Rh1BG205100
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009106
Physical Location & Seq
Forward (+)
32362086 .. 32365395
3310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG205100.1

Sequence Viewer

Length: 438 bp
ATGGCAAGGACTGGCGTGCTGCATTTGCTTGGGGAAGACCTTGGACCACTGAGTGTGAAGGAGTTGCAAAATCTTGAAAAACAGCTTGAAGGAGCTCTTACACAAGCCAGACAAAGGAAGACACAGATTATGATTGAACAAATGGAACACCTGCGCAAAAAGGAGCGACAGCTTGGAGACCTTAACCTGCAGCTTAGGGATAAGCTTCAGAAGGAGGGTGAAAATCTCAAAGCCATTCAAGACTTCTGGAGCTCTAATAGTGCAGCAGCTGGGAATAGCAACTTCTTGCATTCTTCACAAGCCAGCCACATTGATCCCCCACCTGAACCTATCTTACAAATTGGGTACCATCACTATGTTGCTGCTGAATCCGCAGATGTTCCGAAGAGCATGGCCATGGCTGCCGAGACCAACTTCATCCAGGGATGGGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

145

Amino Acids

16.24

Weight (kDa)

6.05

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 7 - 70 9.1e-20 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 159
Acc16I TGCGCA 1 cut(s) 155
Acc36I ACCTGC 2 cut(s) 159, 195
Acc65I GGTACC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 345
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 191
AdeI CACNNNGTG 1 cut(s) 53
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 114, 427
AgsI TTSAA 4 cut(s) 77, 89, 137, 239
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 7 cut(s) 85, 95, 172, 193, 205, 252, 269
AluI AGCT 7 cut(s) 85, 95, 172, 193, 205, 252, 269
Alw21I GWGCWC 2 cut(s) 97, 254
Alw26I GTCTC 2 cut(s) 171, 401
AlwI GGATC 1 cut(s) 308
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 6 cut(s) 19, 190, 263, 266, 362, 401
Asp718I GGTACC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 2 cut(s) 97, 254
BbsI GAAGAC 2 cut(s) 42, 125
Bbv12I GWGCWC 2 cut(s) 97, 254
BbvI GCAGC 6 cut(s) 6, 202, 275, 278, 349, 388
BccI CCATC 2 cut(s) 357, 420
BciT130I CCWGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 171, 401
BfmI CTRYAG 1 cut(s) 188
BfuAI ACCTGC 2 cut(s) 159, 195
BisI GCNGC 6 cut(s) 20, 191, 264, 267, 363, 402
BlsI GCNGC 6 cut(s) 21, 192, 265, 268, 364, 403
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 422
BpiI GAAGAC 2 cut(s) 42, 125
BpmI CTGGAG 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 194
BsaI GGTCTC 2 cut(s) 171, 401
BsaJI CCNNGG 3 cut(s) 40, 396, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 427
Bse1I ACTGG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 3 cut(s) 40, 396, 421
BseGI GGATG 2 cut(s) 417, 431
BseLI CCNNNNNNNGG 2 cut(s) 114, 427
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 6 cut(s) 6, 202, 275, 278, 349, 388
BseYI CCCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 97, 254
BslI CCNNNNNNNGG 2 cut(s) 114, 427
BsmAI GTCTC 2 cut(s) 171, 401
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 2 cut(s) 171, 401
Bsp1286I GDGCHC 2 cut(s) 97, 254
Bsp143I GATC 1 cut(s) 313
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 347
BspMAI CTGCAG 1 cut(s) 192
BspMI ACCTGC 2 cut(s) 159, 195
BspPI GGATC 1 cut(s) 308
BspQI GCTCTTC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 345
BspTNI GGTCTC 2 cut(s) 171, 401
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 40, 396, 421
BssMI GATC 1 cut(s) 313
BssT1I CCWWGG 2 cut(s) 40, 396
Bst2UI CCWGG 1 cut(s) 422
Bst6I CTCTTC 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 17, 304
BstDEI CTNAG 2 cut(s) 50, 194
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 417, 431
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 2 cut(s) 171, 401
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 3 cut(s) 25, 371, 401
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 420
BstSFI CTRYAG 1 cut(s) 188
BstV1I GCAGC 6 cut(s) 6, 202, 275, 278, 349, 388
BstV2I GAAGAC 2 cut(s) 42, 125
