Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006635

Physical Location & Seq

Genomic Coordinates Forward (+)

10714742 .. 10718087

Gene Structure 3346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1058700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGACGCGTCCAAAAATCAATCCAAATCGATCAGCCAAGACTCCGATCCGCCCACGGCCCACCACTTCCAAAACGTCGTTGTCATGCGCCACGGCGACCGCATCGACAACTTCGAGCCCCTCTGGACATCGCAATCACCCAGGCCGTGGGACCCACCTCTGATCGAAGAGGGCAAGCTCCGGGCCTTCTGCACGGGTACCAAGCTCCGATCGGATCTCGGGTTTCCAATACATCGCGTCTTCGTCTCGCCATTCGTGCGATGCGTCGAGACTGCCGTCCAAGTCGTCACCGCCCTTTCCGCCACCGAAGGCCCTTCTCTCTCCAAATACGAGAGCGACCAGCCGGTCACCGTCGACCCTTCTAAGCTTAAGGTCTCAATTGAATATGGGTTATGCGAGATGCTAAACAAAGAGGCGATTCACGGTGATTTGGCTCCGAAAGATGAGCAATGGGATTTCAACATACCAGATCTTGAGGCTATGTTCCCGGCTGGGACAGTTGATCAAACTGCGAAACGAGTGTACAAAGATTTGCCCCATTGGGGAGAGAGCGTGACTGGTGCGCGTGCTAGATATGCTCAGGTCATTGAGGCCCTTGCTGATAAATACCCTGCAGAAAACTTGCTCCTTGTCACTCATGGTGAAGGAGTTGGTTCTTCAGTTTCCGCATTCCTGGAGGGCGCAACAGTATACGAAGTAGAATACTGTGCATATTTAGAACTAAGAAGGCCCATCAAAGACCAGTCATCAGCTGCAGGAAAGTTTGAGGTAATCGGAAATCGTGGCCGGACTGGGGTAAGTTACTCACTCCTAACCTCAGGAACAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

278

Amino Acids

30.53

Weight (kDa)

