Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006463.1

Orthogroup ID

OG0006635

Physical Location & Seq

Genomic Coordinates Reverse (-)

93267 .. 94944

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006463.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggacgcctccggcggtcaaacccagccccaccgcaacgactccaaccattcctccgcccaccaccaccaaaacgtcgtcgtcatgcgccacggcgaccgcatcgacaacttcgagccccgctggatcaaaaacgccgcccgaccgtgggacccgcctctcgtggaggagggccgggtccgggccttctgcacgggcgcgaagctccggtccgatctcgggttcccggtccaccgcgtgttcgtgtcgccgttcgtgcgctgcgtcgagaccgccgtccaggtcgtcaccgcgctctccgctagcgagacgccgtcgttggacaaatacgacagtcgtaaacccctccccgtcgatccctccaagctcaaggtctcaattgaatatggcttgtgcgagatgctaaatagagaggccattcgtggtgatgtagctccaaaagatggaaattggggtttcaacatcccagaacttgaagccatgttcccagaagggacggtggatcgcaccgtggaaagagtttacaaagagttgccccagtggggagagagtgtgatggatgcacggtcaaggtatgctaatgtggttcaggcccttgcagataaacaccctatggaaaatttgctccttgtcactcacggtgaaggagtcggtgcctcaattagttcattcctggagggtgccacagtatatgaagcagagtactgtgcatattcagaactacgaaggcccatcttctgcaatgaccagtcatcgactgctggaaagtttgaggtattgacaaatcttggtcagactggtatcagttactctcttgcattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

274

Amino Acids

30.44

Weight (kDa)

