Rroxscaffold_4G00308260
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006635
Physical Location & Seq
Forward (+)
29772802 .. 29777661
4860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00308260.1

Sequence Viewer

Length: 756 bp
ATGGACGCCTCCGGCGGTCAAACCCAGCCCCACCGCAACCACTCCGACCATTCCTCCGCCCACCACCACCAAAACGTCGTCGTCATGCGCCACGGCGACCGCATCGACAACTTCGAGCCCCGCTGGATCAAAAACGCCCCCGCCCGTGGGACCCGCCTCTCGTGGAGGAGGGCCGGGTCCGGGCCTTCTGCACAGGCGCCAAGCTCCGTTATGGGGAAGGTCTCAATTGAATATGGCTTGTGCGAGATGCTAAATAGAGAGGCCATTCGTGGTGATGTAGCTCCAAAAGATGGAAATTGGGGTTTCAACATCCCAGAACTTGAAGCCATGTTCCCAGAAGGGACGGTGGATCGCACTGTGGAAAGAGTTTACAAAGAGTTGCCCCAATGGGGAGAGAGTGTGATGGATGCAAGGTCAAGGTATGCTAATGTGGTTCAGGCCCTTGCAGATAAACACCCTATGGAAAATTTGCTTCTTGTCACTCACGGTGCAGGAGTCGGTGCCTCAATTAGTTCATTCCTGGAGGGTGCCACAGTATATGAAGCAGAGTACTGTGCATATTCAGAACTACGAAGGCTCATCTTCTGCAATGACCAGTCATCGACTGCTGGAAAGTTTGAGTGCGACTGTGCAAAGGATCGTGCTACTCTTGTTAAGGCTCTGGAGACCTTGGTTGGACAGCATTCTCGACAAACCGGAATCACCCGAGTGAAGAAGGCTGGAAAAATGGCTGCGAAATTGGTGTATTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

251

Amino Acids

27.71

Weight (kDa)

