Rroxscaffold_4G00308270
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006635
Physical Location & Seq
Forward (+)
29784383 .. 29786297
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00308270.1

Sequence Viewer

Length: 705 bp
ATGGACGCCTCCGGCGGTCAAACCCAGCCCCACCGCAACCACTCCGACCATTCCTCCGCCCACCACCACCAAAACGTCGTCGTCATGCGCCACGGCGACCGCATCGACAACTTCGAGCCCCGCTGGATCAAAAACGCCCCCCCGCCCGTGGGACCCGCCTCTCGTGGAGGAGGGCCGGGTCCGGGCCTTCTGCACAGGCGCCAAGCTCCGGTCCGATCTCGGGTTCCCGGTCCACCGCGTGTTCGTGTCGCCGTCTCAATTGAATATGGCTTGTGCGAGATGCTAAATAGAGAGGCCATTCGTGGTGATGTAGCTCCAAAAGATGGAAATTGGGGTTTCAACATCCCAGAACTTGAAGCCATGTTCCCAGAAGGGACGGTGGATCGCACTGTGGAAAGAGTTTACAAAGAGTTGCCCCAATGGGGAGAGAGTGTGATGGATGCAAGGTCAAGGTATGCTAATGTGGTTCAGGCCCTTGCAGATAAACACCCTATGGAAAATTTGCTTCTTGTCACTCACGGTGAAGGAGTCGGTGCCTCAATTAGTTCATTCCTGGAGGGTGCCACAGTATATGAAGCAGAGTACTGTGCATATTCAGAACTACGAAGGCCCATCTTCGGCAATGACCAGTCATCGACTGCTGGAAAGTTTGAGGTATTGACAAATCTTGGTCAGACCGGTATCAGTTACTCTCTTGAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

234

Amino Acids

25.71

Weight (kDa)

