Rorug01G0220500
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009106
Physical Location & Seq
Forward (+)
31589817 .. 31590625
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0220500.1

Sequence Viewer

Length: 597 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCCGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGATTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAACTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGTAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGTGCATATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

198

Amino Acids

21.73

Weight (kDa)

5.36

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 2.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 581
AciI CCGC 1 cut(s) 531
AclWI GGATC 4 cut(s) 141, 330, 343, 553
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 2 cut(s) 91, 328
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 2 cut(s) 92, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 2 cut(s) 565, 587
AluI AGCT 2 cut(s) 565, 587
Alw21I GWGCWC 3 cut(s) 177, 453, 567
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 4 cut(s) 141, 330, 343, 553
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 581
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 2 cut(s) 50, 293
Asp700I GAANNNNTTC 2 cut(s) 316, 432
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 3 cut(s) 164, 306, 453
BamHI GGATCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 262, 567
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 3 cut(s) 177, 453, 567
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 1 cut(s) 586
BceAI ACGGC 2 cut(s) 72, 469
BciT130I CCWGG 2 cut(s) 94, 419
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlpI GCTNAGC 1 cut(s) 566
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 2 cut(s) 94, 419
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 4 cut(s) 6, 245, 337, 358
BmrFI CCNGG 2 cut(s) 94, 419
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 3 cut(s) 93, 399, 534
Bpu10I CCTNAGC 1 cut(s) 526
Bpu1102I GCTNAGC 1 cut(s) 566
BpuEI CTTGAG 3 cut(s) 113, 282, 581
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 3 cut(s) 306, 489, 541
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 5 cut(s) 205, 334, 367, 376, 551
BseAI TCCGGA 1 cut(s) 581
BseBI CCWGG 2 cut(s) 94, 419
BseDI CCNNGG 3 cut(s) 306, 489, 541
BseGI GGATG 2 cut(s) 389, 578
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 540, 580
BseNI ACTGG 5 cut(s) 205, 334, 367, 376, 551
BseRI GAGGAG 3 cut(s) 44, 420, 423
BseSI GKGCMC 3 cut(s) 164, 306, 453
BseXI GCAGC 2 cut(s) 62, 280
BsiHKAI GWGCWC 3 cut(s) 177, 453, 567
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 582
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
Bsp13I TCCGGA 1 cut(s) 581
Bsp143I GATC 7 cut(s) 112, 133, 186, 335, 343, 412, 545
Bsp1720I GCTNAGC 1 cut(s) 566
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 531
BspCNI CTCAG 2 cut(s) 539, 579
BspEI TCCGGA 1 cut(s) 581
BspLI GGNNCC 4 cut(s) 6, 245, 337, 358
BspPI GGATC 4 cut(s) 141, 330, 343, 553
BsrI ACTGG 5 cut(s) 205, 334, 367, 376, 551
BssECI CCNNGG 3 cut(s) 306, 489, 541
BssMI GATC 7 cut(s) 112, 133, 186, 335, 343, 412, 545
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 419
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 2 cut(s) 272, 438
BstACI GRCGYC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 526, 566
BstDSI CCRYGG 2 cut(s) 306, 541
BstEII GGTNACC 1 cut(s) 470
BstF5I GGATG 2 cut(s) 389, 578
BstKTI GATC 7 cut(s) 115, 136, 189, 338, 346, 415, 548
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 112, 133, 186, 335, 343, 412, 545
BstNI CCWGG 2 cut(s) 94, 419
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 92, 417
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 453
BstV1I GCAGC 2 cut(s) 62, 280
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 4 cut(s) 133, 186, 335, 545
BstYI RGATCY 4 cut(s) 133, 186, 335, 545
BtgI CCRYGG 2 cut(s) 306, 541
BtsCI GGATG 2 cut(s) 389, 578
BtsIMutI CAGTG 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 357