8.26

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 109 - 176 6.8e-07 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 196, 500, 527
AccB7I CCANNNNNTGG 1 cut(s) 290
AciI CCGC 7 cut(s) 15, 34, 57, 100, 121, 141, 154
AclWI GGATC 3 cut(s) 134, 357, 645
AcsI RAATTY 1 cut(s) 466
AcyI GRCGYC 2 cut(s) 6, 197
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 6 cut(s) 146, 147, 180, 213, 290, 389
AgsI TTSAA 4 cut(s) 230, 307, 323, 751
AjnI CCWGG 1 cut(s) 519
AleI CACNNNNGTG 1 cut(s) 707
AluBI AGCT 2 cut(s) 204, 281
AluI AGCT 2 cut(s) 204, 281
Alw26I GTCTC 2 cut(s) 226, 659
AlwI GGATC 3 cut(s) 134, 357, 645
Ama87I CYCGRG 1 cut(s) 705
AoxI GGCC 4 cut(s) 171, 182, 261, 438
ApeKI GCWGC 1 cut(s) 731
ApoI RAATTY 1 cut(s) 466
AspLEI GCGC 2 cut(s) 90, 199
AspS9I GGNCC 5 cut(s) 150, 171, 177, 182, 439
AsuC2I CCSGG 2 cut(s) 175, 181
AsuHPI GGTGA 2 cut(s) 284, 694
AvaI CYCGRG 1 cut(s) 705
AvaII GGWCC 2 cut(s) 150, 177
BanI GGYRCC 3 cut(s) 196, 500, 527
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 160
BbvI GCAGC 1 cut(s) 718
BccI CCATC 2 cut(s) 284, 397
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 521
BcnI CCSGG 2 cut(s) 175, 181
BcoDI GTCTC 2 cut(s) 226, 659
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 1 cut(s) 732
BlsI GCNGC 1 cut(s) 733
BmcAI AGTACT 1 cut(s) 551
Bme1390I CCNGG 3 cut(s) 175, 181, 521
Bme18I GGWCC 2 cut(s) 150, 177
BmeT110I CYCGRG 1 cut(s) 705
BmgT120I GGNCC 5 cut(s) 150, 171, 177, 182, 439
BmiI GGNNCC 6 cut(s) 151, 152, 178, 198, 502, 529
BmrFI CCNGG 3 cut(s) 175, 181, 521
BmsI GCATC 3 cut(s) 111, 237, 397
BpmI CTGGAG 2 cut(s) 542, 683
BpuMI CCSGG 2 cut(s) 175, 181
BsaHI GRCGYC 2 cut(s) 6, 197
BsaI GGTCTC 2 cut(s) 226, 659
BsaJI CCNNGG 3 cut(s) 91, 145, 669
BsaWI WCCGGW 1 cut(s) 695
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 384, 414
Bsc4I CCNNNNNNNGG 6 cut(s) 146, 147, 180, 213, 290, 389
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 1 cut(s) 595
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 3 cut(s) 91, 145, 669
BseGI GGATG 2 cut(s) 309, 412
BseLI CCNNNNNNNGG 6 cut(s) 146, 147, 180, 213, 290, 389
BseMI GCAATG 1 cut(s) 595
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 718
BseYI CCCAGC 1 cut(s) 24
BsgI GTGCAG 2 cut(s) 174, 510
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 4 cut(s) 173, 184, 263, 440
BshNI GGYRCC 3 cut(s) 196, 500, 527
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 705
BsiSI CCGG 4 cut(s) 12, 174, 180, 696
BslFI GGGAC 2 cut(s) 163, 355
BslI CCNNNNNNNGG 6 cut(s) 146, 147, 180, 213, 290, 389
BsmAI GTCTC 2 cut(s) 226, 659
BsmFI GGGAC 2 cut(s) 163, 355
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 4 cut(s) 173, 184, 263, 440
Bso31I GGTCTC 2 cut(s) 226, 659
BsoBI CYCGRG 1 cut(s) 705
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 126, 349, 637
BspACI CCGC 7 cut(s) 15, 34, 57, 100, 121, 141, 154
BspANI GGCC 4 cut(s) 173, 184, 263, 440
BspLI GGNNCC 6 cut(s) 151, 152, 178, 198, 502, 529
BspPI GGATC 3 cut(s) 134, 357, 645
BspT107I GGYRCC 3 cut(s) 196, 500, 527
BspTNI GGTCTC 2 cut(s) 226, 659
BsrDI GCAATG 1 cut(s) 595
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 3 cut(s) 91, 145, 669
BssMI GATC 3 cut(s) 126, 349, 637
BssNI GRCGYC 2 cut(s) 6, 197
BssSI CACGAG 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 669
Bst2BI CACGAG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 6 cut(s) 346, 358, 488, 535, 554, 629
BstACI GRCGYC 2 cut(s) 6, 197
BstDSI CCRYGG 2 cut(s) 91, 145
BstF5I GGATG 2 cut(s) 309, 412
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 2 cut(s) 90, 199
BstKTI GATC 3 cut(s) 129, 352, 640
BstMAI GTCTC 2 cut(s) 226, 659
BstMBI GATC 3 cut(s) 126, 349, 637
BstMCI CGRYCG 1 cut(s) 100
BstNI CCWGG 1 cut(s) 521
BstSCI CCNGG 3 cut(s) 173, 179, 519
BstV1I GCAGC 1 cut(s) 718
BsuRI GGCC 4 cut(s) 173, 184, 263, 440
BtgI CCRYGG 2 cut(s) 91, 145
BtsCI GGATG 2 cut(s) 309, 412
BtsIMutI CAGTG 1 cut(s) 354
CfoI GCGC 2 cut(s) 90, 199
Cfr13I GGNCC 5 cut(s) 150, 171, 177, 182, 439
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 550
CviAII CATG 2 cut(s) 85, 328
CviQI GTAC 1 cut(s) 550
DinI GGCGCC 1 cut(s) 198
DpnI GATC 3 cut(s) 128, 351, 639
DpnII GATC 3 cut(s) 126, 349, 637
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 2 cut(s) 226, 659
Eco47I GGWCC 2 cut(s) 150, 177
