Rh1CG219200
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009106
Physical Location & Seq
Forward (+)
46992249 .. 46998857
6609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG219200.1

Sequence Viewer

Length: 555 bp
ATGACCCAAACCCTTGAGAGATACCAACGAAGCAGCTTCAGTCCTCATGACAACGCCAACAAACGGGAAACAGAGTGCTGGTATGAAGAAGTCTCAAAACTGAGAGCTAAATATGACTCACTTCTGCGTACTCAAAGGCATTTGCTTGGGGAAGACCTTGGACCACTGAGTGTGAAGGAGTTGCAAAATCTTGAAAAACAGCTTGAAGGAGCTCTTACACAAGCCAGACAAAGGAAGACACAGATTATGATTGAACAAATGGAACACCTGCGCAAAAAGGAGCGACAGCTTGGAGACCTGAACCTGCAGCTTAGGGATAAGCTTCAGAAGGAGGGGGAAAATCTCAAAGCCATTCAAGACTTCTGGAGCTCTAATAGTGCAGCAGCTGGGCATAGCAACTTCTTGCATTCTTCGCAAGTCAGCCACATTGATCCCGCACCTGAACCCATCTTACAAATTGGGTACCATCACTATGTTGCTGCTGAATCCGCAGATGTTCCGAAGAGCATGGCCATGGCTGCTGAGACCAACTTCATCCAGGGATGGGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

184

Amino Acids

21.17

Weight (kDa)

