FvH4_7g12670
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009106
Physical Location & Seq
Forward (+)
11481467 .. 11486182
4716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12670.t2

Sequence Viewer

Length: 738 bp
ATGGGGAGGGGAAGAGTGGAGCTCAAGAGAATAGAGAACAAGATCAACCGCCAAGTAACTTTTTCAAAGAGGAGAAATGGTTTGCTCAAAAAAGCCTATGAGCTCTCTGTGCTTTGTGATGCTGAGGTTGCGCTTATCATCTTCTCTAGTCGAGGCAAGCTGTATGAGTTTTCAAGTGCTGGTATGACCCAAACCCTTGAGCGATACCAACGAAGCAGCTATACTCCTCATGACAACCCCATCAAACAGGAAACAGAGTGCTGGTATGAAGAAGTCTCAAAACTGAGAGCTAAACATGACTCACTTCTGCGCACTCAAAGGCATTTGCTTGGGGAAGACCTTGGACCACTGAGTGTGAAGGAGTTGCAAAATCTTGAAAAACAGCTTGAAGGAGCTCTTACACTAGCCAGACAAAGGAAGACACAGATTATGATTGAACAATTGGAGCACCTGCGCAAAAAGGAGCGACAGCTTGGAGACCTTAACCTGCAGCTTAGGGATAAGCTTCAGAAGGAGGGAGAAAATCTCAAAGCCATTCAAGACTTCTGGAGCTCTAATACTGTACAAGCTGGGAATAACAACTTCTTGCATTCTTCTCAAGCCGGTCACATTGATCCCCCACCCGAACCCATCTTGCAAATCGGGTACCAGCACTATGTGGCTGCTGAATCCGCATATGTTCCAAAGACCATGGCCATGGCTGCCGAGACCAACTTCATCCAGGGATGGGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

246

Amino Acids

28.19

Weight (kDa)