5.74

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60415 AT3G60420 AT3G60440 AT3G60440 AT3G60450 AT3G60450 AT4G07455
fragaria_vesca	FvH4_7g09660 FvH4_7g09660 FvH4_7g09660
malus_domestica	MD00G1058700.v1.1 MD07G1100900.v1.1
prunus_persica	Prupe.2G124000_v2.0.a1
pyrus_communis	pycom02g18150 pycom07g08250
rosa_chinensis	RchiOBHm_Chr1g0346561
rosa_laevigata	RLG00000028793
rosa_multiflora	Rmu_sc0006463.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308260 Rroxscaffold_4G00308270
rosa_rugosa	Rorug01G0181100
rosa_samantha	Rh1AG200300 Rh1BG166600 Rh1CG185300 Rh1DG197400
rosa_wichuraiana	Rw1G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	653, 680
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccII	CGCG	3 cut(s)	200, 237, 293
AclWI	GGATC	3 cut(s)	134, 350, 510
AcsI	RAATTY	1 cut(s)	619
AcyI	GRCGYC	2 cut(s)	6, 311
AdeI	CACNNNGTG	1 cut(s)	238
AfaI	GTAC	1 cut(s)	704
AfiI	CCNNNNNNNGG	6 cut(s)	147, 148, 181, 219, 443, 542
AgsI	TTSAA	3 cut(s)	383, 460, 476
AjnI	CCWGG	2 cut(s)	279, 672
AluBI	AGCT	3 cut(s)	205, 367, 434
AluI	AGCT	3 cut(s)	205, 367, 434
Alw26I	GTCTC	3 cut(s)	263, 302, 379
AlwI	GGATC	3 cut(s)	134, 350, 510
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	5 cut(s)	172, 183, 414, 591, 728
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	619
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	4 cut(s)	90, 200, 261, 295
AspS9I	GGNCC	8 cut(s)	151, 172, 178, 183, 210, 229, 592, 729
AsuC2I	CCSGG	3 cut(s)	176, 182, 227
AsuHPI	GGTGA	3 cut(s)	280, 437, 653
AsuNHI	GCTAGC	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	4 cut(s)	151, 178, 210, 229
BanI	GGYRCC	2 cut(s)	653, 680
BanII	GRGCYC	1 cut(s)	120
BauI	CACGAG	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	3 cut(s)	437, 550, 740
BceAI	ACGGC	4 cut(s)	109, 235, 260, 298
BciT130I	CCWGG	2 cut(s)	281, 674
BcnI	CCSGG	3 cut(s)	176, 182, 227
BcoDI	GTCTC	3 cut(s)	263, 302, 379
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	2 cut(s)	138, 262
BlsI	GCNGC	2 cut(s)	139, 263
BmcAI	AGTACT	1 cut(s)	704
Bme1390I	CCNGG	5 cut(s)	176, 182, 227, 281, 674
Bme18I	GGWCC	4 cut(s)	151, 178, 210, 229
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	8 cut(s)	151, 172, 178, 183, 210, 229, 592, 729
BmiI	GGNNCC	6 cut(s)	152, 153, 179, 224, 655, 682
BmrFI	CCNGG	5 cut(s)	176, 182, 227, 281, 674
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	3 cut(s)	111, 390, 550
BmtI	GCTAGC	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	532
BoxI	GACNNNNGTC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	3 cut(s)	176, 182, 227
BsaHI	GRCGYC	2 cut(s)	6, 311
BsaI	GGTCTC	2 cut(s)	263, 379
BsaJI	CCNNGG	3 cut(s)	91, 146, 510
BsaWI	WCCGGW	1 cut(s)	207
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 537, 567
Bsc4I	CCNNNNNNNGG	6 cut(s)	147, 148, 181, 219, 443, 542
Bse1I	ACTGG	3 cut(s)	538, 748, 802
Bse3DI	GCAATG	1 cut(s)	748
BseBI	CCWGG	2 cut(s)	281, 674
BseDI	CCNNGG	3 cut(s)	91, 146, 510
BseGI	GGATG	2 cut(s)	462, 565
BseLI	CCNNNNNNNGG	6 cut(s)	147, 148, 181, 219, 443, 542
BseMI	GCAATG	1 cut(s)	748
BseNI	ACTGG	3 cut(s)	538, 748, 802
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	175
Bsh1236I	CGCG	3 cut(s)	200, 237, 293
Bsh1285I	CGRYCG	2 cut(s)	100, 146
BshFI	GGCC	5 cut(s)	174, 185, 416, 593, 730
BshNI	GGYRCC	2 cut(s)	653, 680
BsiEI	CGRYCG	2 cut(s)	100, 146
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	5 cut(s)	12, 175, 181, 208, 227