6.45

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 20 - 109 7.5e-28 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 276
Acc16I TGCGCA 1 cut(s) 272
Acc36I ACCTGC 2 cut(s) 276, 312
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 462
AciI CCGC 2 cut(s) 435, 489
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 510
AcuI CTGAAG 2 cut(s) 22, 308
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 2 cut(s) 130, 464
AfiI CCNNNNNNNGG 3 cut(s) 63, 231, 544
AgsI TTSAA 4 cut(s) 194, 206, 254, 356
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 9 cut(s) 36, 107, 202, 212, 289, 310, 322, 369, 386
AluI AGCT 9 cut(s) 36, 107, 202, 212, 289, 310, 322, 369, 386
Alw21I GWGCWC 2 cut(s) 214, 371
Alw26I GTCTC 3 cut(s) 97, 288, 518
AlwI GGATC 1 cut(s) 425
AlwNI CAGNNNCTG 1 cut(s) 386
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 6 cut(s) 33, 307, 380, 383, 479, 518
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 161
BalI TGGCCA 1 cut(s) 512
BanI GGYRCC 1 cut(s) 462
BanII GRGCYC 2 cut(s) 214, 371
BbsI GAAGAC 2 cut(s) 159, 242
Bbv12I GWGCWC 2 cut(s) 214, 371
BbvI GCAGC 6 cut(s) 45, 319, 392, 395, 466, 505
BccI CCATC 3 cut(s) 455, 474, 537
BciT130I CCWGG 1 cut(s) 539
BcoDI GTCTC 3 cut(s) 97, 288, 518
BfmI CTRYAG 1 cut(s) 305
BfuAI ACCTGC 2 cut(s) 276, 312
BisI GCNGC 6 cut(s) 34, 308, 381, 384, 480, 519
BlsI GCNGC 6 cut(s) 35, 309, 382, 385, 481, 520
Bme1390I CCNGG 1 cut(s) 539
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 464
BmrFI CCNGG 1 cut(s) 539
BpiI GAAGAC 2 cut(s) 159, 242
BpmI CTGGAG 1 cut(s) 385
Bpu10I CCTNAGC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 35
BsaI GGTCTC 2 cut(s) 288, 518
BsaJI CCNNGG 3 cut(s) 157, 513, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 231, 544
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 3 cut(s) 157, 513, 538
BseGI GGATG 2 cut(s) 534, 548
BseLI CCNNNNNNNGG 3 cut(s) 63, 231, 544
BseMII CTCAG 3 cut(s) 92, 158, 513
BseXI GCAGC 6 cut(s) 45, 319, 392, 395, 466, 505
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 399
BshFI GGCC 1 cut(s) 512
BshNI GGYRCC 1 cut(s) 462
BsiHKAI GWGCWC 2 cut(s) 214, 371
BslI CCNNNNNNNGG 3 cut(s) 63, 231, 544
BsmAI GTCTC 3 cut(s) 97, 288, 518
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 1 cut(s) 512
Bso31I GGTCTC 2 cut(s) 288, 518
Bsp1286I GDGCHC 2 cut(s) 214, 371
Bsp143I GATC 1 cut(s) 430
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 2 cut(s) 435, 489
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 3 cut(s) 93, 159, 514
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 464
BspMAI CTGCAG 1 cut(s) 309
BspMI ACCTGC 2 cut(s) 276, 312
BspPI GGATC 1 cut(s) 425
BspQI GCTCTTC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 462
BspTNI GGTCTC 2 cut(s) 288, 518
BssECI CCNNGG 3 cut(s) 157, 513, 538
BssMI GATC 1 cut(s) 430
BssT1I CCWWGG 2 cut(s) 157, 513
Bst2UI CCWGG 1 cut(s) 539
Bst6I CTCTTC 1 cut(s) 497
BstDEI CTNAG 4 cut(s) 101, 167, 311, 522
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 2 cut(s) 534, 548
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 3 cut(s) 97, 288, 518
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 3 cut(s) 412, 488, 518
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 6 cut(s) 45, 319, 392, 395, 466, 505
BstV2I GAAGAC 2 cut(s) 159, 242
BsuRI GGCC 1 cut(s) 512
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 2 cut(s) 534, 548
BtsIMutI CAGTG 1 cut(s) 164
BveI ACCTGC 2 cut(s) 276, 312
CaiI CAGNNNCTG 1 cut(s) 386
CciI TCATGA 1 cut(s) 46
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 129, 463
CviAII CATG 3 cut(s) 47, 508, 514
CviQI GTAC 2 cut(s) 129, 463
DdeI CTNAG 4 cut(s) 101, 167, 311, 522
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
DraIII CACNNNGTG 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Ecl136II GAGCTC 2 cut(s) 212, 369
Eco130I CCWWGG 2 cut(s) 157, 513
Eco24I GRGCYC 2 cut(s) 214, 371
Eco31I GGTCTC 2 cut(s) 288, 518
Eco47I GGWCC 1 cut(s) 161
Eco53kI GAGCTC 2 cut(s) 212, 369
Eco57I CTGAAG 2 cut(s) 22, 308
EcoICRI GAGCTC 2 cut(s) 212, 369
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 157, 513
EcoT38I GRGCYC 2 cut(s) 214, 371
ErhI CCWWGG 2 cut(s) 157, 513
FaeI CATG 3 cut(s) 50, 511, 517
FaiI YATR 8 cut(s) 48, 84, 114, 248, 393, 474, 509, 515
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 3 cut(s) 46, 507, 513
FauI CCCGC 1 cut(s) 442
Fnu4HI GCNGC 6 cut(s) 34, 308, 381, 384, 480, 519
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 2 cut(s) 214, 371
Fsp4HI GCNGC 6 cut(s) 34, 308, 381, 384, 480, 519
FspI TGCGCA 1 cut(s) 272
GlaI GCGC 1 cut(s) 272
GluI GCNGC 6 cut(s) 34, 308, 381, 384, 480, 519
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 385
HaeIII GGCC 1 cut(s) 512
HhaI GCGC 1 cut(s) 273
Hin1II CATG 3 cut(s) 50, 511, 517
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 2 cut(s) 116, 485
Hpy188I TCNGA 2 cut(s) 327, 501
Hpy188III TCNNGA 4 cut(s) 47, 191, 356, 364
HpyAV CCTTC 3 cut(s) 169, 200, 322
HpyCH4V TGCA 4 cut(s) 184, 307, 380, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 412, 488, 518
HpyF3I CTNAG 4 cut(s) 101, 167, 311, 522
Hsp92II CATG 3 cut(s) 50, 511, 517
HspAI GCGC 1 cut(s) 271
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 430
LguI GCTCTTC 1 cut(s) 497
LmnI GCTCC 3 cut(s) 209, 280, 366
Lsp1109I GCAGC 6 cut(s) 45, 319, 392, 395, 466, 505
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 5 cut(s) 98, 164, 247, 402, 514
MhlI GDGCHC 2 cut(s) 214, 371
MlsI TGGCCA 1 cut(s) 512
MluCI AATT 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 512
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 54, 325
Mox20I TGGCCA 1 cut(s) 512
MscI TGGCCA 1 cut(s) 512
MslI CAYNNNNRTG 2 cut(s) 471, 512
Msp20I TGGCCA 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 539
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 3 cut(s) 412, 488, 518
NcoI CCATGG 1 cut(s) 513
NdeII GATC 1 cut(s) 430
NlaIII CATG 3 cut(s) 50, 511, 517
NlaIV GGNNCC 1 cut(s) 464
NsbI TGCGCA 1 cut(s) 272
PagI TCATGA 1 cut(s) 46
PaqCI CACCTGC 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 497
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 485
PkrI GCNGC 6 cut(s) 35, 309, 382, 385, 481, 520
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp124BI GAGCTC 2 cut(s) 214, 371
Psp6I CCWGG 1 cut(s) 537
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 464
PspPI GGNCC 1 cut(s) 161
PsrI GAACNNNNNNTAC 2 cut(s) 435, 467
PstI CTGCAG 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 386
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 2 cut(s) 130, 464
RsaNI GTAC 2 cut(s) 129, 463
RseI CAYNNNNRTG 2 cut(s) 471, 512
SacI GAGCTC 2 cut(s) 214, 371
SapI GCTCTTC 1 cut(s) 497
SatI GCNGC 6 cut(s) 34, 308, 381, 384, 480, 519
Sau3AI GATC 1 cut(s) 430
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 2 cut(s) 214, 371
SfcI CTRYAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 2 cut(s) 471, 512
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 1 cut(s) 456
SsiI CCGC 2 cut(s) 435, 489
SstI GAGCTC 2 cut(s) 214, 371
StyD4I CCNGG 1 cut(s) 537
StyI CCWWGG 2 cut(s) 157, 513
TasI AATT 1 cut(s) 456
TfiI GAWTC 1 cut(s) 485
TscAI CASTG 1 cut(s) 171
TseI GCWGC 6 cut(s) 33, 307, 380, 383, 479, 518
TspDTI ATGAA 2 cut(s) 99, 523
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.