Rh1DG232100
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009106
Physical Location & Seq
Forward (+)
44510279 .. 44529425
19147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG232100.1

Sequence Viewer

Length: 567 bp
ATGATACCCCGCTTGGCGGCAGTCTCAGCACATCAAGGACATGGTGCATTGCCCGAGTCCCCAAAGTTTCTGATGCGACAGAACCTACATACCATTTCCTGGTGTTCGTCTCCTGTGGGACTCCGCGTGGCTCTGGCTGCACGAACAGAGAGCATAGAGAGTTCAAGAATGATGCTAAACTCTTTGCTTGAAGGTGCGGGCCATAATAAGGTCAAATCAGACCCGACCGGGCATTTGCTTGGGGAAGACCTTGGACCACTGAGTGTGAAGGAGTTGCAAAATCTTGAAAAACAGCTTGAAGGAGCTCTTACACAAGCCAGACAAAGGAAGACACAGATTATGATTGAACAAATGGAACACCTGCGCAAAAAGGAGCGACAGCTTGGAGACCTTAACCTGCAGCTTAGGGATAAGCTTCAGAAGGAGGGTGAAAATCTCAAAGCCATTCAAGACTTCTGGAGCTCTAATAGTGCAGCAGCTGGGAATAGCAACTTCTTGCATTCTTCACAAGCCAGCCACATTGATCCCCCACCTGAACCTATCTTACAAATTGGGTACATGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

188

Amino Acids

20.85

Weight (kDa)

