pycom02g16120
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0009106
Physical Location & Seq
Reverse (-)
13165889 .. 13167419
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16120.2

Sequence Viewer

Length: 291 bp
ATGGAGGACCTGCGCAAAAAGGAGCGTCACCTTGGAGACCTCAACAAGCAGCTGAGGGTCAAGCTTGAGGAAGAAGGGCAGAATCTGAATGTCATTCAAAACATGTGGAGCTCAGATGCAGCGGCTGGAAGTAGCAACTTTTCTTTGCATTCTTCACAAACCAACCCCATGGACTGTACACCTGAACCTGTCATGCAAATGGGGTACCATCAGTACCATCCTGCCGAGGGATCATCTATTCCAAAGAGCTTGACTGGTGAGACCAACTTCATCCAAGGATGGGTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

97

Amino Acids

10.82

Weight (kDa)

5.44

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 18
Acc65I GGTACC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 204
AciI CCGC 1 cut(s) 122
AclWI GGATC 1 cut(s) 238
AfaI GTAC 3 cut(s) 178, 206, 215
AfiI CCNNNNNNNGG 2 cut(s) 227, 280
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 1 cut(s) 98
AjuI GAANNNNNNNTTGG 1 cut(s) 267
AluBI AGCT 4 cut(s) 52, 64, 111, 249
AluI AGCT 4 cut(s) 52, 64, 111, 249
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 2 cut(s) 30, 254
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 2 cut(s) 85, 125
ApeKI GCWGC 2 cut(s) 49, 119
Asp718I GGTACC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 20, 269
AvaII GGWCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 204
BanII GRGCYC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 113
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 61, 131
BccI CCATC 3 cut(s) 216, 225, 273
BcoDI GTCTC 2 cut(s) 30, 254
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 3 cut(s) 50, 120, 123
BlsI GCNGC 3 cut(s) 51, 121, 124
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 206
BmsI GCATC 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 86
BsaI GGTCTC 2 cut(s) 30, 254
BsaJI CCNNGG 4 cut(s) 31, 168, 225, 274
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 280
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 4 cut(s) 31, 168, 225, 274
BseGI GGATG 3 cut(s) 217, 270, 284
BseLI CCNNNNNNNGG 2 cut(s) 227, 280
BseMII CTCAG 2 cut(s) 44, 126
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 2 cut(s) 61, 131
BshNI GGYRCC 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 227, 280
BsmAI GTCTC 2 cut(s) 30, 254
BsmI GAATGC 1 cut(s) 148
Bso31I GGTCTC 2 cut(s) 30, 254
Bsp1286I GDGCHC 1 cut(s) 113
Bsp1407I TGTACA 1 cut(s) 176
Bsp143I GATC 1 cut(s) 230
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 45, 125
BspLI GGNNCC 1 cut(s) 206
BspMI ACCTGC 1 cut(s) 18
BspPI GGATC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 204
BspTNI GGTCTC 2 cut(s) 30, 254
BsrGI TGTACA 1 cut(s) 176
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 4 cut(s) 31, 168, 225, 274
BssMI GATC 1 cut(s) 230
BssT1I CCWWGG 3 cut(s) 31, 168, 274
Bst4CI ACNGT 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 53, 112
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 3 cut(s) 217, 270, 284
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 2 cut(s) 30, 254
BstMBI GATC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 61, 131
BstXI CCANNNNNNTGG 1 cut(s) 169
BtgI CCRYGG 1 cut(s) 168
BtsCI GGATG 3 cut(s) 217, 270, 284
BveI ACCTGC 1 cut(s) 18
CaiI CAGNNNCTG 2 cut(s) 85, 125
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 14
Csp6I GTAC 3 cut(s) 177, 205, 214
CspCI CAANNNNNGTGG 2 cut(s) 86, 121
CviAII CATG 3 cut(s) 103, 169, 193
CviJI RGCY 5 cut(s) 52, 64, 111, 125, 249
CviKI_1 RGCY 5 cut(s) 52, 64, 111, 125, 249
CviQI GTAC 3 cut(s) 177, 205, 214
DdeI CTNAG 2 cut(s) 53, 112
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 111
Eco130I CCWWGG 3 cut(s) 31, 168, 274
Eco24I GRGCYC 1 cut(s) 113
Eco31I GGTCTC 2 cut(s) 30, 254
Eco47I GGWCC 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 31, 168, 274
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 3 cut(s) 31, 168, 274
FaeI CATG 3 cut(s) 106, 172, 196
FaiI YATR 3 cut(s) 104, 170, 194
FatI CATG 3 cut(s) 102, 168, 192
Fnu4HI GCNGC 3 cut(s) 50, 120, 123
FokI GGATG 2 cut(s) 204, 257
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 3 cut(s) 50, 120, 123
FspI TGCGCA 1 cut(s) 14
GlaI GCGC 1 cut(s) 14
GluI GCNGC 3 cut(s) 50, 120, 123
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 15
Hin1II CATG 3 cut(s) 106, 172, 196
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 1 cut(s) 82
HphI GGTGA 2 cut(s) 20, 269
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 87, 115, 290
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 119, 148, 196
HpyF3I CTNAG 2 cut(s) 53, 112
Hsp92II CATG 3 cut(s) 106, 172, 196
HspAI GCGC 1 cut(s) 13
KpnI GGTACC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 22, 108
LpnPI CCDG 6 cut(s) 23, 111, 195, 201, 234, 240
Lsp1109I GCAGC 2 cut(s) 61, 131
LweI GCATC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 2 cut(s) 83, 144
MhlI GDGCHC 1 cut(s) 113
MnlI CCTC 4 cut(s) 48, 50, 61, 220
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 2 cut(s) 52, 122
Mva1269I GAATGC 1 cut(s) 148
NcoI CCATGG 1 cut(s) 168
NdeII GATC 1 cut(s) 230
NlaIII CATG 3 cut(s) 106, 172, 196
NlaIV GGNNCC 1 cut(s) 206
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 26
NsbI TGCGCA 1 cut(s) 14
NspI RCATGY 1 cut(s) 106
PciI ACATGT 1 cut(s) 102
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 3 cut(s) 51, 121, 124
PpuMI RGGWCCY 1 cut(s) 7
PscI ACATGT 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 113
Psp5II RGGWCCY 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 7
PspPPI RGGWCCY 1 cut(s) 7
PstNI CAGNNNCTG 2 cut(s) 85, 125
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 3 cut(s) 178, 206, 215
RsaNI GTAC 3 cut(s) 177, 205, 214
RseI CAYNNNNRTG 1 cut(s) 197
SacI GAGCTC 1 cut(s) 113
SatI GCNGC 3 cut(s) 50, 120, 123
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 7
SduI GDGCHC 1 cut(s) 113
SetI ASST 9 cut(s) 12, 33, 42, 54, 66, 113, 184, 190, 251
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SsiI CCGC 1 cut(s) 122
SstI GAGCTC 1 cut(s) 113
StyI CCWWGG 3 cut(s) 31, 168, 274
TaaI ACNGT 1 cut(s) 176
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 82
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 2 cut(s) 49, 119
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 7
XceI RCATGY 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.