Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006635

Physical Location & Seq

Genomic Coordinates Forward (+)

22336013 .. 22337617

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGTCTTCTTAATTGCATGTAATATACTATACTTGCATCACGCCATGAAGCAGCAAGAAACAGAGCAAATGAAGTCTAAATCAAACATGGATGGCCACCAACATGTTTTCATGATGCGCCATGGCGATCGCATTGATAAGTTTGAGCCACAATGGGTCTCGACTGCTGCTCGGCCTTGGGATCCACCGCTTATTCAAGGCGGCATGTTTCGAGCGTTTCGAACCGGTCAGATGATCCGATCTCAGATCCATTTTCCCATTCACCGTGTCTTTGTCTCCCCTTTCCTCCGCTGCATCCAAACCGCTTCCGAAGTTATCGCCGCCCTTTCTGACCCCGACGCAAATTCGTCTGATTCCTTCGACAAACCTAAGCTCAAGGTTTCTATTGAATTTGGCTTGAGCGAGATGCTGAACTCAATCGCTTTTAAGCCTGAAGTTGCTCCAAAAGATGGCAAATTTGATTTCAAGATTTCAGAACTTGAAGCTATGTTTCCTGATGGAATGGTGGATCATAATGTAGACCCGGTTTACAAAGAGATGCCACAATGGGAAGAGACTTTGGAAAGTTGCAACAATCGATATGTTAATTTGGTCAAGACTCTTGCTGATAAGTATCCTTGTGAGAATCTGTTGTTAGTCACTCACAGAGAAGGAGTAAGCTTTACATATGCCACATTCTATAAAGAGGCAACGCACAGGTTAGATTTTTGTGCTTGTGTTGAACTACAAAGACAGATCTCCTCTAGTGAAGTTGGAGATTTTGAAGTCGTTACAAGTCATGGTCAAGATGGTATCATGTACCCTCCCTCTAACTCCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

273

Amino Acids

31.18

Weight (kDa)

