DG503500 Rh2DG505000 Rh2DG506000
rosa_wichuraiana	Rw2G039390 Rw2G039540 Rw2G039550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	3 cut(s)	329, 727, 739
AcuI	CTGAAG	3 cut(s)	234, 366, 589
AfaI	GTAC	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	25, 335, 401, 461
AjnI	CCWGG	1 cut(s)	684
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	6 cut(s)	65, 322, 448, 586, 662, 734
AluI	AGCT	6 cut(s)	65, 322, 448, 586, 662, 734
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	2 cut(s)	347, 643
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	4 cut(s)	413, 659, 662, 689
ApoI	RAATTY	3 cut(s)	329, 727, 739
AspA2I	CCTAGG	1 cut(s)	539
AsuHPI	GGTGA	3 cut(s)	245, 362, 544
AvaI	CYCGRG	1 cut(s)	257
AvrII	CCTAGG	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	4 cut(s)	400, 649, 671, 676
BccI	CCATC	1 cut(s)	649
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	1 cut(s)	686
BcoDI	GTCTC	2 cut(s)	347, 643
BfaI	CTAG	2 cut(s)	84, 540
BfmI	CTRYAG	1 cut(s)	690
BisI	GCNGC	4 cut(s)	414, 660, 663, 690
BlnI	CCTAGG	1 cut(s)	539
BlsI	GCNGC	4 cut(s)	415, 661, 664, 691
Bme1390I	CCNGG	1 cut(s)	686
BmeT110I	CYCGRG	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	686
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	2 cut(s)	542, 771
BpuEI	CTTGAG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	1 cut(s)	586
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	2 cut(s)	89, 187
BseXI	GCAGC	4 cut(s)	400, 649, 671, 676
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	500
BsiHKCI	CYCGRG	1 cut(s)	257
BsiWI	CGTACG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	347, 643
BsnI	GGCC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	694
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	539
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	3 cut(s)	40, 127, 405
Bst6I	CTCTTC	2 cut(s)	104, 629
BstC8I	GCNNGC	2 cut(s)	17, 450
BstDEI	CTNAG	1 cut(s)	666
BstF5I	GGATG	1 cut(s)	586
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	2 cut(s)	347, 643
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 504
BstNI	CCWGG	1 cut(s)	686
BstSCI	CCNGG	1 cut(s)	684
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	4 cut(s)	400, 649, 671, 676
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	586
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	270, 369
Cac8I	GCNNGC	2 cut(s)	17, 450
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	1 cut(s)	92
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	666
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
DraI	TTTAAA	1 cut(s)	708
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	104, 629
EarI	CTCTTC	2 cut(s)	104, 629
Eco130I	CCWWGG	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	775
Eco57I	CTGAAG	3 cut(s)	234, 366, 589
Eco88I	CYCGRG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	684
EcoRV	GATATC	1 cut(s)	775
EcoT14I	CCWWGG	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	1 cut(s)	95
FaiI	YATR	6 cut(s)	59, 93, 188, 225, 420, 758
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	414, 660, 663, 690
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	4 cut(s)	414, 660, 663, 690
FspBI	CTAG	2 cut(s)	84, 540
GluI	GCNGC	4 cut(s)	414, 660, 663, 690
GsuI	CTGGAG	2 cut(s)	542, 771
HaeIII	GGCC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	95
HincII	GTYRAC	2 cut(s)	162, 268
HindII	GTYRAC	2 cut(s)	162, 268
HinfI	GANTC	2 cut(s)	142, 170
HphI	GGTGA	3 cut(s)	245, 362, 544
Hpy166II	GTNNAC	3 cut(s)	162, 268, 389
Hpy188I	TCNGA	2 cut(s)	679, 785
Hpy188III	TCNNGA	6 cut(s)	103, 257, 259, 493, 521, 750
Hpy8I	GTNNAC	3 cut(s)	162, 268, 389
HpyAV	CCTTC	3 cut(s)	211, 341, 706
HpyCH4III	ACNGT	3 cut(s)	40, 127, 405
HpyCH4V	TGCA	4 cut(s)	80, 130, 408, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 504
HpyF3I	CTNAG	1 cut(s)	666
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	327, 445
Lsp1109I	GCAGC	4 cut(s)	400, 649, 671, 676
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	84, 540
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	5 cut(s)	118, 121, 595, 628, 646
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	500
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	6 cut(s)	183, 329, 429, 642, 727, 739
MluNI	TGGCCA	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	525, 558
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	6 cut(s)	147, 282, 473, 611, 630, 707
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	662
MspR9I	CCNGG	1 cut(s)	686
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	686
MwoI	GCNNNNNNNGC	2 cut(s)	16, 504
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	142, 170
Pfl23II	CGTACG	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	415, 661, 664, 691
Psp6I	CCWGG	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	684
PspLI	CGTACG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	6 cut(s)	147, 282, 473, 611, 630, 707
SatI	GCNGC	4 cut(s)	414, 660, 663, 690
Sau3AI	GATC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	686
SduI	GDGCHC	1 cut(s)	500
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	101, 257
SmoI	CTYRAG	2 cut(s)	101, 257
Sse9I	AATT	6 cut(s)	183, 329, 429, 642, 727, 739
SspMI	CTAG	2 cut(s)	84, 540
StyD4I	CCNGG	1 cut(s)	684
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	3 cut(s)	40, 127, 405
TaqI	TCGA	2 cut(s)	258, 289
TasI	AATT	6 cut(s)	183, 329, 429, 642, 727, 739
TfiI	GAWTC	2 cut(s)	142, 170
Tru1I	TTAA	6 cut(s)	147, 282, 473, 611, 630, 707
Tru9I	TTAA	6 cut(s)	147, 282, 473, 611, 630, 707
TscAI	CASTG	2 cut(s)	277, 376
TseI	GCWGC	4 cut(s)	413, 659, 662, 689
TspDTI	ATGAA	3 cut(s)	74, 203, 498
TspRI	CASTG	2 cut(s)	277, 376
XapI	RAATTY	3 cut(s)	329, 727, 739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	257
XmaJI	CCTAGG	1 cut(s)	539
XspI	CTAG	2 cut(s)	84, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.