AT3G61120

Agamous-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009106
Physical Location & Seq
Reverse (-)
22618259 .. 22620529
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61120.1

Sequence Viewer

Length: 735 bp
ATGGGAAGAGGCAAAGTGGAAGTGAAGAGAATTGAGAACAAGATCACTAGACAAGTAACCTTCTCCAAAAGAAAAAGTGGTTTGCTCAAGAAAGCCTACGAACTCTCTGTTCTTTGTGATGCAGAGGTTTCTCTCATAATCTTCTCCACCGGTGGCAAGCTCTACGAGTTCAGCAATGTCGGAGTTGGCAGAACCATTGAGAGGTACTATCGCTGTAAAGACAATCTTTTGGACAATGATACGCTTGAAGATACTCAGGGCTTGCGTCAAGAGGTGACAAAGCTCAAATGCAAATACGAATCTCTTCTTCGCACTCATAGGAATTTGGTTGGGGAAGATCTTGAAGGGATGAGTATAAAGGAATTGCAGACGCTGGAGAGACAGCTTGAAGGAGCTCTTTCCGCAACCCGAAAACAAAAGACGCAGGTTATGATGGAACAAATGGAAGAGCTTCGGAGAAAGGAGAGGGAGCTCGGAGATATAAACAATAAGCTAAAGCTTGAGACAGAAGATCATGATTTTAAAGGCTTTCAAGACCTACTGCTTAACCCGGTGCTCACCGCCGGTTGTTCCACTGATTTTTCCTTGCAATCAACTCATCAAAATTATATATCGGATTGCAACCTTGGATATTTTTTACAGATTGGGTTTCAACAACACTATGAGCAAGGTGAAGGATCTTCGGTGACAAAGAGTAATGCAAGAAGTGATGCTGAGACCAACTTTGTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

244

Amino Acids

27.97

Weight (kDa)

