Rorug01G0220100
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009106
Physical Location & Seq
Forward (+)
31445588 .. 31448520
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0220100.1

Sequence Viewer

Length: 1002 bp
ATGTTGCAATCAGCAACAGTGGGCAAGAACAAGAAGAGGAAGTCAACAAAGGCAAGCCAGCCACGCCCACAAACACGTCTACAATCACAAGCACAGTCAGAACATGCATTCGTCACCCCAACTAGGGGGCAAATAGAAATTTTTGGTGAAGCAGGTCTGAATGTTTCTTATGCACGGGCCAGGAAAACCCGTGGCATTACACAGGGGTTGGGAACTCAAGCTCTGATCAATGCTTGCAAGCAGAGGATTCCAATCCGTACGAATGGTGAGCACAAGCTCCCCCAGAATGTTCGAGCCAATATTAAGTTTAGGTTGGAGATTGGGATACAAACGCGTCAGAATGCTCCACTTATGGTCAAGCGTTGGAAAGAAGTCTCTACATCGGATAAGGAAAAAATCACCAAGGCCTTGGCGAAACGTTGCAAGATAAACTCTGCTAACCGGAATAAGCAAGAATACGATCATCTTGAGAGTTCACCGCCCTACCTGAAACATATAGCAGCTGCACAAGAGATGCCAGTAGAATCAACAAAAAAGGATTCTGAGTATGTTGATGATGAGGAAGATGTTGATGATAATGGTAATGATGACGATGGTGATAATGATGTTGATTATAATGTTGATGATGATTATGTTGGTTATAATGATCATATTGATGTTAATGATGAGGATGATGTTGATGAAAATGTTGGAAGAAACCTAGAAATTGAGGTTGATGATGTTGAAGAGCGTGGAAATCAAAGTGTATCCACCACTACTGAGAAAAGTAGTGGAAAGAGAAAGCTCTCATCCTTTACCAATGTGCATGTTTCAAAGGAGGTTAGCGATGAAGAATACTTGATGCAATGTTTTGGAATTTTGAACAAGATGGACGAAATTGATGACAACAGTTACTCAAAAGCCTTGAAGCTCTTCCGCGGTGATGCTACTTGGAGAAAGCTGTTTGTGGGAATGCCTGAGAAGAGGAGAAAGAACTTCATCCTCATTCTTTTCTGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

333

Amino Acids

37.85

Weight (kDa)