5.15

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60415 AT3G60420 AT3G60440 AT3G60440 AT3G60450 AT3G60450 AT4G07455
fragaria_vesca	FvH4_7g09660 FvH4_7g09660 FvH4_7g09660
malus_domestica	MD00G1058700.v1.1 MD07G1100900.v1.1
prunus_persica	Prupe.2G124000_v2.0.a1
pyrus_communis	pycom02g18150 pycom07g08250
rosa_chinensis	RchiOBHm_Chr1g0346561
rosa_laevigata	RLG00000028793
rosa_multiflora	Rmu_sc0006463.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308260 Rroxscaffold_4G00308270
rosa_rugosa	Rorug01G0181100
rosa_samantha	Rh1AG200300 Rh1BG166600 Rh1CG185300 Rh1DG197400
rosa_wichuraiana	Rw1G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccI	GTMKAC	2 cut(s)	354, 690
AccII	CGCG	3 cut(s)	8, 237, 565
AciI	CCGC	5 cut(s)	50, 100, 291, 300, 666
AclWI	GGATC	2 cut(s)	41, 222
AcoI	YGGCCR	1 cut(s)	784
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	2 cut(s)	199, 524
AfiI	CCNNNNNNNGG	3 cut(s)	147, 542, 793
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	2 cut(s)	383, 460
AjnI	CCWGG	2 cut(s)	140, 672
AluBI	AGCT	4 cut(s)	178, 205, 367, 752
AluI	AGCT	4 cut(s)	178, 205, 367, 752
Alw26I	GTCTC	3 cut(s)	250, 263, 379
AlwI	GGATC	2 cut(s)	41, 222
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	7 cut(s)	57, 143, 183, 310, 591, 728, 784
ApeKI	GCWGC	1 cut(s)	752
Asp718I	GGTACC	1 cut(s)	197
AspLEI	GCGC	3 cut(s)	90, 565, 683
AspS9I	GGNCC	6 cut(s)	58, 151, 183, 311, 592, 729
AsuC2I	CCSGG	2 cut(s)	182, 488
AsuHPI	GGTGA	5 cut(s)	129, 280, 340, 437, 653
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	817
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	4 cut(s)	72, 109, 130, 260
BciT130I	CCWGG	2 cut(s)	142, 674
BclI	TGATCA	1 cut(s)	502
BcnI	CCSGG	2 cut(s)	182, 488
BcoDI	GTCTC	3 cut(s)	250, 263, 379
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	2 cut(s)	612, 753
BfrI	CTTAAG	1 cut(s)	368
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	1 cut(s)	753
BlsI	GCNGC	1 cut(s)	754
Bme1390I	CCNGG	4 cut(s)	142, 182, 488, 674
Bme18I	GGWCC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	6 cut(s)	58, 151, 183, 311, 592, 729
BmiI	GGNNCC	4 cut(s)	152, 153, 199, 435
BmrFI	CCNGG	4 cut(s)	142, 182, 488, 674
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	3 cut(s)	111, 251, 390
BmuI	ACTGGG	1 cut(s)	801
BoxI	GACNNNNGTC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	494
BpuMI	CCSGG	2 cut(s)	182, 488
Bsa29I	ATCGAT	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	4 cut(s)	54, 91, 140, 146
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 542, 793
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	3 cut(s)	562, 742, 796
Bse21I	CCTNAGG	1 cut(s)	817
Bse3DI	GCAATG	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	142, 674
BseCI	ATCGAT	1 cut(s)	29
BseDI	CCNNGG	4 cut(s)	54, 91, 140, 146
BseLI	CCNNNNNNNGG	3 cut(s)	147, 542, 793
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	2 cut(s)	593, 831
BseNI	ACTGG	3 cut(s)	562, 742, 796
BseXI	GCAGC	1 cut(s)	739
BseYI	CCCAGC	1 cut(s)	491
BsgI	GTGCAG	1 cut(s)	175
Bsh1236I	CGCG	3 cut(s)	8, 237, 565
Bsh1285I	CGRYCG	2 cut(s)	100, 212
BshFI	GGCC	7 cut(s)	59, 145, 185, 312, 593, 730, 786
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	29
BsiEI	CGRYCG	2 cut(s)	100, 212
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	4 cut(s)	181, 344, 488, 787
BslFI	GGGAC	2 cut(s)	164, 508
BslI	CCNNNNNNNGG	3 cut(s)	147, 542, 793
BsmAI	GTCTC	3 cut(s)	250, 263, 379
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	164, 508
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	7 cut(s)	59, 145, 185, 312, 593, 730, 786
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	7 cut(s)	30, 46, 162, 209, 214, 469, 502
