Rh1DG197400
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006635
Physical Location & Seq
Forward (+)
38913450 .. 38915653
2204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG197400.1

Sequence Viewer

Length: 918 bp
ATGGTCTTTTTCGTCTTCAAAATACACTTTCTTCTTTCTTTGTTTTTTTTTTTTTTTTTTTTGAATAAACACTTTTTTCTTTCGTTTTGGTATAAAGAGGTTAGTTGCAACTTGCAAACCAGAAAATCAGTTAAAAAAGGACCTATAATTCAAGGGAAAGCCTCCGCATTTCTCATGCTGGCCCTTCCCCTTCGCCTAACTTCAACCACTAAAACCCTCCGTTCATATTTTCTCTCCACCTTCTCCAAAATCGCAATGGACGCCTCCGGCGGTCAAACCCAGCCCCACCGCAACGACTCCGACCATTCCTCCGCCCACCACCACCAAAACGTCGTCGTCATGCGCCACGGCGACCGCATCGACAACTTCGAGCCCCGCTGGATCAAAAACGCCCCCCGCCCGTGGGACCCGCCTCTCGTGGAGGAGGGCCGGGTCCGGGCCTTCTGCACGGGCGCCAAGCTCCGGTCCGATCTCGGGTTCCCGGTCCACCGCGTGTTCGTGTCGCCGTTCGTGCGCTGCGTCGAGACCGCCGTCCAGGTCGTCACCGCGCTCTCCGCTAGCGAGACGCCGTCGTTGGACAAATACGACAGTCGTAAACCCCTCCCCGTCGATCCCTCCAAGCTCAAGGTCTCAATTGAATATGGCTTGTGTGAGATGCTAAATAGAGAGGCCATTCGTGGTGATGTAGCTCCAAAAGATGGAAATTGGGGTTTCAACATCCCAGAACTTGAAGCCATGTTCCCAGAAGGGACGGTGGATCGCACCGTGGAAAGAGTTTACAAAGAGTTGCCCCAGTGGGGAGAGAGTGTGATGGATGCAAGGTCAAGGTATGCTAATGTGGTTCAGGCCCTTGCAGATAAACACCCTAAGGAAAATTTGCTCCTTGTCACTCACGGTAGGTTTGATATTTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

305

Amino Acids

34.92

Weight (kDa)

