FvH4_7g12680
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009106
Physical Location & Seq
Forward (+)
11491205 .. 11492045
841 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12680.t1

Sequence Viewer

Length: 294 bp
ATGCCGGCAAAGAAGAAGACGAGTATGTTGTCTGCTATTAGCCCAACAGATCACCCTGAACTTCAGAAGGAGGGAGACAATCTCAAAGCCATTCAAGACTTCTGGAGTTCTAATAATACTGCGGCAGCTGAGAATAACAACTTGCATTCTTCACAAGCCGGTCACATTGATCCCCCACCCGAACCCATCTTGCAAATCGGGTACCACACACTTGTGGCTGCTGAATCCGCAGATGTTCCAAAGACCATGGCCATGGCTGCCGACACCAACTTCATCCAGGGATGGGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

98

Amino Acids

10.47

Weight (kDa)

5.09

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 2 cut(s) 122, 228
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 276
AleI CACNNNNGTG 1 cut(s) 212
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 164
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 3 cut(s) 125, 218, 257
Asp718I GGTACC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 44
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 137, 205, 244
BccI CCATC 2 cut(s) 194, 276
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 69
BisI GCNGC 4 cut(s) 123, 126, 219, 258
BlsI GCNGC 4 cut(s) 124, 127, 220, 259
Bme1390I CCNGG 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 66, 98
BpmI CTGGAG 1 cut(s) 124
BsaJI CCNNGG 3 cut(s) 246, 252, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 2 cut(s) 4, 158
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 246, 252, 277
BseGI GGATG 2 cut(s) 273, 287
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 120
BseXI GCAGC 3 cut(s) 137, 205, 244
BshFI GGCC 1 cut(s) 251
BshNI GGYRCC 1 cut(s) 201
BsiSI CCGG 2 cut(s) 5, 159
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 251
Bsp143I GATC 2 cut(s) 49, 169
Bsp19I CCATGG 2 cut(s) 246, 252
BspACI CCGC 2 cut(s) 122, 228
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 201
BsrFI RCCGGY 2 cut(s) 4, 158
BssAI RCCGGY 2 cut(s) 4, 158
BssECI CCNNGG 3 cut(s) 246, 252, 277
BssMI GATC 2 cut(s) 49, 169
BssT1I CCWWGG 2 cut(s) 246, 252
Bst2UI CCWGG 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 2 cut(s) 246, 252
BstF5I GGATG 2 cut(s) 273, 287
BstKTI GATC 2 cut(s) 52, 172
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 2 cut(s) 49, 169
BstMWI GCNNNNNNNGC 2 cut(s) 227, 257
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstV1I GCAGC 3 cut(s) 137, 205, 244
BstV2I GAAGAC 1 cut(s) 23
BstXI CCANNNNNNTGG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 251
BtgI CCRYGG 2 cut(s) 246, 252
BtsCI GGATG 2 cut(s) 273, 287
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 2 cut(s) 4, 158
Csp6I GTAC 1 cut(s) 202
CviAII CATG 2 cut(s) 247, 253
CviJI RGCY 7 cut(s) 42, 89, 128, 158, 218, 251, 257
CviKI_1 RGCY 7 cut(s) 42, 89, 128, 158, 218, 251, 257
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 51, 171
DpnII GATC 2 cut(s) 49, 169
EaeI YGGCCR 1 cut(s) 249
Eco130I CCWWGG 2 cut(s) 246, 252
Eco57I CTGAAG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 2 cut(s) 246, 252
ErhI CCWWGG 2 cut(s) 246, 252
FaeI CATG 2 cut(s) 250, 256
FaiI YATR 3 cut(s) 26, 248, 254
FatI CATG 2 cut(s) 246, 252
Fnu4HI GCNGC 4 cut(s) 123, 126, 219, 258
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 4 cut(s) 123, 126, 219, 258
GluI GCNGC 4 cut(s) 123, 126, 219, 258
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 1 cut(s) 251
HapII CCGG 2 cut(s) 5, 159
Hin1II CATG 2 cut(s) 250, 256
HinfI GANTC 1 cut(s) 224
HpaII CCGG 2 cut(s) 5, 159
HphI GGTGA 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 2 cut(s) 95, 103
HpyAV CCTTC 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 145, 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 257
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 2 cut(s) 250, 256
KpnI GGTACC 1 cut(s) 205
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 49, 169
LpnPI CCDG 6 cut(s) 18, 69, 88, 172, 263, 290
Lsp1109I GCAGC 3 cut(s) 137, 205, 244
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 51, 171
MboI GATC 2 cut(s) 49, 169
MboII GAAGA 3 cut(s) 25, 28, 141
MlsI TGGCCA 1 cut(s) 251
MluNI TGGCCA 1 cut(s) 251
MnlI CCTC 1 cut(s) 64
Mox20I TGGCCA 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 4
MscI TGGCCA 1 cut(s) 251
MslI CAYNNNNRTG 2 cut(s) 212, 251
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 2 cut(s) 5, 159
MspR9I CCNGG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 227, 257
NaeI GCCGGC 1 cut(s) 6
NcoI CCATGG 2 cut(s) 246, 252
NdeII GATC 2 cut(s) 49, 169
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 250, 256
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 161
OliI CACNNNNGTG 1 cut(s) 212
PctI GAATGC 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 4 cut(s) 124, 127, 220, 259
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 2 cut(s) 212, 251
SatI GCNGC 4 cut(s) 123, 126, 219, 258
Sau3AI GATC 2 cut(s) 49, 169
ScrFI CCNGG 1 cut(s) 278
SetI ASST 1 cut(s) 130
SmiMI CAYNNNNRTG 2 cut(s) 212, 251
SsiI CCGC 2 cut(s) 122, 228
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 2 cut(s) 246, 252
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 224
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 3 cut(s) 125, 218, 257
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.