Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009106

Physical Location & Seq

Genomic Coordinates Reverse (-)

23999625 .. 24005001

Gene Structure 5377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGGAGGGGAAGAGTGGAGCTCAAGAGAATAGAGAACAAGATCAACCGCCAGGTGACTTTTTCAAAGAGGAGAAATGGTTTGCTCAAAAAAGCATATGAGCTCTCTGTGCTTTGTGATGCTGAGGTTGCCCTTATCATCTTCTCTAGTCGAGGCAAGCTCTATGAGTTTTCAAGTGCTGGTAATAGTGCTTCTTCAGATTTTCTTTCTTTTCTCTCTGGAAAGTTCATTGCTTTGGGATTTTTGGGTTTCACTTCTTCTTCTTCTTCTTCTTCTATGAGATTAAGTGCGTGCTGGTATGAAGAAGTCTCAAAACTGAGAGCTAAATATGACTCACTTCTGCGTACTCAAAGGCATTTGCTTGGGGAAGACCTTGGACCACTGAGTGTGAAGGAGTTGCAAAATCTTGAAAAACAGCTTGAAGGAGCTCTTACACAAGCCAGACAAAGGAAGGAGCGACAGCTTGGAGACCTTAACCTGCAGCTTAGGGATAAGCTTCAGAAGGAGGGTGAAAATCTCAAAGCCATTCAAGACTTCTGGAGCTCTAATAGTGCAGCAGCTGGGAATAGCAACTTCTTGCATTCTTCACAAGCCAGCCACATTGATCCCGCACCTGAACCCATCTTACAAATTGGGTACCATCACTATGTTGCTGCTGAATCCTCAGATGTTCCGAAGAGCATGTCCATGGCTGCCGAGACCAACTTCATCCAGGGATGGGTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

242

Amino Acids

26.98

Weight (kDa)