BslFI	GGGAC	2 cut(s)	164, 508
BslI	CCNNNNNNNGG	6 cut(s)	147, 148, 181, 219, 443, 542
BsmAI	GTCTC	3 cut(s)	263, 302, 379
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	2 cut(s)	164, 508
BsnI	GGCC	5 cut(s)	174, 185, 416, 593, 730
Bso31I	GGTCTC	2 cut(s)	263, 379
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	126, 214, 355, 502
BspANI	GGCC	5 cut(s)	174, 185, 416, 593, 730
BspFNI	CGCG	3 cut(s)	200, 237, 293
BspLI	GGNNCC	6 cut(s)	152, 153, 179, 224, 655, 682
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	134, 350, 510
BspT107I	GGYRCC	2 cut(s)	653, 680
BspTNI	GGTCTC	2 cut(s)	263, 379
BsrDI	GCAATG	1 cut(s)	748
BsrI	ACTGG	3 cut(s)	538, 748, 802
BssECI	CCNNGG	3 cut(s)	91, 146, 510
BssMI	GATC	4 cut(s)	126, 214, 355, 502
BssNI	GRCGYC	2 cut(s)	6, 311
BssSI	CACGAG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	2 cut(s)	281, 674
Bst4CI	ACNGT	8 cut(s)	147, 335, 499, 511, 567, 641, 688, 707
BstACI	GRCGYC	2 cut(s)	6, 311
BstC8I	GCNNGC	1 cut(s)	304
BstDSI	CCRYGG	3 cut(s)	91, 146, 510
BstF5I	GGATG	2 cut(s)	462, 565
BstFNI	CGCG	3 cut(s)	200, 237, 293
BstHHI	GCGC	4 cut(s)	90, 200, 261, 295
BstKTI	GATC	4 cut(s)	129, 217, 358, 505
BstMAI	GTCTC	3 cut(s)	263, 302, 379
BstMBI	GATC	4 cut(s)	126, 214, 355, 502
BstMCI	CGRYCG	2 cut(s)	100, 146
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 299
BstNI	CCWGG	2 cut(s)	281, 674
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	5 cut(s)	174, 180, 225, 279, 672
BstUI	CGCG	3 cut(s)	200, 237, 293
BstV1I	GCAGC	1 cut(s)	248
BsuRI	GGCC	5 cut(s)	174, 185, 416, 593, 730
BtgI	CCRYGG	3 cut(s)	91, 146, 510
BtsCI	GGATG	2 cut(s)	462, 565
BtsIMutI	CAGTG	1 cut(s)	545
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	4 cut(s)	90, 200, 261, 295
Cfr13I	GGNCC	8 cut(s)	151, 172, 178, 183, 210, 229, 592, 729
CpoI	CGGWCCG	1 cut(s)	210
CseI	GACGC	3 cut(s)	14, 253, 319
Csp6I	GTAC	1 cut(s)	703
CspI	CGGWCCG	1 cut(s)	210
CviAII	CATG	2 cut(s)	85, 481
CviQI	GTAC	1 cut(s)	703
DpnI	GATC	4 cut(s)	128, 216, 357, 504
DpnII	GATC	4 cut(s)	126, 214, 355, 502
DraIII	CACNNNGTG	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	120
Eco31I	GGTCTC	2 cut(s)	263, 379
Eco47I	GGWCC	4 cut(s)	151, 178, 210, 229
Eco88I	CYCGRG	1 cut(s)	218
EcoO109I	RGGNCCY	2 cut(s)	151, 592
EcoRII	CCWGG	2 cut(s)	279, 672
EcoT38I	GRGCYC	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	2 cut(s)	88, 484
FaiI	YATR	8 cut(s)	86, 387, 482, 576, 614, 691, 693, 712
FaqI	GGGAC	2 cut(s)	164, 508
FatI	CATG	2 cut(s)	84, 480
FauI	CCCGC	2 cut(s)	128, 162
Fnu4HI	GCNGC	2 cut(s)	138, 262
FokI	GGATG	2 cut(s)	449, 572
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	138, 262
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	4 cut(s)	89, 199, 260, 294
GluI	GCNGC	2 cut(s)	138, 262
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	5 cut(s)	174, 185, 416, 593, 730
HapII	CCGG	5 cut(s)	12, 175, 181, 208, 227
HgaI	GACGC	3 cut(s)	14, 253, 319
HhaI	GCGC	4 cut(s)	90, 200, 261, 295
Hin1I	GRCGYC	2 cut(s)	6, 311
Hin1II	CATG	2 cut(s)	88, 484
Hin6I	GCGC	4 cut(s)	88, 198, 259, 293
HinP1I	GCGC	4 cut(s)	88, 198, 259, 293
HinfI	GANTC	2 cut(s)	41, 648
HpaII	CCGG	5 cut(s)	12, 175, 181, 208, 227
HphI	GGTGA	3 cut(s)	280, 437, 653
Hpy166II	GTNNAC	3 cut(s)	232, 341, 523
Hpy188I	TCNGA	3 cut(s)	214, 718, 795
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	3 cut(s)	232, 341, 523
Hpy99I	CGWCG	5 cut(s)	80, 83, 269, 319, 356