9.3

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 253 - 300 3.6e-06 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 452
AccB7I CCANNNNNTGG 1 cut(s) 698
AccII CGCG 2 cut(s) 492, 548
AclWI GGATC 3 cut(s) 389, 605, 765
AcsI RAATTY 1 cut(s) 874
AcyI GRCGYC 3 cut(s) 261, 453, 566
AdeI CACNNNGTG 1 cut(s) 493
AfiI CCNNNNNNNGG 7 cut(s) 402, 403, 436, 462, 474, 698, 797
AgsI TTSAA 7 cut(s) 19, 64, 152, 204, 638, 715, 731
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 3 cut(s) 460, 622, 689
AluI AGCT 3 cut(s) 460, 622, 689
Alw26I GTCTC 3 cut(s) 518, 557, 634
AlwI GGATC 3 cut(s) 389, 605, 765
Ama87I CYCGRG 1 cut(s) 473
AoxI GGCC 5 cut(s) 180, 427, 438, 669, 846
ApeKI GCWGC 1 cut(s) 516
ApoI RAATTY 1 cut(s) 874
AspLEI GCGC 4 cut(s) 345, 455, 516, 550
AspS9I GGNCC 9 cut(s) 140, 181, 406, 427, 433, 438, 465, 484, 847
AsuC2I CCSGG 3 cut(s) 431, 437, 482
AsuHPI GGTGA 2 cut(s) 535, 692
AsuNHI GCTAGC 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 473
AvaII GGWCC 5 cut(s) 140, 406, 433, 465, 484
AxyI CCTNAGG 1 cut(s) 867
BanI GGYRCC 1 cut(s) 452
BanII GRGCYC 1 cut(s) 375
BauI CACGAG 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 503
BccI CCATC 2 cut(s) 692, 805
BceAI ACGGC 4 cut(s) 364, 490, 515, 553
BciT130I CCWGG 1 cut(s) 536
BcnI CCSGG 3 cut(s) 431, 437, 482
BcoDI GTCTC 3 cut(s) 518, 557, 634
BfaI CTAG 1 cut(s) 558
BfoI RGCGCY 1 cut(s) 456
BisI GCNGC 1 cut(s) 517
BlsI GCNGC 1 cut(s) 518
Bme1390I CCNGG 4 cut(s) 431, 437, 482, 536
Bme18I GGWCC 5 cut(s) 140, 406, 433, 465, 484
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 9 cut(s) 140, 181, 406, 427, 433, 438, 465, 484, 847
BmiI GGNNCC 5 cut(s) 407, 408, 434, 454, 479
BmrFI CCNGG 4 cut(s) 431, 437, 482, 536
BmrI ACTGGG 1 cut(s) 787
BmsI GCATC 3 cut(s) 366, 645, 805
BmtI GCTAGC 1 cut(s) 561
BmuI ACTGGG 1 cut(s) 787
BoxI GACNNNNGTC 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 3 cut(s) 431, 437, 482
BsaHI GRCGYC 3 cut(s) 261, 453, 566
BsaI GGTCTC 2 cut(s) 518, 634
BsaJI CCNNGG 3 cut(s) 346, 401, 765
BsaWI WCCGGW 1 cut(s) 462
BsaXI ACNNNNNCTCC 4 cut(s) 293, 323, 792, 822
Bsc4I CCNNNNNNNGG 7 cut(s) 402, 403, 436, 462, 474, 698, 797
Bse1I ACTGG 1 cut(s) 793
Bse21I CCTNAGG 1 cut(s) 867
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 3 cut(s) 346, 401, 765
BseGI GGATG 2 cut(s) 717, 820
BseLI CCNNNNNNNGG 7 cut(s) 402, 403, 436, 462, 474, 698, 797
BseMI GCAATG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 793
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 1 cut(s) 503
BseYI CCCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 430
Bsh1236I CGCG 2 cut(s) 492, 548
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 5 cut(s) 182, 429, 440, 671, 848
BshNI GGYRCC 1 cut(s) 452
BsiEI CGRYCG 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 5 cut(s) 267, 430, 436, 463, 482
BslFI GGGAC 2 cut(s) 419, 763
BslI CCNNNNNNNGG 7 cut(s) 402, 403, 436, 462, 474, 698, 797
BsmAI GTCTC 3 cut(s) 518, 557, 634
BsmBI CGTCTC 1 cut(s) 557
BsmFI GGGAC 2 cut(s) 419, 763
BsnI GGCC 5 cut(s) 182, 429, 440, 671, 848
Bso31I GGTCTC 2 cut(s) 518, 634
BsoBI CYCGRG 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 4 cut(s) 381, 469, 610, 757
BspANI GGCC 5 cut(s) 182, 429, 440, 671, 848