BspACI	CCGC	5 cut(s)	50, 100, 291, 300, 666
BspANI	GGCC	7 cut(s)	59, 145, 185, 312, 593, 730, 786
BspCNI	CTCAG	2 cut(s)	592, 830
BspDI	ATCGAT	1 cut(s)	29
BspFNI	CGCG	3 cut(s)	8, 237, 565
BspLI	GGNNCC	4 cut(s)	152, 153, 199, 435
BspMAI	CTGCAG	2 cut(s)	616, 757
BspPI	GGATC	2 cut(s)	41, 222
BspT107I	GGYRCC	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	3 cut(s)	562, 742, 796
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	4 cut(s)	54, 91, 140, 146
BssMI	GATC	7 cut(s)	30, 46, 162, 209, 214, 469, 502
BssNAI	GTATAC	1 cut(s)	691
Bst1107I	GTATAC	1 cut(s)	691
Bst2UI	CCWGG	2 cut(s)	142, 674
Bst4CI	ACNGT	5 cut(s)	352, 425, 499, 688, 707
Bst6I	CTCTTC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	522
BstC8I	GCNNGC	2 cut(s)	176, 567
BstDEI	CTNAG	4 cut(s)	363, 579, 722, 817
BstDSI	CCRYGG	3 cut(s)	54, 91, 146
BstEII	GGTNACC	1 cut(s)	346
BstFNI	CGCG	3 cut(s)	8, 237, 565
BstHHI	GCGC	3 cut(s)	90, 565, 683
BstKTI	GATC	7 cut(s)	33, 49, 165, 212, 217, 472, 505
BstMAI	GTCTC	3 cut(s)	250, 263, 379
BstMBI	GATC	7 cut(s)	30, 46, 162, 209, 214, 469, 502
BstMCI	CGRYCG	2 cut(s)	100, 212
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 299, 575
BstNI	CCWGG	2 cut(s)	142, 674
BstPAI	GACNNNNGTC	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	346
BstSCI	CCNGG	4 cut(s)	140, 180, 486, 672
BstSFI	CTRYAG	2 cut(s)	612, 753
BstUI	CGCG	3 cut(s)	8, 237, 565
BstV1I	GCAGC	1 cut(s)	739
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	2 cut(s)	214, 469
BstYI	RGATCY	2 cut(s)	214, 469
BstZ17I	GTATAC	1 cut(s)	691
Bsu15I	ATCGAT	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	817
BsuRI	GGCC	7 cut(s)	59, 145, 185, 312, 593, 730, 786
BsuTUI	ATCGAT	1 cut(s)	29
BtgI	CCRYGG	3 cut(s)	54, 91, 146
BtgZI	GCGATG	3 cut(s)	114, 218, 274
Cac8I	GCNNGC	2 cut(s)	176, 567
CfoI	GCGC	3 cut(s)	90, 565, 683
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	6 cut(s)	58, 151, 183, 311, 592, 729
ClaI	ATCGAT	1 cut(s)	29
CseI	GACGC	3 cut(s)	14, 226, 253
Csp6I	GTAC	2 cut(s)	198, 523
CviAII	CATG	2 cut(s)	85, 638
CviQI	GTAC	2 cut(s)	198, 523
DdeI	CTNAG	4 cut(s)	363, 579, 722, 817
DpnI	GATC	7 cut(s)	32, 48, 164, 211, 216, 471, 504
DpnII	GATC	7 cut(s)	30, 46, 162, 209, 214, 469, 502
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	784
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EciI	GGCGGA	2 cut(s)	39, 289
Eco24I	GRGCYC	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	817
Eco88I	CYCGRG	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	346
EcoO109I	RGGNCCY	3 cut(s)	151, 311, 592
EcoO65I	GGTNACC	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	140, 672
EcoT38I	GRGCYC	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	2 cut(s)	88, 641
FaiI	YATR	9 cut(s)	86, 387, 394, 464, 482, 576, 639, 691, 712
FaqI	GGGAC	2 cut(s)	164, 508
FatI	CATG	2 cut(s)	84, 637
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	2 cut(s)	354, 690
Fnu4HI	GCNGC	1 cut(s)	753
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	753
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	3 cut(s)	89, 564, 682
GluI	GCNGC	1 cut(s)	753
GsaI	CCCAGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	7 cut(s)	59, 145, 185, 312, 593, 730, 786
HapII	CCGG	4 cut(s)	181, 344, 488, 787
HgaI	GACGC	3 cut(s)	14, 226, 253
HhaI	GCGC	3 cut(s)	90, 565, 683
Hin1II	CATG	2 cut(s)	88, 641
Hin6I	GCGC	3 cut(s)	88, 563, 681
HinP1I	GCGC	3 cut(s)	88, 563, 681
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	2 cut(s)	41, 418
HpaII	CCGG	4 cut(s)	181, 344, 488, 787
HphI	GGTGA	5 cut(s)	129, 280, 340, 437, 653
Hpy166II	GTNNAC	3 cut(s)	355, 523, 691