9.16

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.8e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	97 - 168	1.6e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45650 AT3G61120
fragaria_vesca	FvH4_7g12670 FvH4_7g12670 FvH4_7g12680
malus_domestica	MD02G1197600.v1.1
prunus_persica	Prupe.2G151000_v2.0.a1
pyrus_communis	pycom02g16120
rosa_chinensis	RchiOBHm_Chr1g0351671
rosa_laevigata	RLG00000028391
rosa_multiflora	Rmu_sc0001144.1_g000005
rosa_roxburghii	Rroxscaffold_4G00303630
rosa_rugosa	Rorug01G0220100 Rorug01G0220200 Rorug01G0220300 Rorug01G0220400 Rorug01G0220500
rosa_samantha	Rh1AG234500 Rh1BG205100 Rh1CG219200 Rh1DG232100
rosa_wichuraiana	Rw1G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	486
Acc65I	GGTACC	1 cut(s)	636
AccB1I	GGYRCC	1 cut(s)	636
AciI	CCGC	2 cut(s)	49, 609
AclWI	GGATC	1 cut(s)	599
AcuI	CTGAAG	2 cut(s)	180, 482
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	346, 638
AfiI	CCNNNNNNNGG	2 cut(s)	447, 718
AgsI	TTSAA	5 cut(s)	66, 174, 410, 422, 530
AjnI	CCWGG	2 cut(s)	51, 711
Alw21I	GWGCWC	4 cut(s)	24, 105, 430, 545
Alw26I	GTCTC	3 cut(s)	313, 462, 692
AlwI	GGATC	1 cut(s)	599
AlwNI	CAGNNNCTG	1 cut(s)	560
ApeKI	GCWGC	5 cut(s)	481, 554, 557, 653, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	668, 700
Asp718I	GGTACC	1 cut(s)	636
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	2 cut(s)	67, 521
AvaII	GGWCC	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	636
BanII	GRGCYC	4 cut(s)	24, 105, 430, 545
BarI	GAAGNNNNNNTAC	2 cut(s)	175, 207
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	4 cut(s)	24, 105, 430, 545
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	493, 566, 569, 640, 679
BccI	CCATC	3 cut(s)	629, 648, 711
BciT130I	CCWGG	2 cut(s)	53, 713
BcoDI	GTCTC	3 cut(s)	313, 462, 692
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	486
BisI	GCNGC	5 cut(s)	482, 555, 558, 654, 693
BlsI	GCNGC	5 cut(s)	483, 556, 559, 655, 694
Bme1390I	CCNGG	2 cut(s)	53, 713
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	638
BmrFI	CCNGG	2 cut(s)	53, 713
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	375
BplI	GAGNNNNNCTC	3 cut(s)	38, 144, 176
BpmI	CTGGAG	1 cut(s)	559
Bpu10I	CCTNAGC	2 cut(s)	123, 485
BpuEI	CTTGAG	1 cut(s)	8
BsaI	GGTCTC	2 cut(s)	462, 692
BsaJI	CCNNGG	3 cut(s)	373, 687, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 718
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	53, 713
BseDI	CCNNGG	3 cut(s)	373, 687, 712
BseGI	GGATG	2 cut(s)	708, 722
BseLI	CCNNNNNNNGG	2 cut(s)	447, 718
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	4 cut(s)	114, 308, 374, 678
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	5 cut(s)	493, 566, 569, 640, 679
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	573
BshNI	GGYRCC	1 cut(s)	636
BsiHKAI	GWGCWC	4 cut(s)	24, 105, 430, 545
BslI	CCNNNNNNNGG	2 cut(s)	447, 718
BsmAI	GTCTC	3 cut(s)	313, 462, 692
BsmI	GAATGC	1 cut(s)	580
Bso31I	GGTCTC	2 cut(s)	462, 692
Bsp1286I	GDGCHC	4 cut(s)	24, 105, 430, 545
Bsp143I	GATC	2 cut(s)	42, 604
Bsp19I	CCATGG	1 cut(s)	687
BspACI	CCGC	2 cut(s)	49, 609
BspCNI	CTCAG	4 cut(s)	115, 309, 375, 677
BspLI	GGNNCC	1 cut(s)	638
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	599
BspQI	GCTCTTC	1 cut(s)	671
BspT107I	GGYRCC	1 cut(s)	636
BspTNI	GGTCTC	2 cut(s)	462, 692
BsrDI	GCAATG	1 cut(s)	228
BssECI	CCNNGG	3 cut(s)	373, 687, 712
BssMI	GATC	2 cut(s)	42, 604
BssT1I	CCWWGG	2 cut(s)	373, 687
Bst2UI	CCWGG	2 cut(s)	53, 713
Bst6I	CTCTTC	2 cut(s)	7, 671
BstC8I	GCNNGC	3 cut(s)	158, 292, 595
BstDEI	CTNAG	5 cut(s)	123, 317, 383, 485, 664
BstDSI	CCRYGG	1 cut(s)	687
BstF5I	GGATG	2 cut(s)	708, 722
BstKTI	GATC	2 cut(s)	45, 607
BstMAI	GTCTC	3 cut(s)	313, 462, 692
BstMBI	GATC	2 cut(s)	42, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 128
BstNI	CCWGG	2 cut(s)	53, 713
BstNSI	RCATGY	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	51, 711
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	5 cut(s)	493, 566, 569, 640, 679
BstV2I	GAAGAC	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	687
BtsCI	GGATG	2 cut(s)	708, 722
BtsIMutI	CAGTG	1 cut(s)	380
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	3 cut(s)	158, 292, 595