Eco88I CYCGRG 1 cut(s) 705
EcoO109I RGGNCCY 2 cut(s) 150, 439
EcoRII CCWGG 1 cut(s) 519
EcoT14I CCWWGG 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 198
EheI GGCGCC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 2 cut(s) 88, 331
FaiI YATR 9 cut(s) 86, 212, 234, 329, 423, 461, 538, 540, 559
FaqI GGGAC 2 cut(s) 163, 355
FatI CATG 2 cut(s) 84, 327
FauI CCCGC 3 cut(s) 128, 148, 161
Fnu4HI GCNGC 1 cut(s) 732
FokI GGATG 2 cut(s) 296, 419
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 732
GlaI GCGC 2 cut(s) 89, 198
GluI GCNGC 1 cut(s) 732
GsaI CCCAGC 1 cut(s) 28
GsuI CTGGAG 2 cut(s) 542, 683
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 4 cut(s) 173, 184, 263, 440
HapII CCGG 4 cut(s) 12, 174, 180, 696
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 90, 199
Hin1I GRCGYC 2 cut(s) 6, 197
Hin1II CATG 2 cut(s) 88, 331
Hin6I GCGC 2 cut(s) 88, 197
HinP1I GCGC 2 cut(s) 88, 197
HinfI GANTC 2 cut(s) 495, 699
HpaII CCGG 4 cut(s) 12, 174, 180, 696
HphI GGTGA 2 cut(s) 284, 694
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 46, 565
Hpy188III TCNNGA 2 cut(s) 662, 687
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 5 cut(s) 195, 211, 332, 567, 709
HpyCH4III ACNGT 6 cut(s) 346, 358, 488, 535, 554, 629
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 7 cut(s) 191, 410, 446, 491, 557, 588, 632
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 2 cut(s) 6, 197
Hsp92II CATG 2 cut(s) 88, 331
HspAI GCGC 2 cut(s) 88, 197
KasI GGCGCC 1 cut(s) 196
KflI GGGWCCC 1 cut(s) 150
Kzo9I GATC 3 cut(s) 126, 349, 637
LmnI GCTCC 2 cut(s) 209, 286
Lsp1109I GCAGC 1 cut(s) 718
LweI GCATC 3 cut(s) 111, 237, 397
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 478
MalI GATC 3 cut(s) 128, 351, 639
MboI GATC 3 cut(s) 126, 349, 637
MboII GAAGA 2 cut(s) 574, 724
MfeI CAATTG 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 6 cut(s) 225, 295, 466, 507, 737, 751
Mly113I GGCGCC 1 cut(s) 197
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 2 cut(s) 69, 655
MnlI CCTC 8 cut(s) 19, 64, 159, 162, 167, 253, 514, 517
MseI TTAA 1 cut(s) 654
MslI CAYNNNNRTG 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 4 cut(s) 12, 174, 180, 696
MspR9I CCNGG 3 cut(s) 175, 181, 521
MunI CAATTG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 1 cut(s) 521
NarI GGCGCC 1 cut(s) 197
NciI CCSGG 2 cut(s) 175, 181
NdeII GATC 3 cut(s) 126, 349, 637
NlaIII CATG 2 cut(s) 88, 331
NlaIV GGNNCC 6 cut(s) 151, 152, 178, 198, 502, 529
NmuCI GTSAC 1 cut(s) 478
OliI CACNNNNGTG 1 cut(s) 707
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 1 cut(s) 682
PfeI GAWTC 1 cut(s) 699
PflMI CCANNNNNTGG 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 519
PkrI GCNGC 1 cut(s) 733
PleI GAGTC 1 cut(s) 503
PluTI GGCGCC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 503
PpuMI RGGWCCY 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 519
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 6 cut(s) 151, 152, 178, 198, 502, 529
PspPI GGNCC 5 cut(s) 150, 171, 177, 182, 439
PspPPI RGGWCCY 1 cut(s) 150
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 1 cut(s) 707
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 1 cut(s) 732
Sau3AI GATC 3 cut(s) 126, 349, 637
Sau96I GGNCC 5 cut(s) 150, 171, 177, 182, 439
ScaI AGTACT 1 cut(s) 551
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 3 cut(s) 175, 181, 521
SduI GDGCHC 1 cut(s) 120
SetI ASST 7 cut(s) 78, 206, 222, 283, 416, 422, 671
SfaNI GCATC 3 cut(s) 111, 237, 397
SfoI GGCGCC 1 cut(s) 198
SinI GGWCC 2 cut(s) 150, 177
SmiMI CAYNNNNRTG 1 cut(s) 707
Sse9I AATT 6 cut(s) 225, 295, 466, 507, 737, 751
SsiI CCGC 7 cut(s) 15, 34, 57, 100, 121, 141, 154
SspDI GGCGCC 1 cut(s) 196
StyD4I CCNGG 3 cut(s) 173, 179, 519
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 6 cut(s) 346, 358, 488, 535, 554, 629
TaiI ACGT 1 cut(s) 78
TaqI TCGA 4 cut(s) 105, 114, 602, 688
TasI AATT 6 cut(s) 225, 295, 466, 507, 737, 751
TatI WGTACW 1 cut(s) 549
TfiI GAWTC 1 cut(s) 699
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 1 cut(s) 731
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 2 cut(s) 504, 555
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 290
VpaK11BI GGWCC 2 cut(s) 150, 177
XapI RAATTY 1 cut(s) 466
ZrmI AGTACT 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.