9.1

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 50 - 137 1.8e-26 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 459
Acc16I TGCGCA 2 cut(s) 311, 455
Acc36I ACCTGC 2 cut(s) 459, 495
Acc65I GGTACC 1 cut(s) 645
AccB1I GGYRCC 1 cut(s) 645
AciI CCGC 2 cut(s) 49, 672
AclWI GGATC 1 cut(s) 608
AcoI YGGCCR 1 cut(s) 693
AcuI CTGAAG 1 cut(s) 491
AdeI CACNNNGTG 2 cut(s) 353, 658
AfaI GTAC 2 cut(s) 564, 647
AfiI CCNNNNNNNGG 2 cut(s) 414, 727
AgsI TTSAA 6 cut(s) 66, 174, 377, 389, 437, 539
AjnI CCWGG 1 cut(s) 720
Alw21I GWGCWC 5 cut(s) 24, 105, 397, 450, 554
Alw26I GTCTC 3 cut(s) 280, 471, 701
AlwI GGATC 1 cut(s) 608
AoxI GGCC 1 cut(s) 693
ApeKI GCWGC 4 cut(s) 216, 490, 662, 701
Asp718I GGTACC 1 cut(s) 645
AspLEI GCGC 3 cut(s) 133, 312, 456
AspS9I GGNCC 1 cut(s) 344
AvaII GGWCC 1 cut(s) 344
BalI TGGCCA 1 cut(s) 695
BanI GGYRCC 1 cut(s) 645
BanII GRGCYC 4 cut(s) 24, 105, 397, 554
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BbsI GAAGAC 2 cut(s) 342, 425
Bbv12I GWGCWC 5 cut(s) 24, 105, 397, 450, 554
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 4 cut(s) 228, 502, 649, 688
BccI CCATC 3 cut(s) 248, 638, 720
BciT130I CCWGG 1 cut(s) 722
BcoDI GTCTC 3 cut(s) 280, 471, 701
BfaI CTAG 2 cut(s) 147, 404
BfmI CTRYAG 1 cut(s) 488
BfuAI ACCTGC 2 cut(s) 459, 495
BisI GCNGC 4 cut(s) 217, 491, 663, 702
BlsI GCNGC 4 cut(s) 218, 492, 664, 703
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 647
BmrFI CCNGG 1 cut(s) 722
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 2 cut(s) 342, 425
BplI GAGNNNNNCTC 3 cut(s) 38, 510, 542
BpmI CTGGAG 1 cut(s) 568
Bpu10I CCTNAGC 2 cut(s) 123, 494
BpuEI CTTGAG 3 cut(s) 8, 218, 582
BsaI GGTCTC 2 cut(s) 471, 701
BsaJI CCNNGG 4 cut(s) 340, 690, 696, 721
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 727
Bse118I RCCGGY 1 cut(s) 602
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 4 cut(s) 340, 690, 696, 721
BseGI GGATG 2 cut(s) 717, 731
BseLI CCNNNNNNNGG 2 cut(s) 414, 727
BseMII CTCAG 3 cut(s) 114, 275, 341
BseRI GAGGAG 2 cut(s) 85, 216
BseXI GCAGC 4 cut(s) 228, 502, 649, 688
BseYI CCCAGC 1 cut(s) 569
BshFI GGCC 1 cut(s) 695
BshNI GGYRCC 1 cut(s) 645
BsiHKAI GWGCWC 5 cut(s) 24, 105, 397, 450, 554
BsiSI CCGG 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 414, 727
BsmAI GTCTC 3 cut(s) 280, 471, 701
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 1 cut(s) 695
Bso31I GGTCTC 2 cut(s) 471, 701
Bsp1286I GDGCHC 5 cut(s) 24, 105, 397, 450, 554
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 2 cut(s) 42, 613
Bsp19I CCATGG 2 cut(s) 690, 696
BspACI CCGC 2 cut(s) 49, 672
BspANI GGCC 1 cut(s) 695
BspCNI CTCAG 3 cut(s) 115, 276, 342
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 647
BspMAI CTGCAG 1 cut(s) 492
BspMI ACCTGC 2 cut(s) 459, 495
BspPI GGATC 1 cut(s) 608
BspT107I GGYRCC 1 cut(s) 645
BspTNI GGTCTC 2 cut(s) 471, 701
BsrFI RCCGGY 1 cut(s) 602
BsrGI TGTACA 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 4 cut(s) 340, 690, 696, 721
BssMI GATC 2 cut(s) 42, 613
BssT1I CCWWGG 3 cut(s) 340, 690, 696
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 1 cut(s) 7
BstAUI TGTACA 1 cut(s) 562
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 4 cut(s) 123, 284, 350, 494
BstDSI CCRYGG 2 cut(s) 690, 696
BstF5I GGATG 2 cut(s) 717, 731
BstHHI GCGC 3 cut(s) 133, 312, 456
BstKTI GATC 2 cut(s) 45, 616
BstMAI GTCTC 3 cut(s) 280, 471, 701
BstMBI GATC 2 cut(s) 42, 613
BstMWI GCNNNNNNNGC 4 cut(s) 109, 128, 671, 701
BstNI CCWGG 1 cut(s) 722
BstSCI CCNGG 1 cut(s) 720
BstSFI CTRYAG 1 cut(s) 488
BstV1I GCAGC 4 cut(s) 228, 502, 649, 688
BstV2I GAAGAC 2 cut(s) 342, 425
BstXI CCANNNNNNTGG 1 cut(s) 697
BsuRI GGCC 1 cut(s) 695
BtgI CCRYGG 2 cut(s) 690, 696
BtsCI GGATG 2 cut(s) 717, 731
BtsIMutI CAGTG 1 cut(s) 347
BveI ACCTGC 2 cut(s) 459, 495
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 1 cut(s) 229
CfoI GCGC 3 cut(s) 133, 312, 456
Cfr10I RCCGGY 1 cut(s) 602
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 2 cut(s) 563, 646
CviAII CATG 4 cut(s) 230, 296, 691, 697
CviQI GTAC 2 cut(s) 563, 646
DdeI CTNAG 4 cut(s) 123, 284, 350, 494
DpnI GATC 2 cut(s) 44, 615
DpnII GATC 2 cut(s) 42, 613
DraIII CACNNNGTG 2 cut(s) 353, 658
EaeI YGGCCR 1 cut(s) 693
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
