Rh1AG200300
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006635
Physical Location & Seq
Forward (+)
38067789 .. 38071098
3310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG200300.1

Sequence Viewer

Length: 657 bp
ATGCTGACCCTTCCCCTTCGCCTAACTTCAACAACTAAAACCCTCCGTTCACATTTTCTCTCCACCTTCTCCAAAATCGCAATGGACGCCTCCGGCGGTCAAACCCAGCCCCACCGCAACGACTCCGACCATTCCTCCGCCCACCACCACCAAAACGTCGTCGTCATGCGCCACGGCGACCGCATCGACAACTTCGAGCCCCGCTGGATCAAAAACGCCGCCCGCCCGTGGGACCCTCCTCTCGTGGAGGAGGGCCGGGTCCGGGCCTTCTGCACCGGCGCGAAGCTCCGGTCCGATCTCGGGTTCCCGGTCCACCGCGTGTTCGTGTCGCCGTTCGTGCGCTGCGTCGAGACCGCCGTCCAGGTCGTCACCGCGCTCTCCGCTAGCGAGACACCGTCGTTGGACAAATACGACAGTCGTAAACCCCTCCCCGTTGATCCCTCCAAGCTCAAGGTCTCAATTGAATATGGCTTGTGCGAGATGCTAAATAGAGAGGCCATTCGTGGTGATGTAGCTCCAAAAGATGGAAATTGGGGTTTCAACATCCCAGAACTTGAAGCCATGTTCCCAGAAGGGACGGTGGATCGCATTGTGGAAAGAGTTTACAAAGAGGTAATTGAGAAGTGTCTTGGTTTATATGTAAAGATTCAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

218

Amino Acids

24.57

Weight (kDa)

