RLG00000028793
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006635
Physical Location & Seq
Reverse (-)
28083477 .. 28085075
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028793

Sequence Viewer

Length: 825 bp
ATGGACGCCTCCGGCGGTCAAACCCAGCCCCACCGCAACGACTCCCACCATTCCTCCGCCCACCACCACCAAAACGTCGTCGTCATGCGCCACGGCGACCGCATCGACAACTTCGAGCCCCGCTGGATCAAAAACGCCGCCCGCCCGTGGGACCCGCCCCTCGTGGAGGAGGGCCGGGTCCGGGCCTTCTGCACGGGCGCGAAGCTCCGGTCCGATCTCGGGTTCCCGCTCCACCGCGTGTTCGTGTCGCCGTTCGTGCGCTGCGTGGAGACCGCCGTCCAGGTCGTCACCGCGCTCTCCGCTAGCGAAACGCCGTCGTTGGACAAATACGACAGTCGTAAACCCATCCCCGTCGATCCCTCCAAGCTCAAGGTCTCAATTGAATATGGCTTGTGCGAGATGCTAAATAGAGAGGCCATTCGTGGTGATGTAGCTCCAAAAGATGGAAATTGGGGTTTCAACGTCCCAGAACTTGAAGCCATGTTCCCAGAAGGGACTGTGGATCGCACCGTGGAAAGAGTTTACAAAGAGTTGCCCCAGTGGGGAGAGAGTGTGATGGATGCAAGGTCAAGGTATGCTAATGTGGTTCAGGCCCTTGCAGATAAACATCCTATGGAAAATTTGCTCCTTGTCACTCACGGTGAAGGAGTCGGTTCCTCAATTAGTTCTTTCCTGGAGGGTGCCACAGTATATGAAGCAGAGTACTGTGCATATTCAGAACTACGAAGGCCCATCTTCTGCAATGACCAGTCATCGACTGCTGGAAAGTTTGAGGTATTGACAAATCTTGGTCAGACCGGTATCAGTTACTCTCTTGCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

275

Amino Acids

30.48

Weight (kDa)