5.65

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60415 AT3G60420 AT3G60440 AT3G60440 AT3G60450 AT3G60450 AT4G07455
fragaria_vesca	FvH4_7g09660 FvH4_7g09660 FvH4_7g09660
malus_domestica	MD00G1058700.v1.1 MD07G1100900.v1.1
prunus_persica	Prupe.2G124000_v2.0.a1
pyrus_communis	pycom02g18150 pycom07g08250
rosa_chinensis	RchiOBHm_Chr1g0346561
rosa_laevigata	RLG00000028793
rosa_multiflora	Rmu_sc0006463.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308260 Rroxscaffold_4G00308270
rosa_rugosa	Rorug01G0181100
rosa_samantha	Rh1AG200300 Rh1BG166600 Rh1CG185300 Rh1DG197400
rosa_wichuraiana	Rw1G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	5 cut(s)	188, 201, 289, 303, 321
AclWI	GGATC	5 cut(s)	176, 189, 229, 241, 516
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	3 cut(s)	343, 389, 455
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	103
AgeI	ACCGGT	1 cut(s)	224
AgsI	TTSAA	6 cut(s)	197, 389, 466, 482, 722, 764
AluBI	AGCT	3 cut(s)	373, 485, 660
AluI	AGCT	3 cut(s)	373, 485, 660
Alw26I	GTCTC	3 cut(s)	163, 280, 548
AlwI	GGATC	5 cut(s)	176, 189, 229, 241, 516
AoxI	GGCC	2 cut(s)	94, 173
ApeKI	GCWGC	3 cut(s)	52, 167, 291
ApoI	RAATTY	3 cut(s)	343, 389, 455
AsiGI	ACCGGT	1 cut(s)	224
AsiSI	GCGATCGC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	181
BbvI	GCAGC	3 cut(s)	64, 154, 278
BccI	CCATC	4 cut(s)	86, 443, 491, 782
BciVI	GTATCC	1 cut(s)	624
BcnI	CCSGG	1 cut(s)	524
BcoDI	GTCTC	3 cut(s)	163, 280, 548
BfaI	CTAG	1 cut(s)	744
BfuI	GTATCC	1 cut(s)	624
BglII	AGATCT	1 cut(s)	735
BisI	GCNGC	5 cut(s)	53, 168, 202, 292, 321
BlsI	GCNGC	5 cut(s)	54, 169, 203, 293, 322
Bme1390I	CCNGG	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	5 cut(s)	46, 105, 303, 396, 528
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	220
BpuEI	CTTGAG	2 cut(s)	359, 418
BpuMI	CCSGG	1 cut(s)	524
Bsa29I	ATCGAT	1 cut(s)	577
BsaBI	GATNNNNATC	1 cut(s)	612
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	121, 176
BsaWI	WCCGGW	2 cut(s)	224, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse118I	RCCGGY	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	612
BseCI	ATCGAT	1 cut(s)	577
BseDI	CCNNGG	2 cut(s)	121, 176
BseGI	GGATG	2 cut(s)	97, 294
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	730
BseXI	GCAGC	3 cut(s)	64, 154, 278
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	96, 175
BshTI	ACCGGT	1 cut(s)	224
BshVI	ATCGAT	1 cut(s)	577
BsiEI	CGRYCG	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	225, 524, 816
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	3 cut(s)	163, 280, 548
BsnI	GGCC	2 cut(s)	96, 175
Bso31I	GGTCTC	1 cut(s)	163
Bsp119I	TTCGAA	1 cut(s)	220
Bsp143I	GATC	7 cut(s)	127, 181, 234, 239, 246, 508, 735
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	5 cut(s)	188, 201, 289, 303, 321
BspANI	GGCC	2 cut(s)	96, 175
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	577
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	5 cut(s)	176, 189, 229, 241, 516
BspT104I	TTCGAA	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	121, 176
BssMI	GATC	7 cut(s)	127, 181, 234, 239, 246, 508, 735
BssT1I	CCWWGG	2 cut(s)	121, 176
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	546
BstBI	TTCGAA	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	243, 369
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	97, 294
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	7 cut(s)	130, 184, 237, 242, 249, 511, 738
BstMAI	GTCTC	3 cut(s)	163, 280, 548
BstMBI	GATC	7 cut(s)	127, 181, 234, 239, 246, 508, 735
BstMCI	CGRYCG	1 cut(s)	130
BstNSI	RCATGY	3 cut(s)	21, 107, 208
BstSCI	CCNGG	1 cut(s)	522
BstV1I	GCAGC	3 cut(s)	64, 154, 278
BstX2I	RGATCY	3 cut(s)	181, 246, 735
BstYI	RGATCY	3 cut(s)	181, 246, 735
Bsu15I	ATCGAT	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	624
BsuRI	GGCC	2 cut(s)	96, 175
BsuTUI	ATCGAT	1 cut(s)	577
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	97, 294
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	224
ClaI	ATCGAT	1 cut(s)	577
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	799
CspAI	ACCGGT	1 cut(s)	224
CviAII	CATG	9 cut(s)	18, 46, 88, 104, 112, 122, 205, 779, 796
CviJI	RGCY	8 cut(s)	96, 148, 175, 373, 396, 430, 485, 660
CviKI_1	RGCY	8 cut(s)	96, 148, 175, 373, 396, 430, 485, 660
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	2 cut(s)	243, 369