8.35

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 54 - 126 8e-06 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 524
AccII CGCG 3 cut(s) 281, 318, 374
AclWI GGATC 3 cut(s) 215, 431, 591
AcyI GRCGYC 1 cut(s) 87
AdeI CACNNNGTG 1 cut(s) 319
AfiI CCNNNNNNNGG 5 cut(s) 228, 229, 262, 300, 524
AgsI TTSAA 5 cut(s) 30, 464, 541, 557, 650
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 3 cut(s) 286, 448, 515
AluI AGCT 3 cut(s) 286, 448, 515
Alw26I GTCTC 3 cut(s) 344, 383, 460
AlwI GGATC 3 cut(s) 215, 431, 591
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 3 cut(s) 253, 264, 495
ApeKI GCWGC 1 cut(s) 342
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AspLEI GCGC 4 cut(s) 171, 281, 342, 376
AspS9I GGNCC 6 cut(s) 232, 253, 259, 264, 291, 310
AsuC2I CCSGG 3 cut(s) 257, 263, 308
AsuHPI GGTGA 2 cut(s) 361, 518
AsuNHI GCTAGC 1 cut(s) 383
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 4 cut(s) 232, 259, 291, 310
BanII GRGCYC 1 cut(s) 201
BauI CACGAG 1 cut(s) 242
BbvI GCAGC 1 cut(s) 329
BccI CCATC 1 cut(s) 518
BceAI ACGGC 3 cut(s) 190, 316, 341
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 3 cut(s) 257, 263, 308
BcoDI GTCTC 3 cut(s) 344, 383, 460
BfaI CTAG 1 cut(s) 384
BisI GCNGC 2 cut(s) 219, 343
BlsI GCNGC 2 cut(s) 220, 344
Bme1390I CCNGG 4 cut(s) 257, 263, 308, 362
Bme18I GGWCC 4 cut(s) 232, 259, 291, 310
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 6 cut(s) 232, 253, 259, 264, 291, 310
BmiI GGNNCC 4 cut(s) 233, 234, 260, 305
BmrFI CCNGG 4 cut(s) 257, 263, 308, 362
BmsI GCATC 2 cut(s) 192, 471
BmtI GCTAGC 1 cut(s) 387
BoxI GACNNNNGTC 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 3 cut(s) 257, 263, 308
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 2 cut(s) 344, 460
BsaJI CCNNGG 2 cut(s) 172, 227
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 5 cut(s) 228, 229, 262, 300, 524
Bse118I RCCGGY 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 172, 227
BseGI GGATG 1 cut(s) 543
BseLI CCNNNNNNNGG 5 cut(s) 228, 229, 262, 300, 524
BseMI GCAATG 1 cut(s) 87
BseRI GAGGAG 2 cut(s) 228, 263
BseXI GCAGC 1 cut(s) 329
BseYI CCCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 256
Bsh1236I CGCG 3 cut(s) 281, 318, 374
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 3 cut(s) 255, 266, 497
BsiEI CGRYCG 1 cut(s) 181
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 6 cut(s) 93, 256, 262, 276, 289, 308
BslFI GGGAC 2 cut(s) 245, 589
BslI CCNNNNNNNGG 5 cut(s) 228, 229, 262, 300, 524
BsmAI GTCTC 3 cut(s) 344, 383, 460
BsmFI GGGAC 2 cut(s) 245, 589
BsnI GGCC 3 cut(s) 255, 266, 497
Bso31I GGTCTC 2 cut(s) 344, 460
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 4 cut(s) 207, 295, 436, 583
BspANI GGCC 3 cut(s) 255, 266, 497
BspFNI CGCG 3 cut(s) 281, 318, 374
BspLI GGNNCC 4 cut(s) 233, 234, 260, 305
BspOI GCTAGC 1 cut(s) 387
BspPI GGATC 3 cut(s) 215, 431, 591
BspTNI GGTCTC 2 cut(s) 344, 460
BsrDI GCAATG 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 172, 227
BssMI GATC 4 cut(s) 207, 295, 436, 583
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 396, 416, 580
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 223, 385
BstDSI CCRYGG 2 cut(s) 172, 227
BstF5I GGATG 1 cut(s) 543
BstFNI CGCG 3 cut(s) 281, 318, 374
BstHHI GCGC 4 cut(s) 171, 281, 342, 376
BstKTI GATC 4 cut(s) 210, 298, 439, 586
BstMAI GTCTC 3 cut(s) 344, 383, 460
BstMBI GATC 4 cut(s) 207, 295, 436, 583
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 3 cut(s) 86, 337, 380
BstNI CCWGG 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 356
BstSCI CCNGG 4 cut(s) 255, 261, 306, 360
BstUI CGCG 3 cut(s) 281, 318, 374
BstV1I GCAGC 1 cut(s) 329
BsuRI GGCC 3 cut(s) 255, 266, 497
BtgI CCRYGG 2 cut(s) 172, 227
BtsCI GGATG 1 cut(s) 543
Cac8I GCNNGC 2 cut(s) 223, 385
CfoI GCGC 4 cut(s) 171, 281, 342, 376
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 6 cut(s) 232, 253, 259, 264, 291, 310
CpoI CGGWCCG 1 cut(s) 291
CseI GACGC 2 cut(s) 95, 334
CspI CGGWCCG 1 cut(s) 291