BspFNI CGCG 2 cut(s) 492, 548
BspLI GGNNCC 5 cut(s) 407, 408, 434, 454, 479
BspOI GCTAGC 1 cut(s) 561
BspPI GGATC 3 cut(s) 389, 605, 765
BspT107I GGYRCC 1 cut(s) 452
BspTNI GGTCTC 2 cut(s) 518, 634
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 793
BssECI CCNNGG 3 cut(s) 346, 401, 765
BssMI GATC 4 cut(s) 381, 469, 610, 757
BssNI GRCGYC 3 cut(s) 261, 453, 566
BssSI CACGAG 1 cut(s) 416
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 4 cut(s) 590, 754, 766, 896
BstACI GRCGYC 3 cut(s) 261, 453, 566
BstC8I GCNNGC 2 cut(s) 180, 559
BstDEI CTNAG 1 cut(s) 867
BstDSI CCRYGG 3 cut(s) 346, 401, 765
BstF5I GGATG 2 cut(s) 717, 820
BstFNI CGCG 2 cut(s) 492, 548
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 4 cut(s) 345, 455, 516, 550
BstKTI GATC 4 cut(s) 384, 472, 613, 760
BstMAI GTCTC 3 cut(s) 518, 557, 634
BstMBI GATC 4 cut(s) 381, 469, 610, 757
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 3 cut(s) 260, 511, 554
BstNI CCWGG 1 cut(s) 536
BstPAI GACNNNNGTC 1 cut(s) 530
BstSCI CCNGG 4 cut(s) 429, 435, 480, 534
BstUI CGCG 2 cut(s) 492, 548
BstV1I GCAGC 1 cut(s) 503
BstV2I GAAGAC 1 cut(s) 7
Bsu36I CCTNAGG 1 cut(s) 867
BsuRI GGCC 5 cut(s) 182, 429, 440, 671, 848
BtgI CCRYGG 3 cut(s) 346, 401, 765
BtsCI GGATG 2 cut(s) 717, 820
BtsIMutI CAGTG 1 cut(s) 800
Cac8I GCNNGC 2 cut(s) 180, 559
CfoI GCGC 4 cut(s) 345, 455, 516, 550
Cfr13I GGNCC 9 cut(s) 140, 181, 406, 427, 433, 438, 465, 484, 847
CpoI CGGWCCG 1 cut(s) 465
CseI GACGC 3 cut(s) 269, 508, 574
CspI CGGWCCG 1 cut(s) 465
CviAII CATG 3 cut(s) 175, 340, 736
DdeI CTNAG 1 cut(s) 867
DinI GGCGCC 1 cut(s) 454
DpnI GATC 4 cut(s) 383, 471, 612, 759
DpnII GATC 4 cut(s) 381, 469, 610, 757
DraIII CACNNNGTG 1 cut(s) 493
EciI GGCGGA 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 375
Eco31I GGTCTC 2 cut(s) 518, 634
Eco47I GGWCC 5 cut(s) 140, 406, 433, 465, 484
Eco81I CCTNAGG 1 cut(s) 867
Eco88I CYCGRG 1 cut(s) 473
EcoO109I RGGNCCY 3 cut(s) 140, 406, 847
EcoRII CCWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 375
EgeI GGCGCC 1 cut(s) 454
EheI GGCGCC 1 cut(s) 454
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 3 cut(s) 178, 343, 739
FaiI YATR 8 cut(s) 93, 146, 176, 226, 341, 642, 737, 831
FaqI GGGAC 2 cut(s) 419, 763
FatI CATG 3 cut(s) 174, 339, 735
FauI CCCGC 3 cut(s) 383, 404, 417
Fnu4HI GCNGC 1 cut(s) 517
FokI GGATG 2 cut(s) 704, 827
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 517
FspBI CTAG 1 cut(s) 558
GlaI GCGC 4 cut(s) 344, 454, 515, 549
GluI GCNGC 1 cut(s) 517
GsaI CCCAGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 456
HaeIII GGCC 5 cut(s) 182, 429, 440, 671, 848
HapII CCGG 5 cut(s) 267, 430, 436, 463, 482
HgaI GACGC 3 cut(s) 269, 508, 574
HhaI GCGC 4 cut(s) 345, 455, 516, 550
Hin1I GRCGYC 3 cut(s) 261, 453, 566
Hin1II CATG 3 cut(s) 178, 343, 739
Hin6I GCGC 4 cut(s) 343, 453, 514, 548
HinP1I GCGC 4 cut(s) 343, 453, 514, 548
HinfI GANTC 1 cut(s) 296
HpaII CCGG 5 cut(s) 267, 430, 436, 463, 482
HphI GGTGA 2 cut(s) 535, 692
Hpy166II GTNNAC 3 cut(s) 487, 596, 778
Hpy188I TCNGA 2 cut(s) 301, 469
Hpy188III TCNNGA 1 cut(s) 523
Hpy8I GTNNAC 3 cut(s) 487, 596, 778
Hpy99I CGWCG 5 cut(s) 335, 338, 524, 574, 611
HpyAV CCTTC 5 cut(s) 194, 200, 250, 451, 740
