Rorug01G0220200
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009106
Physical Location & Seq
Reverse (-)
31467568 .. 31468243
676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0220200.1

Sequence Viewer

Length: 588 bp
ATGACCATAGTTTTTGTAAAAGAAAAAGTACTAGTGGAGGAGGGCCAAATCGAGCGCTTTATAGATGAGATTATCACTCTTGCCCAAATGAAACATCAAAATGTGATCAAATTGTTGGGCTGCTGTTTAGAGACAGAAGCTCCCATTTTGGTTTATGAATCCGCCTCTAACGGGACCCTTTTTGATAACATTCATGATCAAAAAAATGGAAAAGCTGCGATGCCTCGTTGGGATATCCTTACGAAGATAGCATCAGAATCTGCAGCAGTTGCTGGTTTTGGACCTCCACGGTTGGTCCCTAGTGATGAGTCCCAGATAGGTACATTGGTGCAGAGGACAGGAGGTTATATGGACCCAGAATATTTCGTTACAGGCCAATTGACAGATAAGAGTGATGTTTACAGCTTCGGAGTCGTTTTGGTAGAAATTTTAACTGGGGAGAAGCCAGTATCCTTTAATAGACCAGAAAATCAAAGAATCATAATTTGCCATTTCCTTTTGTCCATGGAGCAACAAAATGGCCTGTATCAGATTCTTGCGCCGCAAGTTAAGGAAGAAAACAAAGAACAAGTCGGAGTCGTAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

195

Amino Acids

21.7

Weight (kDa)