CviAII CATG 3 cut(s) 166, 562, 654
DpnI GATC 4 cut(s) 209, 297, 438, 585
DpnII GATC 4 cut(s) 207, 295, 436, 583
DraIII CACNNNGTG 1 cut(s) 319
EciI GGCGGA 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 2 cut(s) 344, 460
Eco47I GGWCC 4 cut(s) 232, 259, 291, 310
Eco88I CYCGRG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 3 cut(s) 169, 565, 657
FaiI YATR 6 cut(s) 167, 468, 563, 637, 639, 655
FaqI GGGAC 2 cut(s) 245, 589
FatI CATG 3 cut(s) 165, 561, 653
FauI CCCGC 2 cut(s) 209, 230
Fnu4HI GCNGC 2 cut(s) 219, 343
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 219, 343
FspBI CTAG 1 cut(s) 384
GlaI GCGC 4 cut(s) 170, 280, 341, 375
GluI GCNGC 2 cut(s) 219, 343
GsaI CCCAGC 1 cut(s) 109
HaeIII GGCC 3 cut(s) 255, 266, 497
HapII CCGG 6 cut(s) 93, 256, 262, 276, 289, 308
HgaI GACGC 2 cut(s) 95, 334
HhaI GCGC 4 cut(s) 171, 281, 342, 376
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 3 cut(s) 169, 565, 657
Hin6I GCGC 4 cut(s) 169, 279, 340, 374
HinP1I GCGC 4 cut(s) 169, 279, 340, 374
HinfI GANTC 2 cut(s) 122, 646
HpaII CCGG 6 cut(s) 93, 256, 262, 276, 289, 308
HphI GGTGA 2 cut(s) 361, 518
Hpy166II GTNNAC 4 cut(s) 50, 313, 422, 604
Hpy188I TCNGA 2 cut(s) 127, 295
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 4 cut(s) 50, 313, 422, 604
Hpy99I CGWCG 4 cut(s) 161, 164, 350, 400
HpyAV CCTTC 5 cut(s) 20, 26, 76, 277, 566
HpyCH4III ACNGT 3 cut(s) 396, 416, 580
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 337, 380
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 3 cut(s) 169, 565, 657
HspAI GCGC 4 cut(s) 169, 279, 340, 374
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 4 cut(s) 207, 295, 436, 583
LmnI GCTCC 2 cut(s) 291, 520
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 2 cut(s) 192, 471
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 367
MalI GATC 4 cut(s) 209, 297, 438, 585
MboI GATC 4 cut(s) 207, 295, 436, 583
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 3 cut(s) 459, 529, 615
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 150, 381
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 6 cut(s) 93, 256, 262, 276, 289, 308
MspR9I CCNGG 4 cut(s) 257, 263, 308, 362
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 3 cut(s) 281, 318, 374
MwoI GCNNNNNNNGC 3 cut(s) 86, 337, 380
NciI CCSGG 3 cut(s) 257, 263, 308
NdeII GATC 4 cut(s) 207, 295, 436, 583
NheI GCTAGC 1 cut(s) 383
NlaIII CATG 3 cut(s) 169, 565, 657
NlaIV GGNNCC 4 cut(s) 233, 234, 260, 305
NmuCI GTSAC 1 cut(s) 367
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 342, 354
PfeI GAWTC 1 cut(s) 646
PflFI GACNNNGTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 524
PkrI GCNGC 2 cut(s) 220, 344
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 232
PshAI GACNNNNGTC 1 cut(s) 356
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 4 cut(s) 233, 234, 260, 305
PspPI GGNCC 6 cut(s) 232, 253, 259, 264, 291, 310
PspPPI RGGWCCY 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 394
Rsr2I CGGWCCG 1 cut(s) 291
RsrII CGGWCCG 1 cut(s) 291
SatI GCNGC 2 cut(s) 219, 343
Sau3AI GATC 4 cut(s) 207, 295, 436, 583
Sau96I GGNCC 6 cut(s) 232, 253, 259, 264, 291, 310
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 4 cut(s) 257, 263, 308, 362
SduI GDGCHC 1 cut(s) 201
SetI ASST 8 cut(s) 68, 159, 288, 366, 450, 456, 517, 615
SfaNI GCATC 2 cut(s) 192, 471
SgrAI CRCCGGYG 1 cut(s) 275
SinI GGWCC 4 cut(s) 232, 259, 291, 310
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 3 cut(s) 459, 529, 615
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 4 cut(s) 255, 261, 306, 360
TaaI ACNGT 3 cut(s) 396, 416, 580
TaiI ACGT 1 cut(s) 159
TaqI TCGA 3 cut(s) 186, 195, 348
TasI AATT 3 cut(s) 459, 529, 615
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 646
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 35
Tth111I GACNNNGTC 1 cut(s) 394
Van91I CCANNNNNTGG 1 cut(s) 524
VpaK11BI GGWCC 4 cut(s) 232, 259, 291, 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.