Prupe.2G151000_v2.0.a1
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0009106
Physical Location & Seq
Forward (+)
20591912 .. 20596374
4463 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G151000.1

Sequence Viewer

Length: 735 bp
ATGGGGAGGGGGAGAGTGGAGCTGAAGAGAATAGAGAACAAGATCAACAGGCAGGTGACTTTCTCAAAGAGAAGAAATGGTTTGCTCAAGAAAGCCTATGAACTCTCTGTGCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCTAGCCGTGGCAAGCTCCATGAGTTTGGAAGTGCTGGTATGACCAAAACCCTCGAACGATACCAACATTCCTGCTTCAATCCTGAGGAAAACAGCACTGAACGTGAAGCACAGAGCTGGTATCAAGAAGTCACAAAACTGAAGGCTAAATATGAATCCCTTCTGCGCACTCAAAGGCAATTGCTTGGGGAAGATCTCGGACCACTGAATGTGAAGGAGTTGCAAAATCTTGAAAAACAACTTGAAGGAGCTCTTGCACAGGCCAGGCAAAGGAAGACACAGCTTATGATTGAACAAATGGAGGACCTGCGCAAAAAGGAGCGTCACCTTGGAGATCTTAACAAGCAGCTGAGGGTCAAGCTGGAGACAGAAGGACAAAATCTTAAAGCCATCCAAAACATGTGGAGCTCGAATGCAGCAGCTGGAAGTAGCAGCTTTTCTTTCCATTCTTCCCAAACCAACCCCATGGACTGCCAACCTCATGAACCTGTCTTGCAAATAGGGTACCATCAATATCTTCCTGCTGAGGGGCCTTCGATTTCGAAGAGCATGGCTTGTGAGACCAACTTCATCCAGGGATGGGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

245

Amino Acids

27.94

Weight (kDa)