7.96

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 78 - 140 1.2e-19 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 369
Acc16I TGCGCA 1 cut(s) 365
Acc36I ACCTGC 2 cut(s) 369, 405
AccB7I CCANNNNNTGG 1 cut(s) 99
AccII CGCG 1 cut(s) 126
AciI CCGC 4 cut(s) 10, 17, 124, 197
AclWI GGATC 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 401
AdeI CACNNNGTG 1 cut(s) 263
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 4 cut(s) 16, 99, 208, 324
AgsI TTSAA 6 cut(s) 165, 191, 287, 299, 347, 449
AjnI CCWGG 1 cut(s) 98
AluBI AGCT 7 cut(s) 295, 305, 382, 403, 415, 462, 479
AluI AGCT 7 cut(s) 295, 305, 382, 403, 415, 462, 479
Alw21I GWGCWC 2 cut(s) 307, 464
Alw26I GTCTC 3 cut(s) 28, 114, 381
AlwI GGATC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 4 cut(s) 137, 400, 473, 476
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 199, 254
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 1 cut(s) 254
BanII GRGCYC 2 cut(s) 307, 464
BbsI GAAGAC 2 cut(s) 252, 335
Bbv12I GWGCWC 2 cut(s) 307, 464
BbvI GCAGC 4 cut(s) 124, 412, 485, 488
BciT130I CCWGG 1 cut(s) 100
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 3 cut(s) 28, 114, 381
BfaI CTAG 1 cut(s) 565
BfmI CTRYAG 1 cut(s) 398
BfuAI ACCTGC 2 cut(s) 369, 405
BisI GCNGC 5 cut(s) 18, 138, 401, 474, 477
BlsI GCNGC 5 cut(s) 19, 139, 402, 475, 478
Bme1390I CCNGG 2 cut(s) 100, 229
Bme18I GGWCC 1 cut(s) 254
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 2 cut(s) 199, 254
BmrFI CCNGG 2 cut(s) 100, 229
BmsI GCATC 2 cut(s) 63, 162
BpiI GAAGAC 2 cut(s) 252, 335
BpmI CTGGAG 1 cut(s) 478
Bpu10I CCTNAGC 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 99, 208, 324
Bse3DI GCAATG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 4 cut(s) 16, 99, 208, 324
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 39, 251
BseXI GCAGC 4 cut(s) 124, 412, 485, 488
BseYI CCCAGC 1 cut(s) 479
BsgI GTGCAG 2 cut(s) 123, 492
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 2 cut(s) 307, 464
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 43, 132
BslI CCNNNNNNNGG 4 cut(s) 16, 99, 208, 324
BsmAI GTCTC 3 cut(s) 28, 114, 381
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 43, 132
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 381
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 307, 464
Bsp143I GATC 1 cut(s) 523
BspACI CCGC 4 cut(s) 10, 17, 124, 197
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 38, 252
BspFNI CGCG 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 402
BspMI ACCTGC 2 cut(s) 369, 405
BspPI GGATC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 523
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 199, 514
BstDEI CTNAG 3 cut(s) 25, 260, 404
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 1 cut(s) 526
BstMAI GTCTC 3 cut(s) 28, 114, 381
BstMBI GATC 1 cut(s) 523
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 2 cut(s) 26, 137
BstNI CCWGG 1 cut(s) 100
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 98, 227
BstSFI CTRYAG 1 cut(s) 398
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 4 cut(s) 124, 412, 485, 488
BstV2I GAAGAC 2 cut(s) 252, 335
BsuRI GGCC 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 257
BveI ACCTGC 2 cut(s) 369, 405
Cac8I GCNNGC 2 cut(s) 199, 514
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 199, 254
Csp6I GTAC 1 cut(s) 556
CviAII CATG 2 cut(s) 41, 559
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 3 cut(s) 25, 260, 404
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
DraIII CACNNNGTG 1 cut(s) 263
Ecl136II GAGCTC 2 cut(s) 305, 462
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 2 cut(s) 307, 464
Eco31I GGTCTC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 2 cut(s) 305, 462
Eco57I CTGAAG 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 53
EcoICRI GAGCTC 2 cut(s) 305, 462
EcoRII CCWGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 2 cut(s) 307, 464
ErhI CCWWGG 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 2 cut(s) 44, 562
FaiI YATR 6 cut(s) 42, 90, 155, 204, 341, 560
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 2 cut(s) 43, 132
FatI CATG 2 cut(s) 40, 558
FauI CCCGC 2 cut(s) 17, 190
Fnu4HI GCNGC 5 cut(s) 18, 138, 401, 474, 477
FriOI GRGCYC 2 cut(s) 307, 464
Fsp4HI GCNGC 5 cut(s) 18, 138, 401, 474, 477
FspBI CTAG 1 cut(s) 565
FspI TGCGCA 1 cut(s) 365
GlaI GCGC 1 cut(s) 365
GluI GCNGC 5 cut(s) 18, 138, 401, 474, 477
GsaI CCCAGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 478
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 366
Hin1II CATG 2 cut(s) 44, 562
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 2 cut(s) 56, 120
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 440
Hpy188I TCNGA 3 cut(s) 72, 220, 420
Hpy188III TCNNGA 4 cut(s) 165, 284, 449, 457
HpyAV CCTTC 4 cut(s) 185, 262, 293, 415
HpyCH4V TGCA 7 cut(s) 47, 140, 277, 400, 473, 499, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 137
HpyF3I CTNAG 3 cut(s) 25, 260, 404
Hsp92II CATG 2 cut(s) 44, 562
HspAI GCGC 1 cut(s) 364
Kzo9I GATC 1 cut(s) 523
LmnI GCTCC 3 cut(s) 302, 373, 459
Lsp1109I GCAGC 4 cut(s) 124, 412, 485, 488
LweI GCATC 2 cut(s) 63, 162
MaeI CTAG 1 cut(s) 565
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MboII GAAGA 3 cut(s) 257, 340, 495
MhlI GDGCHC 2 cut(s) 307, 464
MluCI AATT 1 cut(s) 549
MlyI GAGTC 2 cut(s) 65, 114
MnlI CCTC 1 cut(s) 418
MseI TTAA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 100, 229
Mva1269I GAATGC 1 cut(s) 499
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 26, 137
NciI CCSGG 1 cut(s) 229
NdeII GATC 1 cut(s) 523
NlaIII CATG 2 cut(s) 44, 562
NsbI TGCGCA 1 cut(s) 365
NspI RCATGY 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 369
PctI GAATGC 1 cut(s) 499
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 5 cut(s) 19, 139, 402, 475, 478
PleI GAGTC 2 cut(s) 64, 114
PpsI GAGTC 2 cut(s) 64, 114
Psp124BI GAGCTC 2 cut(s) 307, 464
Psp6I CCWGG 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 479
PspGI CCWGG 1 cut(s) 98
PspPI GGNCC 2 cut(s) 199, 254
PsrI GAACNNNNNNTAC 2 cut(s) 528, 560
PstI CTGCAG 1 cut(s) 402
PstNI CAGNNNCTG 1 cut(s) 479
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SacI GAGCTC 2 cut(s) 307, 464
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 5 cut(s) 18, 138, 401, 474, 477
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 2 cut(s) 199, 254
SchI GAGTC 2 cut(s) 65, 114
ScrFI CCNGG 2 cut(s) 100, 229
SduI GDGCHC 2 cut(s) 307, 464
SfaNI GCATC 2 cut(s) 63, 162
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 254
Sse9I AATT 1 cut(s) 549
SsiI CCGC 4 cut(s) 10, 17, 124, 197
SspMI CTAG 1 cut(s) 565
SstI GAGCTC 2 cut(s) 307, 464
StyD4I CCNGG 2 cut(s) 98, 227
StyI CCWWGG 1 cut(s) 250
TasI AATT 1 cut(s) 549
TauI GCSGC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 264
TseI GCWGC 4 cut(s) 137, 400, 473, 476
TspRI CASTG 1 cut(s) 264
Van91I CCANNNNNTGG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 254
XceI RCATGY 1 cut(s) 562
XspI CTAG 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.