6.2

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 120 - 185 1.7e-06 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 198, 533, 560
AccB7I CCANNNNNTGG 1 cut(s) 323
AccII CGCG 1 cut(s) 238
AciI CCGC 8 cut(s) 15, 34, 57, 100, 121, 143, 156, 236
AclWI GGATC 2 cut(s) 134, 390
AcsI RAATTY 1 cut(s) 499
AcyI GRCGYC 2 cut(s) 6, 199
AdeI CACNNNGTG 1 cut(s) 239
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 8 cut(s) 148, 149, 182, 208, 220, 323, 422, 617
AgeI ACCGGT 1 cut(s) 677
AgsI TTSAA 4 cut(s) 263, 340, 356, 698
AjnI CCWGG 1 cut(s) 552
AluBI AGCT 2 cut(s) 206, 314
AluI AGCT 2 cut(s) 206, 314
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 2 cut(s) 134, 390
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 5 cut(s) 173, 184, 294, 471, 608
ApoI RAATTY 1 cut(s) 499
AsiGI ACCGGT 1 cut(s) 677
AspLEI GCGC 2 cut(s) 90, 201
AspS9I GGNCC 8 cut(s) 152, 173, 179, 184, 211, 230, 472, 609
AsuC2I CCSGG 3 cut(s) 177, 183, 228
AsuHPI GGTGA 2 cut(s) 317, 533
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 4 cut(s) 152, 179, 211, 230
BanI GGYRCC 3 cut(s) 198, 533, 560
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 162
BccI CCATC 3 cut(s) 317, 430, 620
BceAI ACGGC 2 cut(s) 109, 236
BciT130I CCWGG 1 cut(s) 554
BcnI CCSGG 3 cut(s) 177, 183, 228
BcoDI GTCTC 1 cut(s) 259
BfoI RGCGCY 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 4 cut(s) 177, 183, 228, 554
Bme18I GGWCC 4 cut(s) 152, 179, 211, 230
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 8 cut(s) 152, 173, 179, 184, 211, 230, 472, 609
BmiI GGNNCC 7 cut(s) 153, 154, 180, 200, 225, 535, 562
BmrFI CCNGG 4 cut(s) 177, 183, 228, 554
BmsI GCATC 3 cut(s) 111, 270, 430
BpmI CTGGAG 1 cut(s) 575
BpuMI CCSGG 3 cut(s) 177, 183, 228
BsaHI GRCGYC 2 cut(s) 6, 199
BsaJI CCNNGG 2 cut(s) 91, 147
BsaWI WCCGGW 2 cut(s) 208, 677
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 417, 447
Bsc4I CCNNNNNNNGG 8 cut(s) 148, 149, 182, 208, 220, 323, 422, 617
Bse118I RCCGGY 1 cut(s) 677
Bse1I ACTGG 1 cut(s) 628
Bse3DI GCAATG 1 cut(s) 628
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 2 cut(s) 91, 147
BseGI GGATG 2 cut(s) 342, 445
BseLI CCNNNNNNNGG 8 cut(s) 148, 149, 182, 208, 220, 323, 422, 617
BseMI GCAATG 1 cut(s) 628
BseNI ACTGG 1 cut(s) 628
BseRI GAGGAG 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 5 cut(s) 175, 186, 296, 473, 610
BshNI GGYRCC 3 cut(s) 198, 533, 560
BshTI ACCGGT 1 cut(s) 677
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 6 cut(s) 12, 176, 182, 209, 228, 678
BslFI GGGAC 2 cut(s) 165, 388
BslI CCNNNNNNNGG 8 cut(s) 148, 149, 182, 208, 220, 323, 422, 617
BsmAI GTCTC 1 cut(s) 259
BsmBI CGTCTC 1 cut(s) 259
BsmFI GGGAC 2 cut(s) 165, 388
BsnI GGCC 5 cut(s) 175, 186, 296, 473, 610
BsoBI CYCGRG 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 126, 215, 382
BspACI CCGC 8 cut(s) 15, 34, 57, 100, 121, 143, 156, 236
BspANI GGCC 5 cut(s) 175, 186, 296, 473, 610
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 7 cut(s) 153, 154, 180, 200, 225, 535, 562
BspPI GGATC 2 cut(s) 134, 390
BspT107I GGYRCC 3 cut(s) 198, 533, 560
BsrDI GCAATG 1 cut(s) 628
BsrFI RCCGGY 1 cut(s) 677
BsrI ACTGG 1 cut(s) 628
BssAI RCCGGY 1 cut(s) 677
BssECI CCNNGG 2 cut(s) 91, 147
BssMI GATC 3 cut(s) 126, 215, 382
BssNI GRCGYC 2 cut(s) 6, 199
BssSI CACGAG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 5 cut(s) 379, 391, 521, 568, 587
BstACI GRCGYC 2 cut(s) 6, 199
BstDSI CCRYGG 2 cut(s) 91, 147
BstF5I GGATG 2 cut(s) 342, 445
BstFNI CGCG 1 cut(s) 238
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 2 cut(s) 90, 201
BstKTI GATC 3 cut(s) 129, 218, 385
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 3 cut(s) 126, 215, 382
BstMCI CGRYCG 1 cut(s) 100
BstNI CCWGG 1 cut(s) 554
BstSCI CCNGG 4 cut(s) 175, 181, 226, 552
BstUI CGCG 1 cut(s) 238
BsuRI GGCC 5 cut(s) 175, 186, 296, 473, 610
BtgI CCRYGG 2 cut(s) 91, 147
BtsCI GGATG 2 cut(s) 342, 445
BtsIMutI CAGTG 1 cut(s) 387
CfoI GCGC 2 cut(s) 90, 201
Cfr10I RCCGGY 1 cut(s) 677
Cfr13I GGNCC 8 cut(s) 152, 173, 179, 184, 211, 230, 472, 609
CpoI CGGWCCG 1 cut(s) 211
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 583