9.1

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc16I TGCGCA 2 cut(s) 311, 455
Acc36I ACCTGC 2 cut(s) 43, 459
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 648
AcuI CTGAAG 2 cut(s) 44, 305
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 3 cut(s) 414, 671, 724
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 4 cut(s) 223, 377, 389, 437
AjnI CCWGG 2 cut(s) 407, 717
Alw21I GWGCWC 2 cut(s) 397, 554
Alw26I GTCTC 2 cut(s) 503, 698
AlwNI CAGNNNCTG 1 cut(s) 566
AoxI GGCC 2 cut(s) 405, 674
ApeKI GCWGC 4 cut(s) 490, 560, 563, 576
Asp700I GAANNNNTTC 1 cut(s) 303
Asp718I GGTACC 1 cut(s) 648
AspLEI GCGC 2 cut(s) 312, 456
AspS9I GGNCC 3 cut(s) 344, 448, 674
AsuHPI GGTGA 2 cut(s) 67, 461
AsuII TTCGAA 1 cut(s) 686
AvaII GGWCC 2 cut(s) 344, 448
AxyI CCTNAGG 1 cut(s) 228
BanI GGYRCC 1 cut(s) 648
BanII GRGCYC 2 cut(s) 397, 554
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 2 cut(s) 397, 554
BbvCI CCTCAGC 3 cut(s) 123, 494, 669
BbvI GCAGC 4 cut(s) 502, 572, 575, 588
BccI CCATC 3 cut(s) 542, 660, 717
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 2 cut(s) 409, 719
BcoDI GTCTC 2 cut(s) 503, 698
BfaI CTAG 1 cut(s) 147
BfuAI ACCTGC 2 cut(s) 43, 459
BglII AGATCT 2 cut(s) 337, 478
BisI GCNGC 4 cut(s) 491, 561, 564, 577
BlsI GCNGC 4 cut(s) 492, 562, 565, 578
Bme1390I CCNGG 2 cut(s) 409, 719
Bme18I GGWCC 2 cut(s) 344, 448
BmgT120I GGNCC 3 cut(s) 344, 448, 674
BmiI GGNNCC 2 cut(s) 650, 675
BmrFI CCNGG 2 cut(s) 409, 719
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 527
Bpu10I CCTNAGC 3 cut(s) 123, 494, 669
Bpu14I TTCGAA 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 698
BsaJI CCNNGG 4 cut(s) 151, 472, 609, 718
Bsc4I CCNNNNNNNGG 3 cut(s) 414, 671, 724
Bse21I CCTNAGG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 409, 719
BseDI CCNNGG 4 cut(s) 151, 472, 609, 718
BseGI GGATG 3 cut(s) 534, 714, 728
BseLI CCNNNNNNNGG 3 cut(s) 414, 671, 724
BseMII CTCAG 4 cut(s) 114, 219, 485, 660
BseXI GCAGC 4 cut(s) 502, 572, 575, 588
BshFI GGCC 2 cut(s) 407, 676
BshNI GGYRCC 1 cut(s) 648
BsiHKAI GWGCWC 2 cut(s) 397, 554
BslI CCNNNNNNNGG 3 cut(s) 414, 671, 724
BsmAI GTCTC 2 cut(s) 503, 698
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 2 cut(s) 407, 676
Bso31I GGTCTC 1 cut(s) 698
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 2 cut(s) 397, 554
Bsp143I GATC 3 cut(s) 42, 337, 478
Bsp19I CCATGG 1 cut(s) 609
BspANI GGCC 2 cut(s) 407, 676
BspCNI CTCAG 4 cut(s) 115, 220, 486, 661
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 650, 675
BspMI ACCTGC 2 cut(s) 43, 459
BspQI GCTCTTC 1 cut(s) 683
BspT104I TTCGAA 1 cut(s) 686
BspT107I GGYRCC 1 cut(s) 648
BspTNI GGTCTC 1 cut(s) 698
BssECI CCNNGG 4 cut(s) 151, 472, 609, 718
BssMI GATC 3 cut(s) 42, 337, 478
BssT1I CCWWGG 2 cut(s) 472, 609
Bst2UI CCWGG 2 cut(s) 409, 719
Bst6I CTCTTC 2 cut(s) 20, 683
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 4 cut(s) 123, 228, 494, 669
BstDSI CCRYGG 2 cut(s) 151, 609
BstF5I GGATG 3 cut(s) 534, 714, 728
BstHHI GCGC 2 cut(s) 312, 456
BstKTI GATC 3 cut(s) 45, 340, 481
BstMAI GTCTC 2 cut(s) 503, 698
BstMBI GATC 3 cut(s) 42, 337, 478
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 2 cut(s) 409, 719
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 2 cut(s) 407, 717
BstV1I GCAGC 4 cut(s) 502, 572, 575, 588
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 2 cut(s) 337, 478
BstXI CCANNNNNNTGG 2 cut(s) 170, 610
BstYI RGATCY 2 cut(s) 337, 478
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 2 cut(s) 407, 676
BtgI CCRYGG 2 cut(s) 151, 609
BtsCI GGATG 3 cut(s) 534, 714, 728
BtsIMutI CAGTG 2 cut(s) 240, 347
BveI ACCTGC 2 cut(s) 43, 459
Cac8I GCNNGC 1 cut(s) 158
CaiI CAGNNNCTG 1 cut(s) 566
CciI TCATGA 1 cut(s) 625
CfoI GCGC 2 cut(s) 312, 456
Cfr13I GGNCC 3 cut(s) 344, 448, 674
CseI GACGC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 649
CspCI CAANNNNNGTGG 2 cut(s) 527, 562
CviAII CATG 5 cut(s) 164, 544, 610, 626, 694
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 4 cut(s) 123, 228, 494, 669
DpnI GATC 3 cut(s) 44, 339, 480
DpnII GATC 3 cut(s) 42, 337, 478
Eam1104I CTCTTC 2 cut(s) 20, 683
EarI CTCTTC 2 cut(s) 20, 683
Ecl136II GAGCTC 2 cut(s) 395, 552
Eco130I CCWWGG 2 cut(s) 472, 609
Eco24I GRGCYC 2 cut(s) 397, 554
