Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006635

Physical Location & Seq

Genomic Coordinates Forward (+)

22337791 .. 22339520

Gene Structure 1730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTATACAACAATCACTTCCAACGTAGTCTCAAAGGTCACAGCAGCAGCAGCAACAATCAGAGCAACAATGGAGTCTGCTAAATCAAAAAATCCCGATAGCTACCAAAATATCTTGATGATGCGTCACGGTGATCGCATTGACAAAATCGATCCACTCTGGCTTGATACAGCTGCGAGACCTTGGGATCCTCCTCTCGTTCAAGACGGTATGGTTCGTGCGTTTCAAACTGGTCAACGGATTCGATCTCAGATCCAATTTCCGATTCACCGTGTCTTCGTCTCTCCTTTTATCCGATGTATACAGACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTCGATTTCGATCCTAACGCTACTTCGTCCAAAGACGTCACTTCAATCGATAAATATAAGCTTAAGGTTTCCATTGAATTTGGTTTGAGTGAGATGCTGAATTCAATTGCTATTAAGCCTGAGATTGCTCCCAAAGATGGGAAATTCGATTTCATGATTTCAGAACTTGAAGCGATTTTTCCTGATGGAATGGTTGATCATAGTGTAGATCCTGTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGAAGGCTGCACAGATAGATTTCTTAGTTTGATAAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCTTGGTCACTCACGGGGAAGGAGTAAGGACTACATTTGCAACCTTTAAAGGCGTACATGTGTACGACGTAGAGTATTGTGGTTGTGCTGAATTGAGAAGACAGGTGTCGAGTAAAGATGGGTCTACTAAAGCTGGAGACTTTGAGGTGATCACAAGTCTTAGTCAATGTGGAATCAAGTACCATTCCTTGAGCACCACAGACCAAACTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

291

Amino Acids

32.34

Weight (kDa)