5.82

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 168 - 225 5.2e-06 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 680
AccB7I CCANNNNNTGG 1 cut(s) 443
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 3 cut(s) 200, 237, 293
AclWI GGATC 3 cut(s) 134, 350, 510
AcsI RAATTY 1 cut(s) 619
AcyI GRCGYC 1 cut(s) 6
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 1 cut(s) 704
AfiI CCNNNNNNNGG 7 cut(s) 147, 148, 166, 181, 219, 443, 542
AgeI ACCGGT 1 cut(s) 797
AgsI TTSAA 3 cut(s) 383, 460, 476
AjnI CCWGG 2 cut(s) 279, 672
AluBI AGCT 3 cut(s) 205, 367, 434
AluI AGCT 3 cut(s) 205, 367, 434
Alw26I GTCTC 2 cut(s) 263, 379
AlwI GGATC 3 cut(s) 134, 350, 510
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 5 cut(s) 172, 183, 414, 591, 728
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 619
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AsiGI ACCGGT 1 cut(s) 797
AspLEI GCGC 4 cut(s) 90, 200, 261, 295
AspS9I GGNCC 7 cut(s) 151, 172, 178, 183, 210, 592, 729
AsuC2I CCSGG 2 cut(s) 176, 182
AsuHPI GGTGA 3 cut(s) 280, 437, 653
AsuNHI GCTAGC 1 cut(s) 302
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 3 cut(s) 151, 178, 210
BanI GGYRCC 1 cut(s) 680
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 161
BbvI GCAGC 1 cut(s) 248
BccI CCATC 4 cut(s) 353, 437, 550, 740
BceAI ACGGC 4 cut(s) 109, 235, 260, 298
BciT130I CCWGG 2 cut(s) 281, 674
BcnI CCSGG 2 cut(s) 176, 182
BcoDI GTCTC 2 cut(s) 263, 379
BfaI CTAG 1 cut(s) 303
BisI GCNGC 2 cut(s) 138, 262
BlsI GCNGC 2 cut(s) 139, 263
BmcAI AGTACT 1 cut(s) 704
Bme1390I CCNGG 4 cut(s) 176, 182, 281, 674
Bme18I GGWCC 3 cut(s) 151, 178, 210
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 7 cut(s) 151, 172, 178, 183, 210, 592, 729
BmiI GGNNCC 6 cut(s) 152, 153, 179, 224, 655, 682
BmrFI CCNGG 4 cut(s) 176, 182, 281, 674
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 3 cut(s) 111, 390, 550
BmtI GCTAGC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 532
BoxI GACNNNNGTC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 2 cut(s) 176, 182
BsaBI GATNNNNATC 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 6
BsaI GGTCTC 2 cut(s) 263, 379
BsaJI CCNNGG 3 cut(s) 91, 146, 510
BsaWI WCCGGW 2 cut(s) 207, 797
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 537, 567
Bsc4I CCNNNNNNNGG 7 cut(s) 147, 148, 166, 181, 219, 443, 542
Bse118I RCCGGY 1 cut(s) 797
Bse1I ACTGG 2 cut(s) 538, 748
Bse3DI GCAATG 1 cut(s) 748
Bse8I GATNNNNATC 1 cut(s) 606
BseBI CCWGG 2 cut(s) 281, 674
BseDI CCNNGG 3 cut(s) 91, 146, 510
BseGI GGATG 3 cut(s) 345, 565, 607
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 7 cut(s) 147, 148, 166, 181, 219, 443, 542
BseMI GCAATG 1 cut(s) 748
BseNI ACTGG 2 cut(s) 538, 748
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 175
Bsh1236I CGCG 3 cut(s) 200, 237, 293
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 5 cut(s) 174, 185, 416, 593, 730
BshNI GGYRCC 1 cut(s) 680
BshTI ACCGGT 1 cut(s) 797
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 5 cut(s) 12, 175, 181, 208, 798
BslFI GGGAC 3 cut(s) 164, 449, 508
BslI CCNNNNNNNGG 7 cut(s) 147, 148, 166, 181, 219, 443, 542
BsmAI GTCTC 2 cut(s) 263, 379
BsmFI GGGAC 3 cut(s) 164, 449, 508
