AT3G60415

CONTAINS InterPro DOMAIN s Phosphoglycerate mutase (InterPro IPR013078), PRIB5 (InterPro IPR012398)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006635
Physical Location & Seq
Forward (+)
22334424 .. 22335858
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60415.1

Sequence Viewer

Length: 813 bp
ATGGAGTCGGCTAAATCAATCATCGGTGGCCACCAAAATGTCATCCTGATGCGTCATGGTGATCGACTCGACAATTTCGAGCCACTCTGGACTTCAACAGCTGCGAGACCGTGGGATCCACCGCTTGCTCAAGACGGTAAGGATCGGGCCTTTAGAACTGGTCAGAGAATCCGGTCTCAACTTGGGGTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGCTGCATCCAGACCGCTTCCGAAGTCGTTGCCGCCCTCTCAGCCGTCGATTTCGATCCCATTGCTATGTCATCTAAAGACGTGCTTTCCATCGACAATACTAAGATCAAGGTGGCTATTGAATTTGGATTGTCCGAGATACCGCACCCAATCTTTATTAAGAGTGAAGTTGCTCCCAAAGATGGGAAATTTGATTTCAAGATTTCAGATCTTGAAGCTATGTTTCCTGAAGGAACAGTGGATTCTAATGTGGATATGGTTTATAAAGAGGTGCCAGAATGGGGAGAATCTGCACAAGCCTTTGAGGATCGATATTATAAGACAGTGAAGATTCTTGCGGAGAAGTATCCTTCTGAGAACTTGCTCTTAGTCACTCATTGGGGAGCAGTAAGTGTTGCATTTTACAACTACTTCAAAGACGCAACTAAGTACGTGGTAGATTATTGTGGTAGTGTTGAAATGAGAAGGCAGATTTTGAATGGTGATGGGTTTGGTAAATTTGAGGTAGTTACTAGTCATGGAGTATCTTATAAGTACACCAAAATCCCAGTCCATGATCATGTAGTTGTAAGCCGCCAATCTCCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

270

Amino Acids

30.36

Weight (kDa)