5.44

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60415 AT3G60420 AT3G60440 AT3G60440 AT3G60450 AT3G60450 AT4G07455
fragaria_vesca	FvH4_7g09660 FvH4_7g09660 FvH4_7g09660
malus_domestica	MD00G1058700.v1.1 MD07G1100900.v1.1
prunus_persica	Prupe.2G124000_v2.0.a1
pyrus_communis	pycom02g18150 pycom07g08250
rosa_chinensis	RchiOBHm_Chr1g0346561
rosa_laevigata	RLG00000028793
rosa_multiflora	Rmu_sc0006463.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308260 Rroxscaffold_4G00308270
rosa_rugosa	Rorug01G0181100
rosa_samantha	Rh1AG200300 Rh1BG166600 Rh1CG185300 Rh1DG197400
rosa_wichuraiana	Rw1G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AatII	GACGTC	1 cut(s)	378
AccI	GTMKAC	3 cut(s)	5, 301, 782
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	6 cut(s)	146, 182, 195, 247, 344, 542
AcsI	RAATTY	3 cut(s)	416, 439, 482
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	3 cut(s)	714, 722, 839
AfiI	CCNNNNNNNGG	2 cut(s)	476, 477
AflII	CTTAAG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	715
AgsI	TTSAA	6 cut(s)	203, 227, 384, 416, 444, 509
AjuI	GAANNNNNNNTTGG	4 cut(s)	249, 281, 644, 676
AluBI	AGCT	4 cut(s)	102, 173, 400, 791
AluI	AGCT	4 cut(s)	102, 173, 400, 791
Alw21I	GWGCWC	1 cut(s)	854
Alw26I	GTCTC	5 cut(s)	34, 172, 286, 575, 789
AlwI	GGATC	6 cut(s)	146, 182, 195, 247, 344, 542
ApeKI	GCWGC	6 cut(s)	44, 47, 50, 173, 326, 594
ApoI	RAATTY	3 cut(s)	416, 439, 482
AsuHPI	GGTGA	3 cut(s)	143, 260, 817
BamHI	GGATCC	1 cut(s)	187
BbsI	GAAGAC	2 cut(s)	268, 763
Bbv12I	GWGCWC	1 cut(s)	854
BbvI	GCAGC	6 cut(s)	56, 59, 62, 160, 313, 581
BccI	CCATC	3 cut(s)	470, 518, 770
BceAI	ACGGC	1 cut(s)	323
BciVI	GTATCC	1 cut(s)	651
BclI	TGATCA	2 cut(s)	535, 807
BcoDI	GTCTC	5 cut(s)	34, 172, 286, 575, 789
BfrI	CTTAAG	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	6 cut(s)	45, 48, 51, 174, 327, 595
BlsI	GCNGC	6 cut(s)	46, 49, 52, 175, 328, 596
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	3 cut(s)	111, 423, 555
BoxI	GACNNNNGTC	1 cut(s)	763
BpiI	GAAGAC	2 cut(s)	268, 763
BpmI	CTGGAG	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	868
Bsa29I	ATCGAT	2 cut(s)	150, 387
BsaBI	GATNNNNATC	2 cut(s)	348, 639
BsaHI	GRCGYC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 477
Bse1I	ACTGG	1 cut(s)	235
Bse8I	GATNNNNATC	2 cut(s)	348, 639
BseCI	ATCGAT	2 cut(s)	150, 387
BseDI	CCNNGG	1 cut(s)	182
BseJI	GATNNNNATC	2 cut(s)	348, 639
BseLI	CCNNNNNNNGG	2 cut(s)	476, 477
BseMII	CTCAG	2 cut(s)	263, 450
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	6 cut(s)	56, 59, 62, 160, 313, 581
BsgI	GTGCAG	1 cut(s)	580
BshVI	ATCGAT	2 cut(s)	150, 387
BsiHKAI	GWGCWC	1 cut(s)	854
BslI	CCNNNNNNNGG	2 cut(s)	476, 477
BsmAI	GTCTC	5 cut(s)	34, 172, 286, 575, 789
BsmBI	CGTCTC	1 cut(s)	286
Bso31I	GGTCTC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	854
Bsp143I	GATC	9 cut(s)	133, 151, 187, 245, 252, 349, 535, 547, 807
BspACI	CCGC	1 cut(s)	336
BspCNI	CTCAG	2 cut(s)	262, 451
BspDI	ATCGAT	2 cut(s)	150, 387
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	6 cut(s)	146, 182, 195, 247, 344, 542
BspTI	CTTAAG	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	9 cut(s)	133, 151, 187, 245, 252, 349, 535, 547, 807
BssNAI	GTATAC	2 cut(s)	6, 302
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	182
Bst1107I	GTATAC	2 cut(s)	6, 302
Bst4CI	ACNGT	4 cut(s)	131, 209, 272, 586
Bst6I	CTCTTC	1 cut(s)	573
BstACI	GRCGYC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	401
BstDEI	CTNAG	4 cut(s)	249, 459, 611, 818
BstKTI	GATC	9 cut(s)	136, 154, 190, 248, 255, 352, 538, 550, 810
BstMAI	GTCTC	5 cut(s)	34, 172, 286, 575, 789
BstMBI	GATC	9 cut(s)	133, 151, 187, 245, 252, 349, 535, 547, 807
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 335
BstNSI	RCATGY	1 cut(s)	719
BstPAI	GACNNNNGTC	1 cut(s)	763
BstV1I	GCAGC	6 cut(s)	56, 59, 62, 160, 313, 581
BstV2I	GAAGAC	2 cut(s)	268, 763
BstX2I	RGATCY	3 cut(s)	187, 252, 547
BstYI	RGATCY	3 cut(s)	187, 252, 547
BstZ17I	GTATAC	2 cut(s)	6, 302
Bsu15I	ATCGAT	2 cut(s)	150, 387
BsuI	GTATCC	1 cut(s)	651
BsuTUI	ATCGAT	2 cut(s)	150, 387
BtgZI	GCGATG	1 cut(s)	307
CciI	TCATGA	1 cut(s)	492
ClaI	ATCGAT	2 cut(s)	150, 387
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	713, 721, 838
