FvH4_7g09660
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006635
Physical Location & Seq
Forward (+)
9261015 .. 9263353
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09660.t3

Sequence Viewer

Length: 888 bp
ATGCTGTCCCTTCTTCCCTCTCGCCTACCCTCAACAATTCAAACAACCAAAACCAAAACCCTCCTCCTCTGCTCATCACATTTCCTCTCCCCAATGGCCCAGCTCATCCGCACCGAACCCAACCACTCCTCCACCCACCACCACCAAAACGTCGTCGTCATGCGCCACGGCGACCGCATCGACAACTTCGAGCCCCGCTGGATCAAAAACGCCGCTCGTCCCTGGGACCCACCTCTCGTCGAGGAGGGCCGCGTCCGCGCCTTCTGCACCGGCGCCAAGCTCCGGTCCGATCTCGGCTTCCCCGTTCACCGTGTCTTCGTTTCTCCCTTCATCCGCTGCGTCGAGACCGCCGTCCAGGTCGTCACCGCGCTCGCCGCTATCGAGACGCCGTCGTTGGGAAAATACGGTCAACCCCTCCCTGTTGATCCCTCCAAGCTAAAGGTGTCAATTGAATATGGCTTGTGTGAGATGCTAAATAAAGAGGCCATTCGAGGTGATGTAGCTCCAAAAGATGGGAATTGGGGTTTCAACATCCCAGAACTTGAAGCCAAGTTCCCAGAAGGTATGGTGGATCGCACCGTGGAAAGAGTCTACAAAGAGTTGCCCCAGTGGGGAGAGAGTGTGATGGATGCAAGGTCAAGGTATGCGAATGTTGTTCAGGCCCTTGCAGATAAATATCCTACTGAAAATTTGCTCCTTGTCACTCACGGTGAAGGAGTCGGAACCTCGATTACTGCGTTCCTGGAGGGAGCCACAGTATATGAAGCAGAGTACTGTGCGTATTCAAAACTACGAAGGCCCATCAATGACCAGTCACCGACTGCTGGAAAGTTTGAGGTATTGACAAATATTGGTCAGACCGGTCTCAGTTACTCTCTTTCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

296

Amino Acids

32.79

Weight (kDa)