HpyCH4III ACNGT 4 cut(s) 590, 754, 766, 896
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 5 cut(s) 108, 115, 447, 818, 854
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 511, 554
HpyF3I CTNAG 1 cut(s) 867
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 3 cut(s) 261, 453, 566
Hsp92II CATG 3 cut(s) 178, 343, 739
HspAI GCGC 4 cut(s) 343, 453, 514, 548
KasI GGCGCC 1 cut(s) 452
KflI GGGWCCC 1 cut(s) 406
Kzo9I GATC 4 cut(s) 381, 469, 610, 757
LmnI GCTCC 3 cut(s) 465, 694, 885
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 3 cut(s) 366, 645, 805
MaeI CTAG 1 cut(s) 558
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 541, 886
MalI GATC 4 cut(s) 383, 471, 612, 759
MboI GATC 4 cut(s) 381, 469, 610, 757
MboII GAAGA 2 cut(s) 7, 23
MfeI CAATTG 1 cut(s) 633
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 4 cut(s) 147, 633, 703, 874
Mly113I GGCGCC 1 cut(s) 453
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 2 cut(s) 324, 555
MseI TTAA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 378
MspI CCGG 5 cut(s) 267, 430, 436, 463, 482
MspR9I CCNGG 4 cut(s) 431, 437, 482, 536
MunI CAATTG 1 cut(s) 633
MvaI CCWGG 1 cut(s) 536
MvnI CGCG 2 cut(s) 492, 548
MwoI GCNNNNNNNGC 3 cut(s) 260, 511, 554
NarI GGCGCC 1 cut(s) 453
NciI CCSGG 3 cut(s) 431, 437, 482
NdeII GATC 4 cut(s) 381, 469, 610, 757
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 3 cut(s) 178, 343, 739
NlaIV GGNNCC 5 cut(s) 407, 408, 434, 454, 479
NmuCI GTSAC 2 cut(s) 541, 886
PcsI WCGNNNNNNNCGW 3 cut(s) 366, 516, 528
PflFI GACNNNGTC 1 cut(s) 568
PflMI CCANNNNNTGG 1 cut(s) 698
PkrI GCNGC 1 cut(s) 518
PleI GAGTC 1 cut(s) 290
PluTI GGCGCC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 290
PpuMI RGGWCCY 2 cut(s) 140, 406
PshAI GACNNNNGTC 1 cut(s) 530
Psp5II RGGWCCY 2 cut(s) 140, 406
Psp6I CCWGG 1 cut(s) 534
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 5 cut(s) 407, 408, 434, 454, 479
PspPI GGNCC 9 cut(s) 140, 181, 406, 427, 433, 438, 465, 484, 847
PspPPI RGGWCCY 2 cut(s) 140, 406
PsyI GACNNNGTC 1 cut(s) 568
Rsr2I CGGWCCG 1 cut(s) 465
RsrII CGGWCCG 1 cut(s) 465
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 517
Sau3AI GATC 4 cut(s) 381, 469, 610, 757
Sau96I GGNCC 9 cut(s) 140, 181, 406, 427, 433, 438, 465, 484, 847
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 4 cut(s) 431, 437, 482, 536
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 3 cut(s) 366, 645, 805
SfoI GGCGCC 1 cut(s) 454
SinI GGWCC 5 cut(s) 140, 406, 433, 465, 484
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 4 cut(s) 147, 633, 703, 874
SspDI GGCGCC 1 cut(s) 452
SspMI CTAG 1 cut(s) 558
StyD4I CCNGG 4 cut(s) 429, 435, 480, 534
TaaI ACNGT 4 cut(s) 590, 754, 766, 896
TaiI ACGT 1 cut(s) 333
TaqI TCGA 4 cut(s) 360, 369, 522, 609
TasI AATT 4 cut(s) 147, 633, 703, 874
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 800
TseFI GTSAC 2 cut(s) 541, 886
TseI GCWGC 1 cut(s) 516
Tsp45I GTSAC 2 cut(s) 541, 886
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 800
Tth111I GACNNNGTC 1 cut(s) 568
Van91I CCANNNNNTGG 1 cut(s) 698
VpaK11BI GGWCC 5 cut(s) 140, 406, 433, 465, 484
XapI RAATTY 1 cut(s) 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.