Eco31I GGTCTC 1 cut(s) 698
Eco47I GGWCC 2 cut(s) 344, 448
Eco53kI GAGCTC 2 cut(s) 395, 552
Eco57I CTGAAG 2 cut(s) 44, 305
Eco81I CCTNAGG 1 cut(s) 228
EcoICRI GAGCTC 2 cut(s) 395, 552
EcoO109I RGGNCCY 2 cut(s) 448, 674
EcoRII CCWGG 2 cut(s) 407, 717
EcoT14I CCWWGG 2 cut(s) 472, 609
EcoT38I GRGCYC 2 cut(s) 397, 554
ErhI CCWWGG 2 cut(s) 472, 609
FaeI CATG 5 cut(s) 167, 547, 613, 629, 697
FaiI YATR 9 cut(s) 99, 165, 185, 297, 431, 545, 611, 627, 695
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FatI CATG 5 cut(s) 163, 543, 609, 625, 693
Fnu4HI GCNGC 4 cut(s) 491, 561, 564, 577
FokI GGATG 2 cut(s) 521, 701
FriOI GRGCYC 2 cut(s) 397, 554
Fsp4HI GCNGC 4 cut(s) 491, 561, 564, 577
FspBI CTAG 1 cut(s) 147
FspI TGCGCA 2 cut(s) 311, 455
GlaI GCGC 2 cut(s) 311, 455
GluI GCNGC 4 cut(s) 491, 561, 564, 577
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 2 cut(s) 407, 676
HgaI GACGC 1 cut(s) 455
HhaI GCGC 2 cut(s) 312, 456
Hin1II CATG 5 cut(s) 167, 547, 613, 629, 697
Hin6I GCGC 2 cut(s) 310, 454
HinP1I GCGC 2 cut(s) 310, 454
HinfI GANTC 1 cut(s) 299
HphI GGTGA 2 cut(s) 67, 461
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 5 cut(s) 88, 227, 269, 374, 626
HpyAV CCTTC 6 cut(s) 280, 314, 352, 383, 509, 687
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 367, 401, 560, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 4 cut(s) 123, 228, 494, 669
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 5 cut(s) 167, 547, 613, 629, 697
HspAI GCGC 2 cut(s) 310, 454
KpnI GGTACC 1 cut(s) 652
Kzo9I GATC 3 cut(s) 42, 337, 478
LguI GCTCTTC 1 cut(s) 683
LmnI GCTCC 5 cut(s) 19, 165, 392, 463, 549
Lsp1109I GCAGC 4 cut(s) 502, 572, 575, 588
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 3 cut(s) 55, 274, 467
MalI GATC 3 cut(s) 44, 339, 480
MboI GATC 3 cut(s) 42, 337, 478
MboII GAAGA 8 cut(s) 37, 84, 133, 347, 430, 585, 653, 700
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 2 cut(s) 337, 478
MhlI GDGCHC 2 cut(s) 397, 554
MluCI AATT 1 cut(s) 323
MnlI CCTC 8 cut(s) 118, 143, 206, 223, 439, 489, 633, 664
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 2 cut(s) 483, 528
MspA1I CMGCKG 2 cut(s) 493, 566
MspR9I CCNGG 2 cut(s) 409, 719
MunI CAATTG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 2 cut(s) 409, 719
MwoI GCNNNNNNNGC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 609
NdeII GATC 3 cut(s) 42, 337, 478
NlaIII CATG 5 cut(s) 167, 547, 613, 629, 697
NlaIV GGNNCC 2 cut(s) 650, 675
NmuCI GTSAC 3 cut(s) 55, 274, 467
NsbI TGCGCA 2 cut(s) 311, 455
NspI RCATGY 1 cut(s) 547
NspV TTCGAA 1 cut(s) 686
PagI TCATGA 1 cut(s) 625
PaqCI CACCTGC 1 cut(s) 43
PciI ACATGT 1 cut(s) 543
PciSI GCTCTTC 1 cut(s) 683
PctI GAATGC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 4 cut(s) 492, 562, 565, 578
PpuMI RGGWCCY 1 cut(s) 448
PscI ACATGT 1 cut(s) 543
Psp124BI GAGCTC 2 cut(s) 397, 554
Psp5II RGGWCCY 1 cut(s) 448
Psp6I CCWGG 2 cut(s) 407, 717
PspGI CCWGG 2 cut(s) 407, 717
PspN4I GGNNCC 2 cut(s) 650, 675
PspPI GGNCC 3 cut(s) 344, 448, 674
PspPPI RGGWCCY 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 566
PsuI RGATCY 2 cut(s) 337, 478
PvuII CAGCTG 2 cut(s) 493, 566
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
SacI GAGCTC 2 cut(s) 397, 554
SapI GCTCTTC 1 cut(s) 683
SaqAI TTAA 2 cut(s) 483, 528
SatI GCNGC 4 cut(s) 491, 561, 564, 577
Sau3AI GATC 3 cut(s) 42, 337, 478
Sau96I GGNCC 3 cut(s) 344, 448, 674
ScrFI CCNGG 2 cut(s) 409, 719
SduI GDGCHC 2 cut(s) 397, 554
SfaNI GCATC 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 686
SinI GGWCC 2 cut(s) 344, 448
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 323
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 2 cut(s) 397, 554
StyD4I CCNGG 2 cut(s) 407, 717
StyI CCWWGG 2 cut(s) 472, 609
TaiI ACGT 1 cut(s) 250
TaqI TCGA 4 cut(s) 198, 554, 680, 686
TasI AATT 1 cut(s) 323
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 483, 528
Tru9I TTAA 2 cut(s) 483, 528
TscAI CASTG 2 cut(s) 247, 354
TseFI GTSAC 3 cut(s) 55, 274, 467
TseI GCWGC 4 cut(s) 490, 560, 563, 576
Tsp45I GTSAC 3 cut(s) 55, 274, 467
TspDTI ATGAA 4 cut(s) 114, 312, 642, 703
TspRI CASTG 2 cut(s) 247, 354
VpaK11BI GGWCC 2 cut(s) 344, 448
XceI RCATGY 1 cut(s) 547
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.