CaiI	CAGNNNCTG	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	345, 637
CviAII	CATG	2 cut(s)	682, 688
CviQI	GTAC	2 cut(s)	345, 637
DdeI	CTNAG	5 cut(s)	123, 317, 383, 485, 664
DpnI	GATC	2 cut(s)	44, 606
DpnII	GATC	2 cut(s)	42, 604
DraIII	CACNNNGTG	1 cut(s)	386
Eam1104I	CTCTTC	2 cut(s)	7, 671
EarI	CTCTTC	2 cut(s)	7, 671
Ecl136II	GAGCTC	4 cut(s)	22, 103, 428, 543
Eco130I	CCWWGG	2 cut(s)	373, 687
Eco24I	GRGCYC	4 cut(s)	24, 105, 430, 545
Eco31I	GGTCTC	2 cut(s)	462, 692
Eco47I	GGWCC	1 cut(s)	377
Eco53kI	GAGCTC	4 cut(s)	22, 103, 428, 543
Eco57I	CTGAAG	2 cut(s)	180, 482
EcoICRI	GAGCTC	4 cut(s)	22, 103, 428, 543
EcoRII	CCWGG	2 cut(s)	51, 711
EcoT14I	CCWWGG	2 cut(s)	373, 687
EcoT38I	GRGCYC	4 cut(s)	24, 105, 430, 545
ErhI	CCWWGG	2 cut(s)	373, 687
FaeI	CATG	2 cut(s)	685, 691
FaiI	YATR	9 cut(s)	97, 99, 165, 278, 300, 330, 648, 683, 689
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	2 cut(s)	681, 687
FauI	CCCGC	1 cut(s)	616
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	5 cut(s)	482, 555, 558, 654, 693
FokI	GGATG	1 cut(s)	695
FriOI	GRGCYC	4 cut(s)	24, 105, 430, 545
Fsp4HI	GCNGC	5 cut(s)	482, 555, 558, 654, 693
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	5 cut(s)	482, 555, 558, 654, 693
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	559
Hin1II	CATG	2 cut(s)	685, 691
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	2 cut(s)	332, 659
HphI	GGTGA	2 cut(s)	67, 521
Hpy188I	TCNGA	4 cut(s)	199, 501, 667, 675
Hpy188III	TCNNGA	5 cut(s)	25, 219, 407, 530, 538
HpyAV	CCTTC	4 cut(s)	385, 416, 445, 496
HpyCH4V	TGCA	4 cut(s)	400, 481, 554, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 128
HpyF3I	CTNAG	5 cut(s)	123, 317, 383, 485, 664
Hsp92II	CATG	2 cut(s)	685, 691
KpnI	GGTACC	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	42, 604
LguI	GCTCTTC	1 cut(s)	671
LmnI	GCTCC	4 cut(s)	19, 425, 454, 540
Lsp1109I	GCAGC	5 cut(s)	493, 566, 569, 640, 679
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	44, 606
MboI	GATC	2 cut(s)	42, 604
MhlI	GDGCHC	4 cut(s)	24, 105, 430, 545
MluCI	AATT	1 cut(s)	630
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	5 cut(s)	63, 118, 146, 499, 673
MseI	TTAA	2 cut(s)	284, 474
MslI	CAYNNNNRTG	2 cut(s)	645, 686
MspA1I	CMGCKG	1 cut(s)	560
MspR9I	CCNGG	2 cut(s)	53, 713
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	2 cut(s)	53, 713
MwoI	GCNNNNNNNGC	2 cut(s)	109, 128
NcoI	CCATGG	1 cut(s)	687
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	2 cut(s)	42, 604
NlaIII	CATG	2 cut(s)	685, 691
NlaIV	GGNNCC	1 cut(s)	638
NmeAIII	GCCGAG	1 cut(s)	721
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	671
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	659
PkrI	GCNGC	5 cut(s)	483, 556, 559, 655, 694
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp124BI	GAGCTC	4 cut(s)	24, 105, 430, 545
Psp6I	CCWGG	2 cut(s)	51, 711
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	51, 711
PspN4I	GGNNCC	1 cut(s)	638
PspPI	GGNCC	1 cut(s)	377
PsrI	GAACNNNNNNTAC	2 cut(s)	609, 641
PstI	CTGCAG	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	2 cut(s)	346, 638
RsaNI	GTAC	2 cut(s)	345, 637
RseI	CAYNNNNRTG	2 cut(s)	645, 686
SacI	GAGCTC	4 cut(s)	24, 105, 430, 545
SapI	GCTCTTC	1 cut(s)	671
SaqAI	TTAA	2 cut(s)	284, 474
SatI	GCNGC	5 cut(s)	482, 555, 558, 654, 693
Sau3AI	GATC	2 cut(s)	42, 604
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	53, 713
SduI	GDGCHC	4 cut(s)	24, 105, 430, 545
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	645, 686
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	630
SsiI	CCGC	2 cut(s)	49, 609
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	4 cut(s)	24, 105, 430, 545
StyD4I	CCNGG	2 cut(s)	51, 711
StyI	CCWWGG	2 cut(s)	373, 687
TaqI	TCGA	1 cut(s)	151
TasI	AATT	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	2 cut(s)	284, 474
Tru9I	TTAA	2 cut(s)	284, 474
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	481, 554, 557, 653, 692
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	217, 315, 697
TspRI	CASTG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	377
XceI	RCATGY	1 cut(s)	685
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.