BsnI GGCC 5 cut(s) 174, 185, 416, 593, 730
Bso31I GGTCTC 2 cut(s) 263, 379
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 4 cut(s) 126, 214, 355, 502
BspANI GGCC 5 cut(s) 174, 185, 416, 593, 730
BspFNI CGCG 3 cut(s) 200, 237, 293
BspLI GGNNCC 6 cut(s) 152, 153, 179, 224, 655, 682
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 3 cut(s) 134, 350, 510
BspT107I GGYRCC 1 cut(s) 680
BspTNI GGTCTC 2 cut(s) 263, 379
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 748
BsrFI RCCGGY 1 cut(s) 797
BsrI ACTGG 2 cut(s) 538, 748
BssAI RCCGGY 1 cut(s) 797
BssECI CCNNGG 3 cut(s) 91, 146, 510
BssMI GATC 4 cut(s) 126, 214, 355, 502
BssNI GRCGYC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 2 cut(s) 281, 674
Bst4CI ACNGT 6 cut(s) 335, 499, 511, 641, 688, 707
BstACI GRCGYC 1 cut(s) 6
BstC8I GCNNGC 2 cut(s) 142, 304
BstDSI CCRYGG 3 cut(s) 91, 146, 510
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 3 cut(s) 345, 565, 607
BstFNI CGCG 3 cut(s) 200, 237, 293
BstHHI GCGC 4 cut(s) 90, 200, 261, 295
BstKTI GATC 4 cut(s) 129, 217, 358, 505
BstMAI GTCTC 2 cut(s) 263, 379
BstMBI GATC 4 cut(s) 126, 214, 355, 502
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 256, 299
BstNI CCWGG 2 cut(s) 281, 674
BstPAI GACNNNNGTC 1 cut(s) 275
BstSCI CCNGG 4 cut(s) 174, 180, 279, 672
BstUI CGCG 3 cut(s) 200, 237, 293
BstV1I GCAGC 1 cut(s) 248
BsuRI GGCC 5 cut(s) 174, 185, 416, 593, 730
BtgI CCRYGG 3 cut(s) 91, 146, 510
BtsCI GGATG 3 cut(s) 345, 565, 607
BtsIMutI CAGTG 1 cut(s) 545
Cac8I GCNNGC 2 cut(s) 142, 304
CfoI GCGC 4 cut(s) 90, 200, 261, 295
Cfr10I RCCGGY 1 cut(s) 797
Cfr13I GGNCC 7 cut(s) 151, 172, 178, 183, 210, 592, 729
CpoI CGGWCCG 1 cut(s) 210
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 703
CspAI ACCGGT 1 cut(s) 797
CspI CGGWCCG 1 cut(s) 210
CviAII CATG 2 cut(s) 85, 481
CviQI GTAC 1 cut(s) 703
DpnI GATC 4 cut(s) 128, 216, 357, 504
DpnII GATC 4 cut(s) 126, 214, 355, 502
DraIII CACNNNGTG 1 cut(s) 238
EciI GGCGGA 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 2 cut(s) 263, 379
Eco47I GGWCC 3 cut(s) 151, 178, 210
Eco88I CYCGRG 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoO109I RGGNCCY 2 cut(s) 151, 592
EcoRII CCWGG 2 cut(s) 279, 672
EcoT38I GRGCYC 1 cut(s) 120
FaeI CATG 2 cut(s) 88, 484
FaiI YATR 8 cut(s) 86, 387, 482, 576, 614, 691, 693, 712
FaqI GGGAC 3 cut(s) 164, 449, 508
FatI CATG 2 cut(s) 84, 480
FauI CCCGC 4 cut(s) 128, 149, 162, 234
Fnu4HI GCNGC 2 cut(s) 138, 262
FokI GGATG 3 cut(s) 332, 572, 594
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 138, 262
FspBI CTAG 1 cut(s) 303
GlaI GCGC 4 cut(s) 89, 199, 260, 294
GluI GCNGC 2 cut(s) 138, 262
GsaI CCCAGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 695
HaeIII GGCC 5 cut(s) 174, 185, 416, 593, 730
HapII CCGG 5 cut(s) 12, 175, 181, 208, 798
HgaI GACGC 1 cut(s) 14
HhaI GCGC 4 cut(s) 90, 200, 261, 295
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 2 cut(s) 88, 484
Hin6I GCGC 4 cut(s) 88, 198, 259, 293
HinP1I GCGC 4 cut(s) 88, 198, 259, 293
HinfI GANTC 2 cut(s) 41, 648
HpaII CCGG 5 cut(s) 12, 175, 181, 208, 798
HphI GGTGA 3 cut(s) 280, 437, 653
Hpy166II GTNNAC 2 cut(s) 341, 523
Hpy188I TCNGA 3 cut(s) 214, 718, 795