6.08

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 14 - 88 3.2e-07 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 486, 540, 753
AccB1I GGYRCC 1 cut(s) 493
AciI CCGC 7 cut(s) 122, 223, 237, 255, 365, 560, 796
AclWI GGATC 5 cut(s) 110, 123, 150, 272, 537
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 3 cut(s) 344, 410, 719
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 2 cut(s) 653, 758
AfiI CCNNNNNNNGG 3 cut(s) 404, 405, 503
AgsI TTSAA 7 cut(s) 96, 344, 421, 437, 637, 680, 700
AhlI ACTAGT 1 cut(s) 734
AjiI CACGTC 1 cut(s) 304
AluBI AGCT 2 cut(s) 101, 440
AluI AGCT 2 cut(s) 101, 440
Alw26I GTCTC 3 cut(s) 100, 180, 214
AlwI GGATC 5 cut(s) 110, 123, 150, 272, 537
AoxI GGCC 2 cut(s) 28, 147
ApeKI GCWGC 2 cut(s) 101, 225
ApoI RAATTY 3 cut(s) 344, 410, 719
ArsI GACNNNNNNTTYG 2 cut(s) 756, 788
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 3 cut(s) 71, 188, 716
BalI TGGCCA 1 cut(s) 30
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 88, 212
BccI CCATC 3 cut(s) 320, 398, 701
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 4 cut(s) 233, 266, 267, 300
BciVI GTATCC 1 cut(s) 579
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 3 cut(s) 100, 180, 214
BcuI ACTAGT 1 cut(s) 734
BfaI CTAG 1 cut(s) 735
BfuI GTATCC 1 cut(s) 579
BglII AGATCT 1 cut(s) 430
BisI GCNGC 4 cut(s) 102, 226, 255, 796
BlsI GCNGC 4 cut(s) 103, 227, 256, 797
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 3 cut(s) 117, 189, 495
BmrI ACTGGG 1 cut(s) 764
BmsI GCATC 2 cut(s) 39, 237
BmuI ACTGGG 1 cut(s) 764
BpiI GAAGAC 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 532
BsaAI YACGTR 1 cut(s) 655
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 2 cut(s) 100, 180
BsaJI CCNNGG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 3 cut(s) 404, 405, 503
Bse1I ACTGG 2 cut(s) 163, 770
Bse3DI GCAATG 1 cut(s) 282
Bse8I GATNNNNATC 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 532
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 42, 228
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 3 cut(s) 404, 405, 503
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 276, 567
BseNI ACTGG 2 cut(s) 163, 770
BseXI GCAGC 2 cut(s) 88, 212
BsgI GTGCAG 1 cut(s) 498
BshFI GGCC 2 cut(s) 30, 149
BshNI GGYRCC 1 cut(s) 493
BshVI ATCGAT 1 cut(s) 532
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 3 cut(s) 404, 405, 503
BsmAI GTCTC 3 cut(s) 100, 180, 214
BsmBI CGTCTC 1 cut(s) 214
BsnI GGCC 2 cut(s) 30, 149
Bso31I GGTCTC 2 cut(s) 100, 180
Bsp143I GATC 8 cut(s) 61, 115, 142, 277, 327, 430, 529, 778
BspACI CCGC 7 cut(s) 122, 223, 237, 255, 365, 560, 796
BspANI GGCC 2 cut(s) 30, 149
BspCNI CTCAG 2 cut(s) 275, 568
BspDI ATCGAT 1 cut(s) 532
BspLI GGNNCC 3 cut(s) 117, 189, 495
BspPI GGATC 5 cut(s) 110, 123, 150, 272, 537
BspT107I GGYRCC 1 cut(s) 493
BspTNI GGTCTC 2 cut(s) 100, 180
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 2 cut(s) 163, 770
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 8 cut(s) 61, 115, 142, 277, 327, 430, 529, 778
Bst4CI ACNGT 5 cut(s) 111, 137, 200, 460, 547
BstBAI YACGTR 1 cut(s) 655
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 5 cut(s) 262, 324, 576, 589, 648
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 42, 228
BstKTI GATC 8 cut(s) 64, 118, 145, 280, 330, 433, 532, 781
BstMAI GTCTC 3 cut(s) 100, 180, 214
BstMBI GATC 8 cut(s) 61, 115, 142, 277, 327, 430, 529, 778
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 88, 212
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 115, 430
BstYI RGATCY 2 cut(s) 115, 430
Bsu15I ATCGAT 1 cut(s) 532
BsuI GTATCC 1 cut(s) 579
BsuRI GGCC 2 cut(s) 30, 149
BsuTUI ATCGAT 1 cut(s) 532
BtgI CCRYGG 1 cut(s) 110
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 2 cut(s) 42, 228
BtsIMutI CAGTG 2 cut(s) 465, 552
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 147
ClaI ATCGAT 1 cut(s) 532
CseI GACGC 2 cut(s) 41, 650
Csp6I GTAC 2 cut(s) 652, 757
CviAII CATG 4 cut(s) 56, 740, 776, 782