7.09

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 512
AccBSI CCGCTC 1 cut(s) 215
AccI GTMKAC 1 cut(s) 591
AccII CGCG 3 cut(s) 252, 258, 368
AclWI GGATC 3 cut(s) 209, 419, 579
AcsI RAATTY 1 cut(s) 688
AcyI GRCGYC 2 cut(s) 273, 386
AfaI GTAC 1 cut(s) 773
AfiI CCNNNNNNNGG 5 cut(s) 282, 395, 512, 611, 824
AgeI ACCGGT 1 cut(s) 860
AgsI TTSAA 5 cut(s) 41, 452, 529, 545, 786
AjnI CCWGG 3 cut(s) 221, 354, 741
AluBI AGCT 4 cut(s) 103, 280, 436, 503
AluI AGCT 4 cut(s) 103, 280, 436, 503
Alw26I GTCTC 3 cut(s) 338, 377, 869
AlwI GGATC 3 cut(s) 209, 419, 579
AoxI GGCC 5 cut(s) 96, 247, 483, 660, 797
ApeKI GCWGC 1 cut(s) 336
ApoI RAATTY 1 cut(s) 688
AsiGI ACCGGT 1 cut(s) 860
AspLEI GCGC 4 cut(s) 165, 260, 275, 370
AspS9I GGNCC 6 cut(s) 97, 226, 247, 285, 661, 798
AsuHPI GGTGA 5 cut(s) 299, 355, 506, 722, 807
AvaII GGWCC 2 cut(s) 226, 285
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 323
BccI CCATC 3 cut(s) 506, 619, 809
BceAI ACGGC 3 cut(s) 184, 335, 373
BciT130I CCWGG 3 cut(s) 223, 356, 743
BcoDI GTCTC 3 cut(s) 338, 377, 869
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 4 cut(s) 213, 250, 337, 375
BlsI GCNGC 4 cut(s) 214, 251, 338, 376
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 3 cut(s) 223, 356, 743
Bme18I GGWCC 2 cut(s) 226, 285
BmgT120I GGNCC 6 cut(s) 97, 226, 247, 285, 661, 798
BmiI GGNNCC 5 cut(s) 227, 228, 274, 724, 751
BmrFI CCNGG 3 cut(s) 223, 356, 743
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 3 cut(s) 186, 459, 619
BmuI ACTGGG 1 cut(s) 601
BoxI GACNNNNGTC 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 764
BsaBI GATNNNNATC 1 cut(s) 675
BsaHI GRCGYC 2 cut(s) 273, 386
BsaI GGTCTC 2 cut(s) 338, 869
BsaJI CCNNGG 4 cut(s) 166, 221, 222, 579
BsaWI WCCGGW 2 cut(s) 282, 860
BsaXI ACNNNNNCTCC 6 cut(s) 113, 143, 606, 636, 741, 771
Bsc4I CCNNNNNNNGG 5 cut(s) 282, 395, 512, 611, 824
Bse118I RCCGGY 2 cut(s) 269, 860
Bse1I ACTGG 2 cut(s) 607, 811
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 3 cut(s) 223, 356, 743
BseDI CCNNGG 4 cut(s) 166, 221, 222, 579
BseGI GGATG 4 cut(s) 105, 330, 531, 634
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 5 cut(s) 282, 395, 512, 611, 824
BseMII CTCAG 1 cut(s) 880
BseNI ACTGG 2 cut(s) 607, 811
BseRI GAGGAG 4 cut(s) 53, 56, 118, 257
BseXI GCAGC 1 cut(s) 323
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 3 cut(s) 252, 258, 368
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 5 cut(s) 98, 249, 485, 662, 799
BshNI GGYRCC 1 cut(s) 272
BshTI ACCGGT 1 cut(s) 860
BsiEI CGRYCG 1 cut(s) 175
BsiSI CCGG 3 cut(s) 270, 283, 861
BslFI GGGAC 2 cut(s) 204, 239
BslI CCNNNNNNNGG 5 cut(s) 282, 395, 512, 611, 824
BsmAI GTCTC 3 cut(s) 338, 377, 869
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 2 cut(s) 204, 239
BsnI GGCC 5 cut(s) 98, 249, 485, 662, 799
Bso31I GGTCTC 2 cut(s) 338, 869
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 4 cut(s) 201, 289, 424, 571
BspANI GGCC 5 cut(s) 98, 249, 485, 662, 799
BspCNI CTCAG 1 cut(s) 879
BspFNI CGCG 3 cut(s) 252, 258, 368
BspLI GGNNCC 5 cut(s) 227, 228, 274, 724, 751
BspPI GGATC 3 cut(s) 209, 419, 579
BspT107I GGYRCC 1 cut(s) 272
BspTNI GGTCTC 2 cut(s) 338, 869
BsrBI CCGCTC 1 cut(s) 215
BsrFI RCCGGY 2 cut(s) 269, 860