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 417, 431
BtsIMutI CAGTG 1 cut(s) 47
BveI ACCTGC 2 cut(s) 159, 195
Cac8I GCNNGC 2 cut(s) 17, 304
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 346
CviAII CATG 2 cut(s) 391, 397
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 50, 194
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DraIII CACNNNGTG 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Ecl136II GAGCTC 2 cut(s) 95, 252
Eco130I CCWWGG 2 cut(s) 40, 396
Eco24I GRGCYC 2 cut(s) 97, 254
Eco31I GGTCTC 2 cut(s) 171, 401
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 2 cut(s) 95, 252
Eco57I CTGAAG 1 cut(s) 191
EcoICRI GAGCTC 2 cut(s) 95, 252
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 2 cut(s) 40, 396
EcoT38I GRGCYC 2 cut(s) 97, 254
ErhI CCWWGG 2 cut(s) 40, 396
FaeI CATG 2 cut(s) 394, 400
FaiI YATR 4 cut(s) 131, 357, 392, 398
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 2 cut(s) 390, 396
Fnu4HI GCNGC 6 cut(s) 20, 191, 264, 267, 363, 402
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 2 cut(s) 97, 254
Fsp4HI GCNGC 6 cut(s) 20, 191, 264, 267, 363, 402
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 1 cut(s) 155
GluI GCNGC 6 cut(s) 20, 191, 264, 267, 363, 402
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 1 cut(s) 395
HhaI GCGC 1 cut(s) 156
Hin1II CATG 2 cut(s) 394, 400
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 368
HphI GGTGA 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 210, 384
Hpy188III TCNNGA 3 cut(s) 74, 239, 247
HpyAV CCTTC 3 cut(s) 52, 83, 205
HpyCH4V TGCA 5 cut(s) 22, 67, 190, 263, 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 371, 401
HpyF3I CTNAG 2 cut(s) 50, 194
Hsp92II CATG 2 cut(s) 394, 400
HspAI GCGC 1 cut(s) 154
KpnI GGTACC 1 cut(s) 349
Kzo9I GATC 1 cut(s) 313
LguI GCTCTTC 1 cut(s) 380
LmnI GCTCC 3 cut(s) 92, 163, 249
LpnPI CCDG 9 cut(s) 121, 164, 200, 232, 255, 316, 336, 407, 434
Lsp1109I GCAGC 6 cut(s) 6, 202, 275, 278, 349, 388
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 4 cut(s) 47, 130, 285, 397
MhlI GDGCHC 2 cut(s) 97, 254
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 1 cut(s) 339
MluNI TGGCCA 1 cut(s) 395
MnlI CCTC 1 cut(s) 208
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 2 cut(s) 354, 395
Msp20I TGGCCA 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 3 cut(s) 25, 371, 401
NcoI CCATGG 1 cut(s) 396
NdeII GATC 1 cut(s) 313
NlaIII CATG 2 cut(s) 394, 400
NlaIV GGNNCC 1 cut(s) 347
NmeAIII GCCGAG 1 cut(s) 430
NsbI TGCGCA 1 cut(s) 155
PaqCI CACCTGC 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 380
PctI GAATGC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 6 cut(s) 21, 192, 265, 268, 364, 403
Psp124BI GAGCTC 2 cut(s) 97, 254
Psp6I CCWGG 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 1 cut(s) 44
PsrI GAACNNNNNNTAC 2 cut(s) 318, 350
PstI CTGCAG 1 cut(s) 192
PstNI CAGNNNCTG 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 354, 395
SacI GAGCTC 2 cut(s) 97, 254
SapI GCTCTTC 1 cut(s) 380
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 6 cut(s) 20, 191, 264, 267, 363, 402
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 2 cut(s) 97, 254
SfcI CTRYAG 1 cut(s) 188
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 354, 395
Sse9I AATT 1 cut(s) 339
SsiI CCGC 1 cut(s) 372
SstI GAGCTC 2 cut(s) 97, 254
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 2 cut(s) 40, 396
TasI AATT 1 cut(s) 339
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 54
TseI GCWGC 6 cut(s) 19, 190, 263, 266, 362, 401
TspDTI ATGAA 1 cut(s) 406
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.