5.98

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 615, 642
Acc36I ACCTGC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 79
AccII CGCG 2 cut(s) 334, 918
AciI CCGC 3 cut(s) 479, 916, 918
AclI AACGTT 1 cut(s) 418
AcsI RAATTY 2 cut(s) 138, 855
AfaI GTAC 2 cut(s) 259, 997
AfiI CCNNNNNNNGG 3 cut(s) 123, 124, 125
AflIII ACRYGT 2 cut(s) 74, 332
AgsI TTSAA 4 cut(s) 725, 813, 862, 907
AjiI CACGTC 1 cut(s) 77
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 6 cut(s) 221, 277, 503, 784, 910, 940
AluI AGCT 6 cut(s) 221, 277, 503, 784, 910, 940
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 379
AoxI GGCC 2 cut(s) 177, 405
ApeKI GCWGC 2 cut(s) 500, 503
ApoI RAATTY 2 cut(s) 138, 855
Asp700I GAANNNNTTC 1 cut(s) 911
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 7 cut(s) 106, 158, 278, 391, 468, 608, 932
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 490, 512
BccI CCATC 2 cut(s) 587, 862
BciT130I CCWGG 1 cut(s) 181
BciVI GTATCC 2 cut(s) 318, 757
BclI TGATCA 2 cut(s) 225, 646
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 2 cut(s) 123, 701
BfuAI ACCTGC 1 cut(s) 143
BfuI GTATCC 2 cut(s) 318, 757
BisI GCNGC 2 cut(s) 501, 504
BlsI GCNGC 2 cut(s) 502, 505
Bme1390I CCNGG 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 3 cut(s) 504, 831, 913
BpuEI CTTGAG 2 cut(s) 201, 488
BsaBI GATNNNNATC 1 cut(s) 251
BsaJI CCNNGG 4 cut(s) 190, 402, 408, 916
BsaWI WCCGGW 1 cut(s) 441
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 124, 125
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 851
Bse8I GATNNNNATC 1 cut(s) 251
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 4 cut(s) 190, 402, 408, 916
BseGI GGATG 3 cut(s) 676, 788, 978
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 3 cut(s) 123, 124, 125
BseMI GCAATG 1 cut(s) 851
BseMII CTCAG 3 cut(s) 534, 750, 948
BseNI ACTGG 1 cut(s) 518
BseRI GAGGAG 1 cut(s) 979
BseXI GCAGC 2 cut(s) 490, 512
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 2 cut(s) 334, 918
BshFI GGCC 2 cut(s) 179, 407
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 442
BsiWI CGTACG 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 123, 124, 125
BsmAI GTCTC 1 cut(s) 379
BsmI GAATGC 3 cut(s) 107, 346, 957
BsnI GGCC 2 cut(s) 179, 407
Bsp1286I GDGCHC 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 995
Bsp143I GATC 3 cut(s) 225, 460, 646
BspACI CCGC 3 cut(s) 479, 916, 918
BspANI GGCC 2 cut(s) 179, 407
BspCNI CTCAG 3 cut(s) 535, 751, 949
BspFNI CGCG 2 cut(s) 334, 918
BspMI ACCTGC 1 cut(s) 143
BspQI GCTCTTC 2 cut(s) 720, 917
BsrDI GCAATG 1 cut(s) 851
BsrGI TGTACA 1 cut(s) 995
BsrI ACTGG 1 cut(s) 518
BssECI CCNNGG 4 cut(s) 190, 402, 408, 916
BssMI GATC 3 cut(s) 225, 460, 646
BssT1I CCWWGG 2 cut(s) 402, 408
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 3 cut(s) 19, 96, 890
Bst6I CTCTTC 4 cut(s) 29, 720, 917, 956
BstAUI TGTACA 1 cut(s) 995
BstC8I GCNNGC 4 cut(s) 55, 59, 235, 239
BstDEI CTNAG 3 cut(s) 543, 759, 957
BstDSI CCRYGG 2 cut(s) 190, 916
BstF5I GGATG 3 cut(s) 676, 788, 978
BstFNI CGCG 2 cut(s) 334, 918
BstKTI GATC 3 cut(s) 228, 463, 649
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 3 cut(s) 225, 460, 646
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNI CCWGG 1 cut(s) 181
BstNSI RCATGY 2 cut(s) 107, 809
BstSCI CCNGG 1 cut(s) 179
BstUI CGCG 2 cut(s) 334, 918
BstV1I GCAGC 2 cut(s) 490, 512
BstXI CCANNNNNNTGG 1 cut(s) 409
BsuI GTATCC 2 cut(s) 318, 757
BsuRI GGCC 2 cut(s) 179, 407
BtgI CCRYGG 2 cut(s) 190, 916
BtgZI GCGATG 1 cut(s) 840
BtrI CACGTC 1 cut(s) 77
BtsCI GGATG 3 cut(s) 676, 788, 978
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 4 cut(s) 55, 59, 235, 239
Cfr13I GGNCC 1 cut(s) 177
Cfr42I CCGCGG 1 cut(s) 919
CseI GACGC 1 cut(s) 323
Csp6I GTAC 2 cut(s) 258, 996
CviAII CATG 3 cut(s) 104, 806, 999
CviQI GTAC 2 cut(s) 258, 996
DdeI CTNAG 3 cut(s) 543, 759, 957
DpnI GATC 3 cut(s) 227, 462, 648
DpnII GATC 3 cut(s) 225, 460, 646
Eam1104I CTCTTC 4 cut(s) 29, 720, 917, 956
EarI CTCTTC 4 cut(s) 29, 720, 917, 956
Eco130I CCWWGG 2 cut(s) 402, 408
