Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001144.1

Orthogroup ID

OG0009106

Physical Location & Seq

Genomic Coordinates Reverse (-)

28072 .. 33192

Gene Structure 5121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001144.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggggaggggaagagtggagctcaagagaatagagaacaagatcaaccgccaggtgactttttcaaagcggagaaatggtttgctcaaaaaagcatatgagctctctgtgctttgcgatgctgaggttgcccttatcgtcttctctagtcgaggcaagctctatgagttttcgagtgctgggcatttgcttggggaagaccttggaccactgagtgtgaaggagttgcaaaatcttgaaaaacagcttgaaggagctcttacacaagccagacaaaggaaggagcgacagcttggagaccttaacctgcagcttagggataagcttcagaaggagggggaaaatctcaaagccattcaagacttctggagctctaatagtgcagcagctgggaatagcaacttcttgcattcttcacaagccagccacattgatcccgcacctgaacccatcttacaaattgggtaccatcactatgttgctgctgaatccgcagatgttccaaagagcatggccttggctgctgagaccaacttcatccagggatgggtgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

185

Amino Acids

20.61

Weight (kDa)

8.65

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45650 AT3G61120
fragaria_vesca	FvH4_7g12670 FvH4_7g12670 FvH4_7g12680
malus_domestica	MD02G1197600.v1.1
prunus_persica	Prupe.2G151000_v2.0.a1
pyrus_communis	pycom02g16120
rosa_chinensis	RchiOBHm_Chr1g0351671
rosa_laevigata	RLG00000028391
rosa_multiflora	Rmu_sc0001144.1_g000005
rosa_roxburghii	Rroxscaffold_4G00303630
rosa_rugosa	Rorug01G0220100 Rorug01G0220200 Rorug01G0220300 Rorug01G0220400 Rorug01G0220500
rosa_samantha	Rh1AG234500 Rh1BG205100 Rh1CG219200 Rh1DG232100
rosa_wichuraiana	Rw1G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	315
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AciI	CCGC	4 cut(s)	49, 70, 438, 492
AclWI	GGATC	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	311
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	276, 547
AgsI	TTSAA	4 cut(s)	66, 239, 251, 359
AjnI	CCWGG	2 cut(s)	51, 540
Alw21I	GWGCWC	4 cut(s)	24, 105, 259, 374
Alw26I	GTCTC	2 cut(s)	291, 521
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	513
ApeKI	GCWGC	5 cut(s)	310, 383, 386, 482, 521
Asp718I	GGTACC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	465
BanII	GRGCYC	4 cut(s)	24, 105, 259, 374
BbsI	GAAGAC	2 cut(s)	133, 204
Bbv12I	GWGCWC	4 cut(s)	24, 105, 259, 374
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	322, 395, 398, 469, 508
BccI	CCATC	3 cut(s)	458, 477, 540
BciT130I	CCWGG	2 cut(s)	53, 542
BcoDI	GTCTC	2 cut(s)	291, 521
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	315
BisI	GCNGC	5 cut(s)	311, 384, 387, 483, 522
BlsI	GCNGC	5 cut(s)	312, 385, 388, 484, 523
Bme1390I	CCNGG	2 cut(s)	53, 542
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	2 cut(s)	53, 542
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	2 cut(s)	133, 204
BplI	GAGNNNNNCTC	3 cut(s)	38, 144, 176
BpmI	CTGGAG	1 cut(s)	388
Bpu10I	CCTNAGC	2 cut(s)	123, 314
BpuEI	CTTGAG	1 cut(s)	8
BsaI	GGTCTC	2 cut(s)	291, 521
BsaJI	CCNNGG	3 cut(s)	202, 516, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 547
BseBI	CCWGG	2 cut(s)	53, 542
BseDI	CCNNGG	3 cut(s)	202, 516, 541
BseGI	GGATG	2 cut(s)	537, 551
BseLI	CCNNNNNNNGG	2 cut(s)	276, 547
BseMII	CTCAG	3 cut(s)	114, 203, 516
BseXI	GCAGC	5 cut(s)	322, 395, 398, 469, 508
BseYI	CCCAGC	2 cut(s)	179, 389
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	515
BshNI	GGYRCC	1 cut(s)	465
BsiHKAI	GWGCWC	4 cut(s)	24, 105, 259, 374
BslI	CCNNNNNNNGG	2 cut(s)	276, 547
BsmAI	GTCTC	2 cut(s)	291, 521
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	515
Bso31I	GGTCTC	2 cut(s)	291, 521
Bsp1286I	GDGCHC	4 cut(s)	24, 105, 259, 374
Bsp143I	GATC	2 cut(s)	42, 433
BspACI	CCGC	4 cut(s)	49, 70, 438, 492
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	3 cut(s)	115, 204, 517
BspLI	GGNNCC	1 cut(s)	467
BspMAI	CTGCAG	1 cut(s)	312
BspMI	ACCTGC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	465
BspTNI	GGTCTC	2 cut(s)	291, 521
BssECI	CCNNGG	3 cut(s)	202, 516, 541
BssMI	GATC	2 cut(s)	42, 433
BssT1I	CCWWGG	2 cut(s)	202, 516
Bst2UI	CCWGG	2 cut(s)	53, 542
Bst6I	CTCTTC	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	158, 424