Hpy8I GTNNAC 2 cut(s) 341, 523
Hpy99I CGWCG 4 cut(s) 80, 83, 319, 356
HpyAV CCTTC 4 cut(s) 196, 485, 638, 720
HpyCH4III ACNGT 6 cut(s) 335, 499, 511, 641, 688, 707
HpyCH4IV ACGT 2 cut(s) 75, 462
HpyCH4V TGCA 6 cut(s) 192, 563, 599, 710, 741, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 299
HpySE526I ACGT 2 cut(s) 75, 462
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 2 cut(s) 88, 484
HspAI GCGC 4 cut(s) 88, 198, 259, 293
KflI GGGWCCC 1 cut(s) 151
Kzo9I GATC 4 cut(s) 126, 214, 355, 502
LmnI GCTCC 4 cut(s) 210, 234, 439, 630
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 3 cut(s) 111, 390, 550
MaeI CTAG 1 cut(s) 303
MaeII ACGT 2 cut(s) 75, 462
MaeIII GTNAC 3 cut(s) 286, 631, 806
MalI GATC 4 cut(s) 128, 216, 357, 504
MbiI CCGCTC 1 cut(s) 229
MboI GATC 4 cut(s) 126, 214, 355, 502
MboII GAAGA 1 cut(s) 727
MfeI CAATTG 1 cut(s) 378
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 4 cut(s) 378, 448, 619, 660
MlyI GAGTC 2 cut(s) 35, 657
MmeI TCCRAC 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 5 cut(s) 12, 175, 181, 208, 798
MspR9I CCNGG 4 cut(s) 176, 182, 281, 674
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 2 cut(s) 281, 674
MvnI CGCG 3 cut(s) 200, 237, 293
MwoI GCNNNNNNNGC 2 cut(s) 256, 299
NciI CCSGG 2 cut(s) 176, 182
NdeII GATC 4 cut(s) 126, 214, 355, 502
NheI GCTAGC 1 cut(s) 302
NlaIII CATG 2 cut(s) 88, 484
NlaIV GGNNCC 6 cut(s) 152, 153, 179, 224, 655, 682
NmuCI GTSAC 2 cut(s) 286, 631
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 261
PflMI CCANNNNNTGG 1 cut(s) 443
PfoI TCCNGGA 1 cut(s) 672
PinAI ACCGGT 1 cut(s) 797
PkrI GCNGC 2 cut(s) 139, 263
PleI GAGTC 2 cut(s) 35, 656
PpsI GAGTC 2 cut(s) 35, 656
PpuMI RGGWCCY 1 cut(s) 151
PshAI GACNNNNGTC 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 279, 672
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 2 cut(s) 279, 672
PspN4I GGNNCC 6 cut(s) 152, 153, 179, 224, 655, 682
PspPI GGNCC 7 cut(s) 151, 172, 178, 183, 210, 592, 729
PspPPI RGGWCCY 1 cut(s) 151
RsaI GTAC 1 cut(s) 704
RsaNI GTAC 1 cut(s) 703
Rsr2I CGGWCCG 1 cut(s) 210
RsrII CGGWCCG 1 cut(s) 210
SatI GCNGC 2 cut(s) 138, 262
Sau3AI GATC 4 cut(s) 126, 214, 355, 502
Sau96I GGNCC 7 cut(s) 151, 172, 178, 183, 210, 592, 729
ScaI AGTACT 1 cut(s) 704
SchI GAGTC 2 cut(s) 35, 657
ScrFI CCNGG 4 cut(s) 176, 182, 281, 674
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 3 cut(s) 111, 390, 550
SinI GGWCC 3 cut(s) 151, 178, 210
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 4 cut(s) 378, 448, 619, 660
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 4 cut(s) 174, 180, 279, 672
TaaI ACNGT 6 cut(s) 335, 499, 511, 641, 688, 707
TaiI ACGT 2 cut(s) 78, 465
TaqI TCGA 4 cut(s) 105, 114, 354, 755
TasI AATT 4 cut(s) 378, 448, 619, 660
TatI WGTACW 1 cut(s) 702
TauI GCSGC 1 cut(s) 140
TscAI CASTG 1 cut(s) 545
TseFI GTSAC 2 cut(s) 286, 631
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 2 cut(s) 286, 631
TspDTI ATGAA 1 cut(s) 708
TspRI CASTG 1 cut(s) 545
Van91I CCANNNNNTGG 1 cut(s) 443
VpaK11BI GGWCC 3 cut(s) 151, 178, 210
XagI CCTNNNNNAGG 1 cut(s) 164
XapI RAATTY 1 cut(s) 619
XspI CTAG 1 cut(s) 303
ZrmI AGTACT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.