CspAI ACCGGT 1 cut(s) 677
CspI CGGWCCG 1 cut(s) 211
CviAII CATG 2 cut(s) 85, 361
CviQI GTAC 1 cut(s) 583
DinI GGCGCC 1 cut(s) 200
DpnI GATC 3 cut(s) 128, 217, 384
DpnII GATC 3 cut(s) 126, 215, 382
DraIII CACNNNGTG 1 cut(s) 239
EciI GGCGGA 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 4 cut(s) 152, 179, 211, 230
Eco88I CYCGRG 1 cut(s) 219
EcoO109I RGGNCCY 2 cut(s) 152, 472
EcoRII CCWGG 1 cut(s) 552
EcoT38I GRGCYC 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 200
EheI GGCGCC 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 259
FaeI CATG 2 cut(s) 88, 364
FaiI YATR 8 cut(s) 86, 267, 362, 456, 494, 571, 573, 592
FaqI GGGAC 2 cut(s) 165, 388
FatI CATG 2 cut(s) 84, 360
FauI CCCGC 3 cut(s) 128, 150, 163
FokI GGATG 2 cut(s) 329, 452
FriOI GRGCYC 1 cut(s) 120
GlaI GCGC 2 cut(s) 89, 200
GsaI CCCAGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 575
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 5 cut(s) 175, 186, 296, 473, 610
HapII CCGG 6 cut(s) 12, 176, 182, 209, 228, 678
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 90, 201
Hin1I GRCGYC 2 cut(s) 6, 199
Hin1II CATG 2 cut(s) 88, 364
Hin6I GCGC 2 cut(s) 88, 199
HinP1I GCGC 2 cut(s) 88, 199
HinfI GANTC 1 cut(s) 528
HpaII CCGG 6 cut(s) 12, 176, 182, 209, 228, 678
HphI GGTGA 2 cut(s) 317, 533
Hpy166II GTNNAC 2 cut(s) 233, 403
Hpy188I TCNGA 4 cut(s) 46, 215, 598, 675
Hpy188III TCNNGA 1 cut(s) 695
Hpy8I GTNNAC 2 cut(s) 233, 403
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 4 cut(s) 197, 365, 518, 600
HpyCH4III ACNGT 5 cut(s) 379, 391, 521, 568, 587
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 4 cut(s) 193, 443, 479, 590
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 2 cut(s) 6, 199
Hsp92II CATG 2 cut(s) 88, 364
HspAI GCGC 2 cut(s) 88, 199
KasI GGCGCC 1 cut(s) 198
KflI GGGWCCC 1 cut(s) 152
Kzo9I GATC 3 cut(s) 126, 215, 382
LmnI GCTCC 2 cut(s) 211, 319
LweI GCATC 3 cut(s) 111, 270, 430
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 511, 686
MalI GATC 3 cut(s) 128, 217, 384
MboI GATC 3 cut(s) 126, 215, 382
MboII GAAGA 1 cut(s) 607
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 5 cut(s) 258, 328, 499, 540, 698
Mly113I GGCGCC 1 cut(s) 199
MlyI GAGTC 1 cut(s) 537
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 9 cut(s) 19, 64, 161, 164, 169, 286, 547, 550, 646
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 6 cut(s) 12, 176, 182, 209, 228, 678
MspR9I CCNGG 4 cut(s) 177, 183, 228, 554
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 1 cut(s) 238
NarI GGCGCC 1 cut(s) 199
NciI CCSGG 3 cut(s) 177, 183, 228
NdeII GATC 3 cut(s) 126, 215, 382
NlaIII CATG 2 cut(s) 88, 364
NlaIV GGNNCC 7 cut(s) 153, 154, 180, 200, 225, 535, 562
NmuCI GTSAC 1 cut(s) 511
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 552
PinAI ACCGGT 1 cut(s) 677
PleI GAGTC 1 cut(s) 536
PluTI GGCGCC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 7 cut(s) 153, 154, 180, 200, 225, 535, 562
PspPI GGNCC 8 cut(s) 152, 173, 179, 184, 211, 230, 472, 609
PspPPI RGGWCCY 1 cut(s) 152
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
Rsr2I CGGWCCG 1 cut(s) 211
RsrII CGGWCCG 1 cut(s) 211
Sau3AI GATC 3 cut(s) 126, 215, 382
Sau96I GGNCC 8 cut(s) 152, 173, 179, 184, 211, 230, 472, 609
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 4 cut(s) 177, 183, 228, 554
SduI GDGCHC 1 cut(s) 120
SetI ASST 6 cut(s) 78, 208, 316, 449, 455, 657
SfaNI GCATC 3 cut(s) 111, 270, 430
SfoI GGCGCC 1 cut(s) 200
SinI GGWCC 4 cut(s) 152, 179, 211, 230
Sse9I AATT 5 cut(s) 258, 328, 499, 540, 698
SsiI CCGC 8 cut(s) 15, 34, 57, 100, 121, 143, 156, 236
SspDI GGCGCC 1 cut(s) 198
StyD4I CCNGG 4 cut(s) 175, 181, 226, 552
TaaI ACNGT 5 cut(s) 379, 391, 521, 568, 587
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 105, 114, 635
TasI AATT 5 cut(s) 258, 328, 499, 540, 698
TatI WGTACW 1 cut(s) 582
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 2 cut(s) 537, 588
TspRI CASTG 1 cut(s) 394
Van91I CCANNNNNTGG 1 cut(s) 323
VpaK11BI GGWCC 4 cut(s) 152, 179, 211, 230
XapI RAATTY 1 cut(s) 499
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.