BstDEI	CTNAG	4 cut(s)	123, 212, 314, 525
BstF5I	GGATG	2 cut(s)	537, 551
BstKTI	GATC	2 cut(s)	45, 436
BstMAI	GTCTC	2 cut(s)	291, 521
BstMBI	GATC	2 cut(s)	42, 433
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 128, 491, 521
BstNI	CCWGG	2 cut(s)	53, 542
BstSCI	CCNGG	2 cut(s)	51, 540
BstSFI	CTRYAG	1 cut(s)	308
BstV1I	GCAGC	5 cut(s)	322, 395, 398, 469, 508
BstV2I	GAAGAC	2 cut(s)	133, 204
BsuRI	GGCC	1 cut(s)	515
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	537, 551
BtsIMutI	CAGTG	1 cut(s)	209
BveI	ACCTGC	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	158, 424
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	1 cut(s)	511
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	4 cut(s)	123, 212, 314, 525
DpnI	GATC	2 cut(s)	44, 435
DpnII	GATC	2 cut(s)	42, 433
DraIII	CACNNNGTG	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Ecl136II	GAGCTC	4 cut(s)	22, 103, 257, 372
Eco130I	CCWWGG	2 cut(s)	202, 516
Eco24I	GRGCYC	4 cut(s)	24, 105, 259, 374
Eco31I	GGTCTC	2 cut(s)	291, 521
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	4 cut(s)	22, 103, 257, 372
Eco57I	CTGAAG	1 cut(s)	311
EcoICRI	GAGCTC	4 cut(s)	22, 103, 257, 372
EcoRII	CCWGG	2 cut(s)	51, 540
EcoT14I	CCWWGG	2 cut(s)	202, 516
EcoT38I	GRGCYC	4 cut(s)	24, 105, 259, 374
ErhI	CCWWGG	2 cut(s)	202, 516
FaeI	CATG	1 cut(s)	514
FaiI	YATR	5 cut(s)	97, 99, 165, 477, 512
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	1 cut(s)	510
FauI	CCCGC	1 cut(s)	445
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	5 cut(s)	311, 384, 387, 483, 522
FokI	GGATG	1 cut(s)	524
FriOI	GRGCYC	4 cut(s)	24, 105, 259, 374
Fsp4HI	GCNGC	5 cut(s)	311, 384, 387, 483, 522
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	5 cut(s)	311, 384, 387, 483, 522
GsaI	CCCAGC	2 cut(s)	183, 393
GsuI	CTGGAG	1 cut(s)	388
HaeIII	GGCC	1 cut(s)	515
Hin1II	CATG	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	1 cut(s)	488
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	4 cut(s)	25, 236, 359, 367
HpyAV	CCTTC	4 cut(s)	214, 245, 274, 325
HpyCH4V	TGCA	4 cut(s)	229, 310, 383, 409
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 128, 491, 521
HpyF3I	CTNAG	4 cut(s)	123, 212, 314, 525
Hsp92II	CATG	1 cut(s)	514
KpnI	GGTACC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	42, 433
LmnI	GCTCC	4 cut(s)	19, 254, 283, 369
Lsp1109I	GCAGC	5 cut(s)	322, 395, 398, 469, 508
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	44, 435
MboI	GATC	2 cut(s)	42, 433
MboII	GAAGA	4 cut(s)	24, 133, 209, 405
MhlI	GDGCHC	4 cut(s)	24, 105, 259, 374
MluCI	AATT	1 cut(s)	459
MnlI	CCTC	3 cut(s)	118, 146, 328
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	389
MspR9I	CCNGG	2 cut(s)	53, 542
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	2 cut(s)	53, 542
MwoI	GCNNNNNNNGC	4 cut(s)	109, 128, 491, 521
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	2 cut(s)	42, 433
NlaIII	CATG	1 cut(s)	514
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	55
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	5 cut(s)	312, 385, 388, 484, 523
Psp124BI	GAGCTC	4 cut(s)	24, 105, 259, 374
Psp6I	CCWGG	2 cut(s)	51, 540
PspFI	CCCAGC	2 cut(s)	179, 389
PspGI	CCWGG	2 cut(s)	51, 540
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	206
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	4 cut(s)	24, 105, 259, 374
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	5 cut(s)	311, 384, 387, 483, 522
Sau3AI	GATC	2 cut(s)	42, 433
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	53, 542
SduI	GDGCHC	4 cut(s)	24, 105, 259, 374
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	459
SsiI	CCGC	4 cut(s)	49, 70, 438, 492
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	4 cut(s)	24, 105, 259, 374
StyD4I	CCNGG	2 cut(s)	51, 540
StyI	CCWWGG	2 cut(s)	202, 516
TaqI	TCGA	2 cut(s)	151, 173
TasI	AATT	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	310, 383, 386, 482, 521
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	526
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	206
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.