BsrI ACTGG 2 cut(s) 607, 811
BssAI RCCGGY 2 cut(s) 269, 860
BssECI CCNNGG 4 cut(s) 166, 221, 222, 579
BssMI GATC 4 cut(s) 201, 289, 424, 571
BssNI GRCGYC 2 cut(s) 273, 386
Bst2UI CCWGG 3 cut(s) 223, 356, 743
Bst4CI ACNGT 6 cut(s) 311, 407, 580, 710, 757, 776
BstACI GRCGYC 2 cut(s) 273, 386
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 866
BstDSI CCRYGG 2 cut(s) 166, 579
BstF5I GGATG 4 cut(s) 105, 330, 531, 634
BstFNI CGCG 3 cut(s) 252, 258, 368
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 4 cut(s) 165, 260, 275, 370
BstKTI GATC 4 cut(s) 204, 292, 427, 574
BstMAI GTCTC 3 cut(s) 338, 377, 869
BstMBI GATC 4 cut(s) 201, 289, 424, 571
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 3 cut(s) 255, 264, 374
BstNI CCWGG 3 cut(s) 223, 356, 743
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 3 cut(s) 221, 354, 741
BstUI CGCG 3 cut(s) 252, 258, 368
BstV1I GCAGC 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 307
BsuRI GGCC 5 cut(s) 98, 249, 485, 662, 799
BtgI CCRYGG 2 cut(s) 166, 579
BtsCI GGATG 4 cut(s) 105, 330, 531, 634
BtsIMutI CAGTG 1 cut(s) 614
Cac8I GCNNGC 1 cut(s) 372
CfoI GCGC 4 cut(s) 165, 260, 275, 370
Cfr10I RCCGGY 2 cut(s) 269, 860
Cfr13I GGNCC 6 cut(s) 97, 226, 247, 285, 661, 798
CpoI CGGWCCG 1 cut(s) 285
CseI GACGC 3 cut(s) 241, 328, 394
Csp6I GTAC 1 cut(s) 772
CspAI ACCGGT 1 cut(s) 860
CspI CGGWCCG 1 cut(s) 285
CviAII CATG 1 cut(s) 160
CviQI GTAC 1 cut(s) 772
DdeI CTNAG 1 cut(s) 866
DinI GGCGCC 1 cut(s) 274
DpnI GATC 4 cut(s) 203, 291, 426, 573
DpnII GATC 4 cut(s) 201, 289, 424, 571
Eco24I GRGCYC 1 cut(s) 195
Eco31I GGTCTC 2 cut(s) 338, 869
Eco47I GGWCC 2 cut(s) 226, 285
EcoO109I RGGNCCY 2 cut(s) 226, 661
EcoRII CCWGG 3 cut(s) 221, 354, 741
EcoT38I GRGCYC 1 cut(s) 195
EgeI GGCGCC 1 cut(s) 274
EheI GGCGCC 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 1 cut(s) 163
FaiI YATR 6 cut(s) 161, 456, 566, 645, 760, 762
FaqI GGGAC 2 cut(s) 204, 239
FatI CATG 1 cut(s) 159
FauI CCCGC 1 cut(s) 203
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 4 cut(s) 213, 250, 337, 375
FokI GGATG 4 cut(s) 92, 317, 518, 641
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 4 cut(s) 213, 250, 337, 375
GlaI GCGC 4 cut(s) 164, 259, 274, 369
GluI GCNGC 4 cut(s) 213, 250, 337, 375
GsaI CCCAGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 764
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 5 cut(s) 98, 249, 485, 662, 799
HapII CCGG 3 cut(s) 270, 283, 861
HgaI GACGC 3 cut(s) 241, 328, 394
HhaI GCGC 4 cut(s) 165, 260, 275, 370
Hin1I GRCGYC 2 cut(s) 273, 386
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 4 cut(s) 163, 258, 273, 368
HinP1I GCGC 4 cut(s) 163, 258, 273, 368
HincII GTYRAC 1 cut(s) 410
HindII GTYRAC 1 cut(s) 410
HinfI GANTC 2 cut(s) 588, 717
HpaII CCGG 3 cut(s) 270, 283, 861
HphI GGTGA 5 cut(s) 299, 355, 506, 722, 807
Hpy166II GTNNAC 3 cut(s) 307, 410, 592
Hpy188I TCNGA 3 cut(s) 289, 722, 858
Hpy188III TCNNGA 2 cut(s) 343, 382
Hpy8I GTNNAC 3 cut(s) 307, 410, 592
Hpy99I CGWCG 5 cut(s) 155, 158, 242, 344, 394
HpyAV CCTTC 6 cut(s) 20, 271, 337, 554, 707, 789
HpyCH4III ACNGT 6 cut(s) 311, 407, 580, 710, 757, 776
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 267, 632, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 255, 264, 374