DpnI	GATC	7 cut(s)	129, 183, 236, 241, 248, 510, 737
DpnII	GATC	7 cut(s)	127, 181, 234, 239, 246, 508, 735
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	121, 176
Eco31I	GGTCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	453
EcoT14I	CCWWGG	2 cut(s)	121, 176
ErhI	CCWWGG	2 cut(s)	121, 176
FaeI	CATG	9 cut(s)	21, 49, 91, 107, 115, 125, 208, 782, 799
FatI	CATG	9 cut(s)	17, 45, 87, 103, 111, 121, 204, 778, 795
FauNDI	CATATG	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	5 cut(s)	53, 168, 202, 292, 321
FokI	GGATG	2 cut(s)	104, 281
Fsp4HI	GCNGC	5 cut(s)	53, 168, 202, 292, 321
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	5 cut(s)	53, 168, 202, 292, 321
HaeIII	GGCC	2 cut(s)	96, 175
HapII	CCGG	3 cut(s)	225, 524, 816
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	9 cut(s)	21, 49, 91, 107, 115, 125, 208, 782, 799
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	3 cut(s)	353, 598, 625
HpaII	CCGG	3 cut(s)	225, 524, 816
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	520, 529
Hpy188I	TCNGA	7 cut(s)	231, 239, 246, 310, 331, 352, 475
Hpy188III	TCNNGA	6 cut(s)	112, 160, 466, 494, 595, 785
Hpy8I	GTNNAC	2 cut(s)	520, 529
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	367, 644
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	4 cut(s)	17, 37, 294, 570
HpyF3I	CTNAG	2 cut(s)	243, 369
Hsp92II	CATG	9 cut(s)	21, 49, 91, 107, 115, 125, 208, 782, 799
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	7 cut(s)	127, 181, 234, 239, 246, 508, 735
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	5 cut(s)	238, 444, 507, 537, 682
Lsp1109I	GCAGC	3 cut(s)	64, 154, 278
LweI	GCATC	5 cut(s)	46, 105, 303, 396, 528
MaeI	CTAG	1 cut(s)	744
MaeIII	GTNAC	2 cut(s)	637, 769
MalI	GATC	7 cut(s)	129, 183, 236, 241, 248, 510, 737
MboI	GATC	7 cut(s)	127, 181, 234, 239, 246, 508, 735
MboII	GAAGA	1 cut(s)	563
MflI	RGATCY	3 cut(s)	181, 246, 735
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	5 cut(s)	12, 343, 389, 455, 586
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	5 cut(s)	296, 679, 751, 813, 817
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	4 cut(s)	11, 426, 585, 820
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	3 cut(s)	225, 524, 816
MspR9I	CCNGG	1 cut(s)	524
NciI	CCSGG	1 cut(s)	524
NcoI	CCATGG	1 cut(s)	121
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	7 cut(s)	127, 181, 234, 239, 246, 508, 735
NlaIII	CATG	9 cut(s)	21, 49, 91, 107, 115, 125, 208, 782, 799
NlaIV	GGNNCC	1 cut(s)	183
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	637
NspI	RCATGY	3 cut(s)	21, 107, 208
NspV	TTCGAA	1 cut(s)	220
PagI	TCATGA	1 cut(s)	111
PciI	ACATGT	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	353, 625
PflMI	CCANNNNNTGG	1 cut(s)	449
PinAI	ACCGGT	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	54, 169, 203, 293, 322
Ple19I	CGATCG	1 cut(s)	130
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PscI	ACATGT	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	183
PsuI	RGATCY	3 cut(s)	181, 246, 735
PvuI	CGATCG	1 cut(s)	130
RgaI	GCGATCGC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	11, 426, 585, 820
SatI	GCNGC	5 cut(s)	53, 168, 202, 292, 321
Sau3AI	GATC	7 cut(s)	127, 181, 234, 239, 246, 508, 735
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	1 cut(s)	524
SetI	ASST	6 cut(s)	370, 375, 381, 487, 662, 701
SfaAI	GCGATCGC	1 cut(s)	130
SfaNI	GCATC	5 cut(s)	46, 105, 303, 396, 528
SfuI	TTCGAA	1 cut(s)	220
SgfI	GCGATCGC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	374, 397
SmoI	CTYRAG	2 cut(s)	374, 397
Sse9I	AATT	5 cut(s)	12, 343, 389, 455, 586
SsiI	CCGC	5 cut(s)	188, 201, 289, 303, 321
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	2 cut(s)	121, 176
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	5 cut(s)	161, 211, 220, 360, 577
TasI	AATT	5 cut(s)	12, 343, 389, 455, 586
TauI	GCSGC	2 cut(s)	204, 323
TfiI	GAWTC	2 cut(s)	353, 625
Tru1I	TTAA	4 cut(s)	11, 426, 585, 820
Tru9I	TTAA	4 cut(s)	11, 426, 585, 820
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	3 cut(s)	52, 167, 291
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	3 cut(s)	62, 86, 100
Van91I	CCANNNNNTGG	1 cut(s)	449
XapI	RAATTY	3 cut(s)	343, 389, 455
XceI	RCATGY	3 cut(s)	21, 107, 208
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.