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 90, 327
CviAII CATG 3 cut(s) 70, 215, 307
CviJI RGCY 8 cut(s) 53, 87, 260, 293, 525, 565, 570, 587
CviKI_1 RGCY 8 cut(s) 53, 87, 260, 293, 525, 565, 570, 587
CviQI GTAC 2 cut(s) 90, 327
DdeI CTNAG 2 cut(s) 526, 566
DpnI GATC 7 cut(s) 114, 135, 188, 337, 345, 414, 547
DpnII GATC 7 cut(s) 112, 133, 186, 335, 343, 412, 545
Eam1104I CTCTTC 2 cut(s) 272, 438
EarI CTCTTC 2 cut(s) 272, 438
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 567
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 565
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 470
EcoICRI GAGCTC 1 cut(s) 565
EcoO65I GGTNACC 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 92, 417
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 567
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 6 cut(s) 71, 210, 216, 308, 505, 507
FatI CATG 3 cut(s) 69, 214, 306
FauNDI CATATG 1 cut(s) 505
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 2 cut(s) 376, 565
FriOI GRGCYC 2 cut(s) 262, 567
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 1 cut(s) 315
GluI GCNGC 2 cut(s) 51, 294
GsuI CTGGAG 3 cut(s) 93, 399, 534
HapII CCGG 2 cut(s) 54, 582
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 3 cut(s) 73, 218, 310
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 2 cut(s) 54, 582
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 360, 451
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 560, 582
Hpy8I GTNNAC 2 cut(s) 360, 451
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 2 cut(s) 252, 462
HpyCH4V TGCA 3 cut(s) 397, 451, 503
HpyF3I CTNAG 2 cut(s) 526, 566
HpySE526I ACGT 2 cut(s) 252, 462
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 3 cut(s) 73, 218, 310
Kpn2I TCCGGA 1 cut(s) 581
Kzo9I GATC 7 cut(s) 112, 133, 186, 335, 343, 412, 545
LmnI GCTCC 1 cut(s) 584
Lsp1109I GCAGC 2 cut(s) 62, 280
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 1 cut(s) 315
MaeII ACGT 2 cut(s) 252, 462
MaeIII GTNAC 2 cut(s) 470, 533
MalI GATC 7 cut(s) 114, 135, 188, 337, 345, 414, 547
MboI GATC 7 cut(s) 112, 133, 186, 335, 343, 412, 545
MboII GAAGA 3 cut(s) 289, 425, 490
MflI RGATCY 4 cut(s) 133, 186, 335, 545
MhlI GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
MluCI AATT 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 220
MroI TCCGGA 1 cut(s) 581
MroXI GAANNNNTTC 2 cut(s) 316, 432
MseI TTAA 1 cut(s) 156
MspI CCGG 2 cut(s) 54, 582
MspR9I CCNGG 2 cut(s) 94, 419
MvaI CCWGG 2 cut(s) 94, 419
NcoI CCATGG 1 cut(s) 306
NdeI CATATG 1 cut(s) 505
NdeII GATC 7 cut(s) 112, 133, 186, 335, 343, 412, 545
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 4 cut(s) 6, 245, 337, 358
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PdmI GAANNNNTTC 2 cut(s) 316, 432
PfeI GAWTC 2 cut(s) 100, 123
PkrI GCNGC 2 cut(s) 52, 295
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 567
Psp6I CCWGG 2 cut(s) 92, 417
PspEI GGTNACC 1 cut(s) 470
PspGI CCWGG 2 cut(s) 92, 417
PspN4I GGNNCC 4 cut(s) 6, 245, 337, 358
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 4 cut(s) 133, 186, 335, 545
RsaI GTAC 2 cut(s) 91, 328
RsaNI GTAC 2 cut(s) 90, 327
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 51, 294
Sau3AI GATC 7 cut(s) 112, 133, 186, 335, 343, 412, 545
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 2 cut(s) 94, 419
SduI GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
SetI ASST 8 cut(s) 98, 255, 284, 426, 465, 499, 567, 589
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 128, 261, 297, 560
SmoI CTYRAG 4 cut(s) 128, 261, 297, 560
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 1 cut(s) 349
SsiI CCGC 1 cut(s) 531
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 2 cut(s) 92, 417
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 2 cut(s) 255, 465
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 349
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 367
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 1 cut(s) 367
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 432
XspI CTAG 1 cut(s) 315
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.