CviQI GTAC 2 cut(s) 652, 757
DdeI CTNAG 5 cut(s) 262, 324, 576, 589, 648
DpnI GATC 8 cut(s) 63, 117, 144, 279, 329, 432, 531, 780
DpnII GATC 8 cut(s) 61, 115, 142, 277, 327, 430, 529, 778
EaeI YGGCCR 1 cut(s) 28
Eco31I GGTCTC 2 cut(s) 100, 180
Eco57I CTGAAG 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 4 cut(s) 59, 743, 779, 785
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 4 cut(s) 55, 739, 775, 781
FbaI TGATCA 1 cut(s) 778
Fnu4HI GCNGC 4 cut(s) 102, 226, 255, 796
FokI GGATG 2 cut(s) 29, 215
Fsp4HI GCNGC 4 cut(s) 102, 226, 255, 796
FspBI CTAG 1 cut(s) 735
GluI GCNGC 4 cut(s) 102, 226, 255, 796
HaeIII GGCC 2 cut(s) 30, 149
HapII CCGG 1 cut(s) 172
HgaI GACGC 2 cut(s) 41, 650
Hin1II CATG 4 cut(s) 59, 743, 779, 785
HinfI GANTC 7 cut(s) 5, 66, 168, 193, 464, 509, 553
HpaII CCGG 1 cut(s) 172
HphI GGTGA 3 cut(s) 71, 188, 716
Hpy166II GTNNAC 1 cut(s) 759
Hpy188I TCNGA 6 cut(s) 165, 192, 244, 358, 430, 577
Hpy188III TCNNGA 7 cut(s) 46, 88, 131, 232, 421, 434, 449
Hpy8I GTNNAC 1 cut(s) 759
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 3 cut(s) 446, 582, 681
HpyCH4III ACNGT 5 cut(s) 111, 137, 200, 460, 547
HpyCH4IV ACGT 2 cut(s) 303, 654
HpyCH4V TGCA 3 cut(s) 228, 515, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 5 cut(s) 262, 324, 576, 589, 648
HpySE526I ACGT 2 cut(s) 303, 654
Hsp92II CATG 4 cut(s) 59, 743, 779, 785
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 8 cut(s) 61, 115, 142, 277, 327, 430, 529, 778
LmnI GCTCC 2 cut(s) 400, 605
LpnPI CCDG 8 cut(s) 59, 73, 144, 185, 245, 462, 510, 783
Lsp1109I GCAGC 2 cut(s) 88, 212
LweI GCATC 2 cut(s) 39, 237
MaeI CTAG 1 cut(s) 735
MaeII ACGT 2 cut(s) 303, 654
MaeIII GTNAC 2 cut(s) 592, 730
MalI GATC 8 cut(s) 63, 117, 144, 279, 329, 432, 531, 780
MboI GATC 8 cut(s) 61, 115, 142, 277, 327, 430, 529, 778
MboII GAAGA 2 cut(s) 196, 562
MflI RGATCY 2 cut(s) 115, 430
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 4 cut(s) 73, 344, 410, 719
MluNI TGGCCA 1 cut(s) 30
MlyI GAGTC 2 cut(s) 14, 60
MnlI CCTC 5 cut(s) 230, 269, 484, 520, 718
Mox20I TGGCCA 1 cut(s) 30
MscI TGGCCA 1 cut(s) 30
MseI TTAA 2 cut(s) 381, 811
MslI CAYNNNNRTG 4 cut(s) 36, 47, 287, 780
Msp20I TGGCCA 1 cut(s) 30
MspA1I CMGCKG 2 cut(s) 101, 225
MspI CCGG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 8 cut(s) 61, 115, 142, 277, 327, 430, 529, 778
NlaIII CATG 4 cut(s) 59, 743, 779, 785
NlaIV GGNNCC 3 cut(s) 117, 189, 495
NmuCI GTSAC 1 cut(s) 592
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 5 cut(s) 168, 193, 464, 509, 553
PkrI GCNGC 4 cut(s) 103, 227, 256, 797
PleI GAGTC 2 cut(s) 13, 60
PpsI GAGTC 2 cut(s) 13, 60
Ppu21I YACGTR 1 cut(s) 655
PsiI TTATAA 3 cut(s) 486, 540, 753
PspN4I GGNNCC 3 cut(s) 117, 189, 495
PspPI GGNCC 1 cut(s) 147
PsuI RGATCY 2 cut(s) 115, 430
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 653, 758
RsaNI GTAC 2 cut(s) 652, 757
RseI CAYNNNNRTG 4 cut(s) 36, 47, 287, 780
SaqAI TTAA 2 cut(s) 381, 811
SatI GCNGC 4 cut(s) 102, 226, 255, 796
Sau3AI GATC 8 cut(s) 61, 115, 142, 277, 327, 430, 529, 778
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 2 cut(s) 14, 60
SetI ASST 7 cut(s) 103, 306, 336, 442, 495, 657, 729
SfaNI GCATC 2 cut(s) 39, 237
SmiMI CAYNNNNRTG 4 cut(s) 36, 47, 287, 780
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SpeI ACTAGT 1 cut(s) 734
Sse9I AATT 4 cut(s) 73, 344, 410, 719
SsiI CCGC 7 cut(s) 122, 223, 237, 255, 365, 560, 796
SspMI CTAG 1 cut(s) 735
TaaI ACNGT 5 cut(s) 111, 137, 200, 460, 547
TaiI ACGT 2 cut(s) 306, 657
TaqI TCGA 7 cut(s) 64, 69, 78, 270, 276, 315, 532
TasI AATT 4 cut(s) 73, 344, 410, 719
TatI WGTACW 1 cut(s) 756
TauI GCSGC 2 cut(s) 257, 798
TfiI GAWTC 5 cut(s) 168, 193, 464, 509, 553
Tru1I TTAA 2 cut(s) 381, 811
Tru9I TTAA 2 cut(s) 381, 811
TscAI CASTG 2 cut(s) 465, 552
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 2 cut(s) 101, 225
Tsp45I GTSAC 1 cut(s) 592
TspRI CASTG 2 cut(s) 465, 552
XapI RAATTY 3 cut(s) 344, 410, 719
XspI CTAG 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.