Eco147I AGGCCT 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 2 cut(s) 402, 408
EcoT22I ATGCAT 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 402, 408
FaeI CATG 3 cut(s) 107, 809, 1002
FatI CATG 3 cut(s) 103, 805, 998
FbaI TGATCA 2 cut(s) 225, 646
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 501, 504
FokI GGATG 3 cut(s) 683, 775, 965
Fsp4HI GCNGC 2 cut(s) 501, 504
FspBI CTAG 2 cut(s) 123, 701
GluI GCNGC 2 cut(s) 501, 504
HaeIII GGCC 2 cut(s) 179, 407
HapII CCGG 1 cut(s) 442
HgaI GACGC 1 cut(s) 323
Hin1II CATG 3 cut(s) 107, 809, 1002
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 3 cut(s) 247, 524, 539
HpaII CCGG 1 cut(s) 442
HphI GGTGA 7 cut(s) 106, 158, 278, 391, 468, 608, 932
Hpy166II GTNNAC 3 cut(s) 45, 80, 476
Hpy188I TCNGA 6 cut(s) 100, 159, 225, 339, 385, 544
Hpy188III TCNNGA 1 cut(s) 467
Hpy8I GTNNAC 3 cut(s) 45, 80, 476
HpyCH4III ACNGT 3 cut(s) 19, 96, 890
HpyCH4IV ACGT 2 cut(s) 76, 418
HpyCH4V TGCA 8 cut(s) 7, 107, 173, 237, 423, 506, 805, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 3 cut(s) 543, 759, 957
HpySE526I ACGT 2 cut(s) 76, 418
Hsp92II CATG 3 cut(s) 107, 809, 1002
Ksp22I TGATCA 2 cut(s) 225, 646
KspI CCGCGG 1 cut(s) 919
Kzo9I GATC 3 cut(s) 225, 460, 646
LguI GCTCTTC 2 cut(s) 720, 917
LmnI GCTCC 2 cut(s) 282, 349
Lsp1109I GCAGC 2 cut(s) 490, 512
LweI GCATC 3 cut(s) 504, 831, 913
MaeI CTAG 2 cut(s) 123, 701
MaeII ACGT 2 cut(s) 76, 418
MaeIII GTNAC 2 cut(s) 112, 890
MalI GATC 3 cut(s) 227, 462, 648
MboI GATC 3 cut(s) 225, 460, 646
MboII GAAGA 7 cut(s) 46, 575, 705, 737, 842, 904, 973
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 4 cut(s) 138, 705, 855, 876
MluI ACGCGT 1 cut(s) 332
MmeI TCCRAC 3 cut(s) 294, 344, 670
MnlI CCTC 8 cut(s) 30, 237, 553, 661, 703, 811, 957, 992
Mph1103I ATGCAT 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 911
MseI TTAA 2 cut(s) 303, 660
MslI CAYNNNNRTG 1 cut(s) 654
MspA1I CMGCKG 2 cut(s) 503, 918
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 1 cut(s) 181
Mva1269I GAATGC 3 cut(s) 107, 346, 957
MvaI CCWGG 1 cut(s) 181
MvnI CGCG 2 cut(s) 334, 918
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 3 cut(s) 225, 460, 646
NlaIII CATG 3 cut(s) 107, 809, 1002
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 2 cut(s) 107, 809
PceI AGGCCT 1 cut(s) 407
PciSI GCTCTTC 2 cut(s) 720, 917
PctI GAATGC 3 cut(s) 107, 346, 957
PdmI GAANNNNTTC 1 cut(s) 911
PfeI GAWTC 3 cut(s) 247, 524, 539
Pfl23II CGTACG 1 cut(s) 257
PkrI GCNGC 2 cut(s) 502, 505
PsiI TTATAA 2 cut(s) 615, 642
Psp1406I AACGTT 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspLI CGTACG 1 cut(s) 257
PspPI GGNCC 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 2 cut(s) 259, 997
RsaNI GTAC 2 cut(s) 258, 996
RseI CAYNNNNRTG 1 cut(s) 654
SacII CCGCGG 1 cut(s) 919
SapI GCTCTTC 2 cut(s) 720, 917
SaqAI TTAA 2 cut(s) 303, 660
SatI GCNGC 2 cut(s) 501, 504
Sau3AI GATC 3 cut(s) 225, 460, 646
Sau96I GGNCC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 3 cut(s) 504, 831, 913
Sfr303I CCGCGG 1 cut(s) 919
SgrBI CCGCGG 1 cut(s) 919
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 2 cut(s) 216, 467
SmoI CTYRAG 2 cut(s) 216, 467
Sse9I AATT 4 cut(s) 138, 705, 855, 876
SseBI AGGCCT 1 cut(s) 407
SsiI CCGC 3 cut(s) 479, 916, 918
SspI AATATT 1 cut(s) 301
SspMI CTAG 2 cut(s) 123, 701
StuI AGGCCT 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 2 cut(s) 402, 408
TaaI ACNGT 3 cut(s) 19, 96, 890
TaiI ACGT 2 cut(s) 79, 421
TaqI TCGA 1 cut(s) 292
TasI AATT 4 cut(s) 138, 705, 855, 876
TatI WGTACW 1 cut(s) 995
TfiI GAWTC 3 cut(s) 247, 524, 539
Tru1I TTAA 2 cut(s) 303, 660
Tru9I TTAA 2 cut(s) 303, 660
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 2 cut(s) 500, 503
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 3 cut(s) 696, 843, 967
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 24
XapI RAATTY 2 cut(s) 138, 855
XceI RCATGY 2 cut(s) 107, 809
XmiI GTMKAC 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 911
XspI CTAG 2 cut(s) 123, 701
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.