HpyAV	CCTTC	4 cut(s)	196, 485, 638, 720
HpyCH4III	ACNGT	8 cut(s)	147, 335, 499, 511, 567, 641, 688, 707
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	6 cut(s)	192, 563, 599, 710, 741, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 299
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	2 cut(s)	6, 311
Hsp92II	CATG	2 cut(s)	88, 484
HspAI	GCGC	4 cut(s)	88, 198, 259, 293
KflI	GGGWCCC	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	126, 214, 355, 502
LmnI	GCTCC	3 cut(s)	210, 439, 630
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	3 cut(s)	111, 390, 550
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	3 cut(s)	286, 631, 806
MalI	GATC	4 cut(s)	128, 216, 357, 504
MboI	GATC	4 cut(s)	126, 214, 355, 502
MboII	GAAGA	1 cut(s)	727
MfeI	CAATTG	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	4 cut(s)	378, 448, 619, 660
MlyI	GAGTC	2 cut(s)	35, 657
MmeI	TCCRAC	2 cut(s)	69, 300
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	5 cut(s)	12, 175, 181, 208, 227
MspR9I	CCNGG	5 cut(s)	176, 182, 227, 281, 674
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	2 cut(s)	281, 674
MvnI	CGCG	3 cut(s)	200, 237, 293
MwoI	GCNNNNNNNGC	2 cut(s)	256, 299
NciI	CCSGG	3 cut(s)	176, 182, 227
NdeII	GATC	4 cut(s)	126, 214, 355, 502
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	2 cut(s)	88, 484
NlaIV	GGNNCC	6 cut(s)	152, 153, 179, 224, 655, 682
NmuCI	GTSAC	2 cut(s)	286, 631
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 261, 273
PflFI	GACNNNGTC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	443
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	2 cut(s)	139, 263
PleI	GAGTC	2 cut(s)	35, 656
PpsI	GAGTC	2 cut(s)	35, 656
PpuMI	RGGWCCY	1 cut(s)	151
PshAI	GACNNNNGTC	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	279, 672
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	279, 672
PspN4I	GGNNCC	6 cut(s)	152, 153, 179, 224, 655, 682
PspPI	GGNCC	8 cut(s)	151, 172, 178, 183, 210, 229, 592, 729
PspPPI	RGGWCCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	313
RsaI	GTAC	1 cut(s)	704
RsaNI	GTAC	1 cut(s)	703
Rsr2I	CGGWCCG	1 cut(s)	210
RsrII	CGGWCCG	1 cut(s)	210
SatI	GCNGC	2 cut(s)	138, 262
Sau3AI	GATC	4 cut(s)	126, 214, 355, 502
Sau96I	GGNCC	8 cut(s)	151, 172, 178, 183, 210, 229, 592, 729
ScaI	AGTACT	1 cut(s)	704
SchI	GAGTC	2 cut(s)	35, 657
ScrFI	CCNGG	5 cut(s)	176, 182, 227, 281, 674
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	8 cut(s)	78, 207, 285, 369, 375, 436, 575, 777
SfaNI	GCATC	3 cut(s)	111, 390, 550
SinI	GGWCC	4 cut(s)	151, 178, 210, 229
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	4 cut(s)	378, 448, 619, 660
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	5 cut(s)	174, 180, 225, 279, 672
TaaI	ACNGT	8 cut(s)	147, 335, 499, 511, 567, 641, 688, 707
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	5 cut(s)	105, 114, 267, 354, 755
TasI	AATT	4 cut(s)	378, 448, 619, 660
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	1 cut(s)	140
TscAI	CASTG	1 cut(s)	545
TseFI	GTSAC	2 cut(s)	286, 631
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	2 cut(s)	286, 631
TspDTI	ATGAA	2 cut(s)	657, 708
TspRI	CASTG	1 cut(s)	545
Tth111I	GACNNNGTC	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	443
VpaK11BI	GGWCC	4 cut(s)	151, 178, 210, 229
XapI	RAATTY	1 cut(s)	619
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.