Ecl136II GAGCTC 4 cut(s) 22, 103, 395, 552
Eco130I CCWWGG 3 cut(s) 340, 690, 696
Eco24I GRGCYC 4 cut(s) 24, 105, 397, 554
Eco31I GGTCTC 2 cut(s) 471, 701
Eco47I GGWCC 1 cut(s) 344
Eco53kI GAGCTC 4 cut(s) 22, 103, 395, 552
Eco57I CTGAAG 1 cut(s) 491
EcoICRI GAGCTC 4 cut(s) 22, 103, 395, 552
EcoRII CCWGG 1 cut(s) 720
EcoT14I CCWWGG 3 cut(s) 340, 690, 696
EcoT38I GRGCYC 4 cut(s) 24, 105, 397, 554
ErhI CCWWGG 3 cut(s) 340, 690, 696
FaeI CATG 4 cut(s) 233, 299, 694, 700
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FatI CATG 4 cut(s) 229, 295, 690, 696
FauNDI CATATG 1 cut(s) 676
Fnu4HI GCNGC 4 cut(s) 217, 491, 663, 702
FokI GGATG 1 cut(s) 704
FriOI GRGCYC 4 cut(s) 24, 105, 397, 554
Fsp4HI GCNGC 4 cut(s) 217, 491, 663, 702
FspBI CTAG 2 cut(s) 147, 404
FspI TGCGCA 2 cut(s) 311, 455
GlaI GCGC 3 cut(s) 132, 311, 455
GluI GCNGC 4 cut(s) 217, 491, 663, 702
GsaI CCCAGC 1 cut(s) 573
GsuI CTGGAG 1 cut(s) 568
HaeIII GGCC 1 cut(s) 695
HapII CCGG 1 cut(s) 603
HhaI GCGC 3 cut(s) 133, 312, 456
Hin1II CATG 4 cut(s) 233, 299, 694, 700
Hin6I GCGC 3 cut(s) 131, 310, 454
HinP1I GCGC 3 cut(s) 131, 310, 454
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 2 cut(s) 299, 668
HpaII CCGG 1 cut(s) 603
Hpy188I TCNGA 1 cut(s) 510
Hpy188III TCNNGA 5 cut(s) 25, 230, 374, 539, 547
HpyAV CCTTC 3 cut(s) 352, 383, 505
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4V TGCA 4 cut(s) 367, 490, 589, 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 128, 671, 701
HpyF3I CTNAG 4 cut(s) 123, 284, 350, 494
Hsp92II CATG 4 cut(s) 233, 299, 694, 700
HspAI GCGC 3 cut(s) 131, 310, 454
KpnI GGTACC 1 cut(s) 649
Kzo9I GATC 2 cut(s) 42, 613
LmnI GCTCC 5 cut(s) 19, 392, 445, 463, 549
Lsp1109I GCAGC 4 cut(s) 228, 502, 649, 688
LweI GCATC 1 cut(s) 109
MaeI CTAG 2 cut(s) 147, 404
MaeIII GTNAC 2 cut(s) 55, 605
MalI GATC 2 cut(s) 44, 615
MboI GATC 2 cut(s) 42, 613
MboII GAAGA 6 cut(s) 24, 133, 281, 347, 430, 585
MfeI CAATTG 1 cut(s) 440
MhlI GDGCHC 5 cut(s) 24, 105, 397, 450, 554
MlsI TGGCCA 1 cut(s) 695
MluCI AATT 1 cut(s) 440
MluNI TGGCCA 1 cut(s) 695
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 5 cut(s) 63, 118, 146, 237, 508
Mox20I TGGCCA 1 cut(s) 695
MscI TGGCCA 1 cut(s) 695
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 1 cut(s) 695
Msp20I TGGCCA 1 cut(s) 695
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 1 cut(s) 722
MunI CAATTG 1 cut(s) 440
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 1 cut(s) 722
MwoI GCNNNNNNNGC 4 cut(s) 109, 128, 671, 701
NcoI CCATGG 2 cut(s) 690, 696
NdeI CATATG 1 cut(s) 676
NdeII GATC 2 cut(s) 42, 613
NlaIII CATG 4 cut(s) 233, 299, 694, 700
NlaIV GGNNCC 1 cut(s) 647
NmeAIII GCCGAG 1 cut(s) 730
NmuCI GTSAC 1 cut(s) 605
NsbI TGCGCA 2 cut(s) 311, 455
PagI TCATGA 1 cut(s) 229
PaqCI CACCTGC 1 cut(s) 459
PctI GAATGC 1 cut(s) 589
PfeI GAWTC 1 cut(s) 668
PkrI GCNGC 4 cut(s) 218, 492, 664, 703
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Psp124BI GAGCTC 4 cut(s) 24, 105, 397, 554
Psp6I CCWGG 1 cut(s) 720
PspFI CCCAGC 1 cut(s) 569
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 647
PspPI GGNCC 1 cut(s) 344
PstI CTGCAG 1 cut(s) 492
RsaI GTAC 2 cut(s) 564, 647
RsaNI GTAC 2 cut(s) 563, 646
RseI CAYNNNNRTG 1 cut(s) 695
SacI GAGCTC 4 cut(s) 24, 105, 397, 554
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 4 cut(s) 217, 491, 663, 702
Sau3AI GATC 2 cut(s) 42, 613
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 722
SduI GDGCHC 5 cut(s) 24, 105, 397, 450, 554
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 488
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 3 cut(s) 23, 197, 597
SmoI CTYRAG 3 cut(s) 23, 197, 597
Sse9I AATT 1 cut(s) 440
SsiI CCGC 2 cut(s) 49, 672
SspMI CTAG 2 cut(s) 147, 404
SstI GAGCTC 4 cut(s) 24, 105, 397, 554
StyD4I CCNGG 1 cut(s) 720
StyI CCWWGG 3 cut(s) 340, 690, 696
TaaI ACNGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 151
TasI AATT 1 cut(s) 440
TatI WGTACW 1 cut(s) 562
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 605
TseI GCWGC 4 cut(s) 216, 490, 662, 701
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 2 cut(s) 282, 706
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 344
XspI CTAG 2 cut(s) 147, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.