6.47

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 2.3e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 85 - 168 1.3e-24 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 415
AciI CCGC 2 cut(s) 402, 561
AclWI GGATC 1 cut(s) 685
AcsI RAATTY 1 cut(s) 322
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 201
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 5 cut(s) 248, 344, 389, 533, 653
AluBI AGCT 8 cut(s) 160, 283, 385, 395, 451, 472, 493, 499
AluI AGCT 8 cut(s) 160, 283, 385, 395, 451, 472, 493, 499
Alw21I GWGCWC 3 cut(s) 397, 474, 558
Alw26I GTCTC 3 cut(s) 373, 497, 710
AlwI GGATC 1 cut(s) 685
AlwNI CAGNNNCTG 1 cut(s) 373
ApoI RAATTY 1 cut(s) 322
AsiGI ACCGGT 1 cut(s) 149
Asp700I GAANNNNTTC 2 cut(s) 303, 450
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 4 cut(s) 286, 550, 683, 697
BanII GRGCYC 2 cut(s) 397, 474
Bbv12I GWGCWC 3 cut(s) 397, 474, 558
BccI CCATC 1 cut(s) 427
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 3 cut(s) 373, 497, 710
BfaI CTAG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 415
BglII AGATCT 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 551
BmrFI CCNGG 1 cut(s) 551
BmsI GCATC 2 cut(s) 109, 700
BpmI CTGGAG 1 cut(s) 395
BpuEI CTTGAG 2 cut(s) 71, 521
BpuMI CCSGG 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 1 cut(s) 625
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 2 cut(s) 149, 563
Bse3DI GCAATG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 625
BseGI GGATG 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 269, 705
BshTI ACCGGT 1 cut(s) 149
BsiHKAI GWGCWC 3 cut(s) 397, 474, 558
BsiSI CCGG 3 cut(s) 150, 551, 564
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 3 cut(s) 373, 497, 710
Bso31I GGTCTC 1 cut(s) 710
Bsp1286I GDGCHC 3 cut(s) 397, 474, 558
Bsp143I GATC 4 cut(s) 42, 337, 511, 677
BspACI CCGC 2 cut(s) 402, 561
BspCNI CTCAG 2 cut(s) 268, 706
BspHI TCATGA 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 415
BspPI GGATC 1 cut(s) 685
BspQI GCTCTTC 1 cut(s) 441
BspTNI GGTCTC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 181
BsrFI RCCGGY 2 cut(s) 149, 563
BssAI RCCGGY 2 cut(s) 149, 563
BssECI CCNNGG 1 cut(s) 625
BssMI GATC 4 cut(s) 42, 337, 511, 677
BssT1I CCWWGG 1 cut(s) 625
Bst6I CTCTTC 3 cut(s) 20, 309, 441
BstC8I GCNNGC 2 cut(s) 158, 263
BstDEI CTNAG 2 cut(s) 255, 714
BstF5I GGATG 1 cut(s) 354
BstKTI GATC 4 cut(s) 45, 340, 514, 680
BstMAI GTCTC 3 cut(s) 373, 497, 710
BstMBI GATC 4 cut(s) 42, 337, 511, 677
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 549
BstX2I RGATCY 2 cut(s) 337, 677
BstYI RGATCY 2 cut(s) 337, 677
BtsCI GGATG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 573
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 2 cut(s) 158, 263
CaiI CAGNNNCTG 1 cut(s) 373
CciI TCATGA 1 cut(s) 514
Cfr10I RCCGGY 2 cut(s) 149, 563
CseI GACGC 3 cut(s) 254, 379, 430
Csp6I GTAC 1 cut(s) 205
CspAI ACCGGT 1 cut(s) 149
CviAII CATG 1 cut(s) 515
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 255, 714
DpnI GATC 4 cut(s) 44, 339, 513, 679
DpnII GATC 4 cut(s) 42, 337, 511, 677
DraI TTTAAA 1 cut(s) 523
Eam1104I CTCTTC 3 cut(s) 20, 309, 441
EarI CTCTTC 3 cut(s) 20, 309, 441
Ecl136II GAGCTC 2 cut(s) 395, 472
Eco130I CCWWGG 1 cut(s) 625
Eco24I GRGCYC 2 cut(s) 397, 474
Eco31I GGTCTC 1 cut(s) 710
Eco53kI GAGCTC 2 cut(s) 395, 472
EcoICRI GAGCTC 2 cut(s) 395, 472
EcoT14I CCWWGG 1 cut(s) 625
EcoT38I GRGCYC 2 cut(s) 397, 474
ErhI CCWWGG 1 cut(s) 625
FaeI CATG 1 cut(s) 518
FaiI YATR 9 cut(s) 137, 318, 356, 431, 482, 516, 609, 611, 663
FalI AAGNNNNNCTT 4 cut(s) 210, 242, 381, 413
FatI CATG 1 cut(s) 514
FokI GGATG 1 cut(s) 361
FriOI GRGCYC 2 cut(s) 397, 474
FspBI CTAG 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 395
HapII CCGG 3 cut(s) 150, 551, 564
HgaI GACGC 3 cut(s) 254, 379, 430
Hin1II CATG 1 cut(s) 518
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 1 cut(s) 299
HpaII CCGG 3 cut(s) 150, 551, 564
HphI GGTGA 4 cut(s) 286, 550, 683, 697
Hpy188I TCNGA 4 cut(s) 182, 456, 476, 616
Hpy188III TCNNGA 5 cut(s) 88, 269, 341, 515, 533
HpyAV CCTTC 4 cut(s) 70, 338, 383, 668
HpyCH4V TGCA 6 cut(s) 122, 291, 367, 589, 621, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 2 cut(s) 255, 714
Hsp92II CATG 1 cut(s) 518
Kzo9I GATC 4 cut(s) 42, 337, 511, 677
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 2 cut(s) 392, 469
LpnPI CCDG 6 cut(s) 163, 242, 359, 410, 564, 577
LweI GCATC 2 cut(s) 109, 700
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 3 cut(s) 55, 274, 685
MalI GATC 4 cut(s) 44, 339, 513, 679
MboI GATC 4 cut(s) 42, 337, 511, 677
MflI RGATCY 2 cut(s) 337, 677
MhlI GDGCHC 3 cut(s) 397, 474, 558
MluCI AATT 4 cut(s) 30, 322, 362, 604
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 4 cut(s) 118, 195, 265, 459
MroXI GAANNNNTTC 2 cut(s) 303, 450
MseI TTAA 2 cut(s) 522, 546
MspI CCGG 3 cut(s) 150, 551, 564
MspR9I CCNGG 1 cut(s) 551
MwoI GCNNNNNNNGC 1 cut(s) 401
NciI CCSGG 1 cut(s) 551
NdeII GATC 4 cut(s) 42, 337, 511, 677
NlaIII CATG 1 cut(s) 518
NmuCI GTSAC 2 cut(s) 274, 685
PagI TCATGA 1 cut(s) 514
PciSI GCTCTTC 1 cut(s) 441
PdmI GAANNNNTTC 2 cut(s) 303, 450
PfeI GAWTC 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 149
Psp124BI GAGCTC 2 cut(s) 397, 474
PstNI CAGNNNCTG 1 cut(s) 373
PsuI RGATCY 2 cut(s) 337, 677
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacI GAGCTC 2 cut(s) 397, 474
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 522, 546
Sau3AI GATC 4 cut(s) 42, 337, 511, 677
ScrFI CCNGG 1 cut(s) 551
SduI GDGCHC 3 cut(s) 397, 474, 558
SfaNI GCATC 2 cut(s) 109, 700
SgrAI CRCCGGYG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 86, 500
SmoI CTYRAG 2 cut(s) 86, 500
Sse9I AATT 4 cut(s) 30, 322, 362, 604
SsiI CCGC 2 cut(s) 402, 561
SspMI CTAG 1 cut(s) 48
SstI GAGCTC 2 cut(s) 397, 474
StyD4I CCNGG 1 cut(s) 549
StyI CCWWGG 1 cut(s) 625
TasI AATT 4 cut(s) 30, 322, 362, 604
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 522, 546
Tru9I TTAA 2 cut(s) 522, 546
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 2 cut(s) 274, 685
Tsp45I GTSAC 2 cut(s) 274, 685
TspRI CASTG 1 cut(s) 580
XapI RAATTY 1 cut(s) 322
XmnI GAANNNNTTC 2 cut(s) 303, 450
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.