Hpy188I	TCNGA	6 cut(s)	46, 162, 209, 214, 438, 776
Hpy188III	TCNNGA	4 cut(s)	124, 268, 473, 819
Hpy8I	GTNNAC	3 cut(s)	355, 523, 691
Hpy99I	CGWCG	3 cut(s)	80, 269, 356
HpyAV	CCTTC	6 cut(s)	196, 302, 324, 369, 638, 720
HpyCH4III	ACNGT	5 cut(s)	352, 425, 499, 688, 707
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	192, 614, 710, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 299, 575
HpyF3I	CTNAG	4 cut(s)	363, 579, 722, 817
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	88, 641
HspAI	GCGC	3 cut(s)	88, 563, 681
KflI	GGGWCCC	1 cut(s)	151
KpnI	GGTACC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	7 cut(s)	30, 46, 162, 209, 214, 469, 502
LmnI	GCTCC	4 cut(s)	183, 210, 439, 630
Lsp1109I	GCAGC	1 cut(s)	739
LweI	GCATC	3 cut(s)	111, 251, 390
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	5 cut(s)	286, 346, 553, 631, 800
MalI	GATC	7 cut(s)	32, 48, 164, 211, 216, 471, 504
MboI	GATC	7 cut(s)	30, 46, 162, 209, 214, 469, 502
MboII	GAAGA	3 cut(s)	179, 232, 648
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	2 cut(s)	214, 469
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	1 cut(s)	378
MluI	ACGCGT	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	9 cut(s)	131, 163, 168, 406, 469, 583, 670, 760, 826
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	752
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	4 cut(s)	181, 344, 488, 787
MspR9I	CCNGG	4 cut(s)	142, 182, 488, 674
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	2 cut(s)	142, 674
MvnI	CGCG	3 cut(s)	8, 237, 565
MwoI	GCNNNNNNNGC	3 cut(s)	256, 299, 575
NciI	CCSGG	2 cut(s)	182, 488
NdeII	GATC	7 cut(s)	30, 46, 162, 209, 214, 469, 502
NlaIII	CATG	2 cut(s)	88, 641
NlaIV	GGNNCC	4 cut(s)	152, 153, 199, 435
NmuCI	GTSAC	4 cut(s)	286, 346, 553, 631
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 261, 273
PctI	GAATGC	1 cut(s)	668
PfeI	GAWTC	1 cut(s)	418
PflMI	CCANNNNNTGG	1 cut(s)	147
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	1 cut(s)	754
Ple19I	CGATCG	1 cut(s)	212
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PpuMI	RGGWCCY	1 cut(s)	151
PshAI	GACNNNNGTC	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	140, 672
PspEI	GGTNACC	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	140, 672
PspN4I	GGNNCC	4 cut(s)	152, 153, 199, 435
PspPI	GGNCC	6 cut(s)	58, 151, 183, 311, 592, 729
PspPPI	RGGWCCY	1 cut(s)	151
PstI	CTGCAG	2 cut(s)	616, 757
PsuI	RGATCY	2 cut(s)	214, 469
PvuI	CGATCG	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	2 cut(s)	199, 524
RsaNI	GTAC	2 cut(s)	198, 523
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	753
Sau3AI	GATC	7 cut(s)	30, 46, 162, 209, 214, 469, 502
Sau96I	GGNCC	6 cut(s)	58, 151, 183, 311, 592, 729
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	4 cut(s)	142, 182, 488, 674
SduI	GDGCHC	1 cut(s)	120
SfaNI	GCATC	3 cut(s)	111, 251, 390
SfcI	CTRYAG	2 cut(s)	612, 753
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	2 cut(s)	368, 473
SmoI	CTYRAG	2 cut(s)	368, 473
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	5 cut(s)	50, 100, 291, 300, 666
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	4 cut(s)	140, 180, 486, 672
TaaI	ACNGT	5 cut(s)	352, 425, 499, 688, 707
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	6 cut(s)	29, 105, 114, 165, 267, 354
TasI	AATT	1 cut(s)	378
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	4 cut(s)	286, 346, 553, 631
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	4 cut(s)	286, 346, 553, 631
Van91I	CCANNNNNTGG	1 cut(s)	147
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	151
XmiI	GTMKAC	2 cut(s)	354, 690
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.