4.85

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 12 - 84 6.7e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 14 - 68 6.1e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 89 - 151 2.9e-08 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 91 - 164 3.6e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 162, 542
AcsI RAATTY 1 cut(s) 426
AfaI GTAC 2 cut(s) 30, 322
AfeI AGCGCT 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 171
AhlI ACTAGT 1 cut(s) 31
AluBI AGCT 3 cut(s) 140, 215, 405
AluI AGCT 3 cut(s) 140, 215, 405
Alw26I GTCTC 1 cut(s) 125
AlwNI CAGNNNCTG 2 cut(s) 260, 272
Aor51HI AGCGCT 1 cut(s) 56
AoxI GGCC 3 cut(s) 43, 373, 520
ApeKI GCWGC 3 cut(s) 120, 215, 263
ApoI RAATTY 1 cut(s) 426
ArsI GACNNNNNNTTYG 2 cut(s) 555, 587
AspLEI GCGC 2 cut(s) 57, 541
AspS9I GGNCC 5 cut(s) 43, 174, 281, 295, 352
AvaII GGWCC 4 cut(s) 174, 281, 295, 352
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BbvI GCAGC 3 cut(s) 107, 202, 275
BciVI GTATCC 1 cut(s) 460
BclI TGATCA 2 cut(s) 105, 196
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 2 cut(s) 32, 300
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 58
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 4 cut(s) 121, 216, 264, 542
BlsI GCNGC 4 cut(s) 122, 217, 265, 543
BmcAI AGTACT 1 cut(s) 30
Bme18I GGWCC 4 cut(s) 174, 281, 295, 352
BmgT120I GGNCC 5 cut(s) 43, 174, 281, 295, 352
BmiI GGNNCC 4 cut(s) 175, 176, 297, 354
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 2 cut(s) 210, 260
BmuI ACTGGG 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 287, 504
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 439, 446
BseDI CCNNGG 2 cut(s) 287, 504
BseLI CCNNNNNNNGG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 439, 446
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 3 cut(s) 107, 202, 275
BsgI GTGCAG 1 cut(s) 350
BshFI GGCC 3 cut(s) 45, 375, 522
BslFI GGGAC 3 cut(s) 187, 281, 295
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 3 cut(s) 187, 281, 295
BsnI GGCC 3 cut(s) 45, 375, 522
Bsp143I GATC 2 cut(s) 105, 196
Bsp19I CCATGG 1 cut(s) 504
BspACI CCGC 2 cut(s) 162, 542
BspANI GGCC 3 cut(s) 45, 375, 522
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 4 cut(s) 175, 176, 297, 354
BspMAI CTGCAG 1 cut(s) 265
BsrI ACTGG 2 cut(s) 439, 446
BssECI CCNNGG 2 cut(s) 287, 504
BssMI GATC 2 cut(s) 105, 196
BssT1I CCWWGG 1 cut(s) 504
Bst4CI ACNGT 1 cut(s) 291
BstAPI GCANNNNNTGC 1 cut(s) 269
BstDSI CCRYGG 2 cut(s) 287, 504
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 2 cut(s) 57, 541
BstKTI GATC 2 cut(s) 108, 199
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 105, 196
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 107, 202, 275
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 3 cut(s) 45, 375, 522
BtgI CCRYGG 2 cut(s) 287, 504
BtgZI GCGATG 1 cut(s) 233
CaiI CAGNNNCTG 2 cut(s) 260, 272
CciI TCATGA 1 cut(s) 193
CfoI GCGC 2 cut(s) 57, 541
Cfr13I GGNCC 5 cut(s) 43, 174, 281, 295, 352
Csp6I GTAC 2 cut(s) 29, 321
CviAII CATG 2 cut(s) 194, 505
CviJI RGCY 8 cut(s) 45, 120, 140, 215, 375, 405, 445, 522
CviKI_1 RGCY 8 cut(s) 45, 120, 140, 215, 375, 405, 445, 522
CviQI GTAC 2 cut(s) 29, 321
DpnI GATC 2 cut(s) 107, 198
DpnII GATC 2 cut(s) 105, 196
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 504
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 4 cut(s) 174, 281, 295, 352
Eco47III AGCGCT 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 174
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 2 cut(s) 197, 508
FaiI YATR 9 cut(s) 8, 62, 156, 195, 348, 350, 482, 506, 586
FaqI GGGAC 3 cut(s) 187, 281, 295
FatI CATG 2 cut(s) 193, 504
FbaI TGATCA 2 cut(s) 105, 196
Fnu4HI GCNGC 4 cut(s) 121, 216, 264, 542
Fsp4HI GCNGC 4 cut(s) 121, 216, 264, 542
FspBI CTAG 2 cut(s) 32, 300
GlaI GCGC 2 cut(s) 56, 540
GluI GCNGC 4 cut(s) 121, 216, 264, 542
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 3 cut(s) 45, 375, 522
HhaI GCGC 2 cut(s) 57, 541
Hin1II CATG 2 cut(s) 197, 508
Hin6I GCGC 2 cut(s) 55, 539
HinP1I GCGC 2 cut(s) 55, 539
HinfI GANTC 7 cut(s) 158, 257, 308, 411, 477, 532, 576
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 4 cut(s) 256, 410, 531, 575
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 400
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 263, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
Hsp92II CATG 2 cut(s) 197, 508
HspAI GCGC 2 cut(s) 55, 539
KflI GGGWCCC 1 cut(s) 174
Ksp22I TGATCA 2 cut(s) 105, 196
Kzo9I GATC 2 cut(s) 105, 196
LmnI GCTCC 2 cut(s) 145, 508
LpnPI CCDG 9 cut(s) 258, 324, 326, 357, 369, 420, 459, 477, 536
Lsp1109I GCAGC 3 cut(s) 107, 202, 275
LweI GCATC 2 cut(s) 210, 260
MaeI CTAG 2 cut(s) 32, 300
MaeIII GTNAC 1 cut(s) 367
MalI GATC 2 cut(s) 107, 198
MboI GATC 2 cut(s) 105, 196
MboII GAAGA 2 cut(s) 256, 566
MfeI CAATTG 1 cut(s) 377
MluCI AATT 4 cut(s) 110, 377, 426, 483
MlyI GAGTC 3 cut(s) 317, 420, 585
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 7 cut(s) 31, 34, 175, 234, 294, 327, 335
MseI TTAA 3 cut(s) 431, 456, 549
MslI CAYNNNNRTG 1 cut(s) 99
MunI CAATTG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 269
NcoI CCATGG 1 cut(s) 504
NdeII GATC 2 cut(s) 105, 196
NlaIII CATG 2 cut(s) 197, 508
NlaIV GGNNCC 4 cut(s) 175, 176, 297, 354
PagI TCATGA 1 cut(s) 193
PfeI GAWTC 4 cut(s) 158, 257, 477, 532
PkrI GCNGC 4 cut(s) 122, 217, 265, 543
PleI GAGTC 3 cut(s) 316, 419, 584
PpsI GAGTC 3 cut(s) 316, 419, 584
PpuMI RGGWCCY 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 174
PspN4I GGNNCC 4 cut(s) 175, 176, 297, 354
PspPI GGNCC 5 cut(s) 43, 174, 281, 295, 352
PspPPI RGGWCCY 1 cut(s) 174
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 2 cut(s) 260, 272
RsaI GTAC 2 cut(s) 30, 322
RsaNI GTAC 2 cut(s) 29, 321
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 3 cut(s) 431, 456, 549
SatI GCNGC 4 cut(s) 121, 216, 264, 542
Sau3AI GATC 2 cut(s) 105, 196
Sau96I GGNCC 5 cut(s) 43, 174, 281, 295, 352
ScaI AGTACT 1 cut(s) 30
SchI GAGTC 3 cut(s) 317, 420, 585
SetI ASST 6 cut(s) 142, 217, 286, 322, 346, 407
SfaNI GCATC 2 cut(s) 210, 260
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 4 cut(s) 174, 281, 295, 352
SmiMI CAYNNNNRTG 1 cut(s) 99
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 4 cut(s) 110, 377, 426, 483
SsiI CCGC 2 cut(s) 162, 542
SspI AATATT 1 cut(s) 362
SspMI CTAG 2 cut(s) 32, 300
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 51
TasI AATT 4 cut(s) 110, 377, 426, 483
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 544
TfiI GAWTC 4 cut(s) 158, 257, 477, 532
Tru1I TTAA 3 cut(s) 431, 456, 549
Tru9I TTAA 3 cut(s) 431, 456, 549
TseI GCWGC 3 cut(s) 120, 215, 263
TspDTI ATGAA 3 cut(s) 104, 171, 182
VpaK11BI GGWCC 4 cut(s) 174, 281, 295, 352
XapI RAATTY 1 cut(s) 426
XspI CTAG 2 cut(s) 32, 300
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.