CviAII	CATG	2 cut(s)	493, 716
CviJI	RGCY	7 cut(s)	102, 163, 173, 400, 457, 594, 791
CviKI_1	RGCY	7 cut(s)	102, 163, 173, 400, 457, 594, 791
CviQI	GTAC	3 cut(s)	713, 721, 838
DdeI	CTNAG	4 cut(s)	249, 459, 611, 818
DpnI	GATC	9 cut(s)	135, 153, 189, 247, 254, 351, 537, 549, 809
DpnII	GATC	9 cut(s)	133, 151, 187, 245, 252, 349, 535, 547, 807
DraI	TTTAAA	1 cut(s)	706
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	630
EcoRI	GAATTC	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	2 cut(s)	496, 719
FaiI	YATR	8 cut(s)	6, 212, 302, 396, 494, 540, 558, 717
FatI	CATG	2 cut(s)	492, 715
FbaI	TGATCA	2 cut(s)	535, 807
FblI	GTMKAC	3 cut(s)	5, 301, 782
Fnu4HI	GCNGC	6 cut(s)	45, 48, 51, 174, 327, 595
Fsp4HI	GCNGC	6 cut(s)	45, 48, 51, 174, 327, 595
GluI	GCNGC	6 cut(s)	45, 48, 51, 174, 327, 595
GsuI	CTGGAG	1 cut(s)	813
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	2 cut(s)	496, 719
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	5 cut(s)	74, 241, 265, 625, 831
HphI	GGTGA	3 cut(s)	143, 260, 817
Hpy166II	GTNNAC	5 cut(s)	6, 236, 302, 721, 783
Hpy188I	TCNGA	7 cut(s)	62, 252, 264, 296, 316, 502, 649
Hpy188III	TCNNGA	5 cut(s)	95, 115, 203, 493, 521
Hpy8I	GTNNAC	5 cut(s)	6, 236, 302, 721, 783
Hpy99I	CGWCG	2 cut(s)	344, 728
HpyAV	CCTTC	3 cut(s)	584, 654, 671
HpyCH4III	ACNGT	4 cut(s)	131, 209, 272, 586
HpyCH4IV	ACGT	3 cut(s)	24, 375, 726
HpyCH4V	TGCA	2 cut(s)	597, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 335
HpyF3I	CTNAG	4 cut(s)	249, 459, 611, 818
HpySE526I	ACGT	3 cut(s)	24, 375, 726
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	2 cut(s)	496, 719
Ksp22I	TGATCA	2 cut(s)	535, 807
Kzo9I	GATC	9 cut(s)	133, 151, 187, 245, 252, 349, 535, 547, 807
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	7 cut(s)	145, 216, 471, 534, 564, 746, 777
Lsp1109I	GCAGC	6 cut(s)	56, 59, 62, 160, 313, 581
LweI	GCATC	3 cut(s)	111, 423, 555
MaeII	ACGT	3 cut(s)	24, 375, 726
MaeIII	GTNAC	4 cut(s)	37, 125, 376, 664
MalI	GATC	9 cut(s)	135, 153, 189, 247, 254, 351, 537, 549, 809
MboI	GATC	9 cut(s)	133, 151, 187, 245, 252, 349, 535, 547, 807
MboII	GAAGA	3 cut(s)	268, 590, 768
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	3 cut(s)	187, 252, 547
MhlI	GDGCHC	1 cut(s)	854
MluCI	AATT	6 cut(s)	257, 416, 439, 444, 482, 749
MlyI	GAGTC	2 cut(s)	83, 619
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	3 cut(s)	201, 204, 796
MseI	TTAA	4 cut(s)	402, 453, 705, 874
MspA1I	CMGCKG	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	50, 335
NdeII	GATC	9 cut(s)	133, 151, 187, 245, 252, 349, 535, 547, 807
NlaIII	CATG	2 cut(s)	496, 719
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	4 cut(s)	37, 125, 376, 664
NspI	RCATGY	1 cut(s)	719
PagI	TCATGA	1 cut(s)	492
PciI	ACATGT	1 cut(s)	715
PfeI	GAWTC	3 cut(s)	241, 265, 831
PkrI	GCNGC	6 cut(s)	46, 49, 52, 175, 328, 596
PleI	GAGTC	2 cut(s)	82, 619
PpsI	GAGTC	2 cut(s)	82, 619
PscI	ACATGT	1 cut(s)	715
PshAI	GACNNNNGTC	1 cut(s)	763
PsiI	TTATAA	1 cut(s)	558
PspN4I	GGNNCC	1 cut(s)	189
PsuI	RGATCY	3 cut(s)	187, 252, 547
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	3 cut(s)	714, 722, 839
RsaNI	GTAC	3 cut(s)	713, 721, 838
SaqAI	TTAA	4 cut(s)	402, 453, 705, 874
SatI	GCNGC	6 cut(s)	45, 48, 51, 174, 327, 595
Sau3AI	GATC	9 cut(s)	133, 151, 187, 245, 252, 349, 535, 547, 807
SchI	GAGTC	2 cut(s)	83, 619
SduI	GDGCHC	1 cut(s)	854
SfaNI	GCATC	3 cut(s)	111, 423, 555
SmlI	CTYRAG	2 cut(s)	401, 847
SmoI	CTYRAG	2 cut(s)	401, 847
Sse9I	AATT	6 cut(s)	257, 416, 439, 444, 482, 749
SsiI	CCGC	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	4 cut(s)	131, 209, 272, 586
TaiI	ACGT	3 cut(s)	27, 378, 729
TaqI	TCGA	7 cut(s)	150, 244, 342, 348, 387, 486, 767
TasI	AATT	6 cut(s)	257, 416, 439, 444, 482, 749
TfiI	GAWTC	3 cut(s)	241, 265, 831
Tru1I	TTAA	4 cut(s)	402, 453, 705, 874
Tru9I	TTAA	4 cut(s)	402, 453, 705, 874
TseFI	GTSAC	4 cut(s)	37, 125, 376, 664
TseI	GCWGC	6 cut(s)	44, 47, 50, 173, 326, 594
Tsp45I	GTSAC	4 cut(s)	37, 125, 376, 664
TspDTI	ATGAA	1 cut(s)	481
TspGWI	ACGGA	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	401
XapI	RAATTY	3 cut(s)	416, 439, 482
XceI	RCATGY	1 cut(s)	719
XmiI	GTMKAC	3 cut(s)	5, 301, 782
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.