HpyF3I CTNAG 1 cut(s) 866
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 2 cut(s) 273, 386
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 4 cut(s) 163, 258, 273, 368
KasI GGCGCC 1 cut(s) 272
KflI GGGWCCC 1 cut(s) 226
Kzo9I GATC 4 cut(s) 201, 289, 424, 571
LmnI GCTCC 4 cut(s) 285, 508, 699, 749
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 3 cut(s) 186, 459, 619
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 4 cut(s) 361, 700, 813, 869
MalI GATC 4 cut(s) 203, 291, 426, 573
MbiI CCGCTC 1 cut(s) 215
MboI GATC 4 cut(s) 201, 289, 424, 571
MboII GAAGA 2 cut(s) 5, 307
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 4 cut(s) 36, 447, 517, 688
Mly113I GGCGCC 1 cut(s) 273
MlyI GAGTC 2 cut(s) 597, 726
MmeI TCCRAC 1 cut(s) 700
MspA1I CMGCKG 2 cut(s) 198, 336
MspI CCGG 3 cut(s) 270, 283, 861
MspR9I CCNGG 3 cut(s) 223, 356, 743
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 3 cut(s) 223, 356, 743
MvnI CGCG 3 cut(s) 252, 258, 368
MwoI GCNNNNNNNGC 3 cut(s) 255, 264, 374
NarI GGCGCC 1 cut(s) 273
NdeII GATC 4 cut(s) 201, 289, 424, 571
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 5 cut(s) 227, 228, 274, 724, 751
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 3 cut(s) 361, 700, 813
PasI CCCWGGG 1 cut(s) 222
PcsI WCGNNNNNNNCGW 5 cut(s) 186, 300, 348, 378, 734
PflFI GACNNNGTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 512
PfoI TCCNGGA 1 cut(s) 741
PinAI ACCGGT 1 cut(s) 860
PkrI GCNGC 4 cut(s) 214, 251, 338, 376
PleI GAGTC 2 cut(s) 596, 725
PluTI GGCGCC 1 cut(s) 276
PpsI GAGTC 2 cut(s) 596, 725
PpuMI RGGWCCY 1 cut(s) 226
PshAI GACNNNNGTC 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 3 cut(s) 221, 354, 741
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 3 cut(s) 221, 354, 741
PspN4I GGNNCC 5 cut(s) 227, 228, 274, 724, 751
PspPI GGNCC 6 cut(s) 97, 226, 247, 285, 661, 798
PspPPI RGGWCCY 1 cut(s) 226
PsrI GAACNNNNNNTAC 2 cut(s) 715, 747
PsyI GACNNNGTC 1 cut(s) 388
RsaI GTAC 1 cut(s) 773
RsaNI GTAC 1 cut(s) 772
Rsr2I CGGWCCG 1 cut(s) 285
RsrII CGGWCCG 1 cut(s) 285
SatI GCNGC 4 cut(s) 213, 250, 337, 375
Sau3AI GATC 4 cut(s) 201, 289, 424, 571
Sau96I GGNCC 6 cut(s) 97, 226, 247, 285, 661, 798
ScaI AGTACT 1 cut(s) 773
SchI GAGTC 2 cut(s) 597, 726
ScrFI CCNGG 3 cut(s) 223, 356, 743
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 3 cut(s) 186, 459, 619
SfoI GGCGCC 1 cut(s) 274
SgrAI CRCCGGYG 1 cut(s) 269
SinI GGWCC 2 cut(s) 226, 285
Sse9I AATT 4 cut(s) 36, 447, 517, 688
SspDI GGCGCC 1 cut(s) 272
SspI AATATT 1 cut(s) 850
StyD4I CCNGG 3 cut(s) 221, 354, 741
TaaI ACNGT 6 cut(s) 311, 407, 580, 710, 757, 776
TaiI ACGT 1 cut(s) 153
TaqI TCGA 7 cut(s) 180, 189, 240, 342, 381, 490, 728
TasI AATT 4 cut(s) 36, 447, 517, 688
TatI WGTACW 1 cut(s) 771
TauI GCSGC 3 cut(s) 215, 252, 377
TscAI CASTG 1 cut(s) 614
TseFI GTSAC 3 cut(s) 361, 700, 813
TseI GCWGC 1 cut(s) 336
Tsp45I GTSAC 3 cut(s) 361, 700, 813
TspDTI ATGAA 3 cut(s) 319, 777, 870
TspRI CASTG 1 cut(s) 614
Tth111I GACNNNGTC 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 226, 285
XapI RAATTY 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 591
ZrmI AGTACT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.