Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006569

Physical Location & Seq

Genomic Coordinates Reverse (-)

22771405 .. 22773790

Gene Structure 2386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTGCTTCGCTCGTCAGGAGTTGTTGCTCTCGTGCTTCGAGAGCCATCACCACCGTCCGGTTTATGAGCAACGTACCGGAGGACACGGTTTACGGAGGACCGAAACCGCAGAACTCGAATCAGAGAGTGACTTTGACGCAATTGAGACAGAAGCATCGGAAAGGTGAGCCGATAACTATGGTCACCGCCTACGATTACCCTTCTGCCGTTCACATCGATACAGCTGGAATCGATGTTTGTCTCGTCGGAGATTCAGCTGCCATGGTTGTCCATGGCTATGACACCACTCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCGCGCCGTTGCTCGCGGAGCCAAAAGACCACTTCTTGTCGGCGATTTGCCGTTTGGTACTTATGAATCTAGCACCAATCAGGCGGTTGATACTGCAGTTAGGGTGTTGAAAGAAGGAGGAATGGATGCTATTAAACTTGAAGGAGGATCACCTTCAAGGATCACTGCTGCAAAATCCATTGTGGAAGCAGGGATTGCCGTTATGGGACATGTTGGGTTGACTCCTCAAGCTATCAGTGTTCTTGGTGGTTTCAGGCCACAGGGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGCTATGGCTTTGCAAGAAGCTGGATGTTTTTCGGTTGTTTTAGAATGTGTTCCACCTCCTGTGGCTGCTGCTGCAACCTCTGCTCTTAATATTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGGTCAGGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAGGTTACTCCAAAGTTTTGCAAACAGTACGCTCAAGTAGGAGAAGTGATCAACAAAGCCCTCTTGGAGTATAAGGAAGAAGTATCCAAACACTTGTTTCCAGGTCCTTCTCACAGCCCTTACAAGATCTCCTCAAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAAATTGGGATTAGATAAAGCTGCTTCTGATGCAGCAGCATCAGCTGAAAAGATGGATCATTCAGATTCACCATCTTCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003864 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0015939 GO:0015940 GO:0016053 GO:0016740 GO:0016741 GO:0016742 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0050897 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko01110 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_transf

Protein Analysis

354

Amino Acids

37.36

Weight (kDa)

6.86

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_transf	PF02548	43 - 306	3.3e-106	Ketopantoate hydroxymethyltransferase
PEP_mutase	PF13714	49 - 158	4.4e-06	Phosphoenolpyruvate phosphomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46110 AT3G61530 AT3G61530
fragaria_vesca	FvH4_7g15370
malus_domestica	MD07G1131200.v1.1
prunus_persica	Prupe.2G177600_v2.0.a1
pyrus_communis	pycom01g10060 pycom07g12820
rosa_chinensis	RchiOBHm_Chr1g0357691 RchiOBHm_Chr1g0357711
rosa_laevigata	RLG00000028006
rosa_multiflora	Rmu_co7965146.1_g000001 Rmu_co8050058.1_g000001 Rmu_sc0008574.1_g000001 Rmu_ssc0000399.1_g000025 Rmu_ssc0000425.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298580 Rroxscaffold_4G00298590
rosa_rugosa	Rorug01G0257700
rosa_samantha	Rh1AG271800 Rh1BG239000 Rh1CG255700 Rh1CG255800 Rh1DG267400
rosa_wichuraiana	Rw1G024240 Rw1G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	771
AccII	CGCG	2 cut(s)	330, 342
AciI	CCGC	4 cut(s)	110, 189, 342, 410
AclWI	GGATC	3 cut(s)	481, 494, 1044
AfaI	GTAC	3 cut(s)	78, 385, 842
AfiI	CCNNNNNNNGG	2 cut(s)	60, 728
AflII	CTTAAG	1 cut(s)	967
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	3 cut(s)	436, 467, 483
AjnI	CCWGG	2 cut(s)	913, 954
AluBI	AGCT	7 cut(s)	227, 260, 557, 647, 740, 1001, 1025
AluI	AGCT	7 cut(s)	227, 260, 557, 647, 740, 1001, 1025
Alw26I	GTCTC	2 cut(s)	142, 248
AlwI	GGATC	3 cut(s)	481, 494, 1044
AoxI	GGCC	2 cut(s)	581, 742
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	101, 743, 917
AsuHPI	GGTGA	5 cut(s)	43, 178, 179, 468, 1041
AvaII	GGWCC	2 cut(s)	101, 917
BaeI	ACNNNNGTAYC	2 cut(s)	408, 441
BauI	CACGAG	1 cut(s)	33
BbvI	GCAGC	9 cut(s)	247, 481, 679, 682, 685, 808, 988, 1025, 1028
BccI	CCATC	3 cut(s)	56, 1027, 1060
BceAI	ACGGC	4 cut(s)	194, 317, 361, 509
BciT130I	CCWGG	2 cut(s)	915, 956
BciVI	GTATCC	1 cut(s)	907
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	2 cut(s)	142, 248
BfaI	CTAG	2 cut(s)	396, 603
BfmI	CTRYAG	2 cut(s)	420, 751
BfrI	CTTAAG	1 cut(s)	967
BfuI	GTATCC	1 cut(s)	907
BglII	AGATCT	1 cut(s)	939
Bme1390I	CCNGG	2 cut(s)	915, 956
Bme18I	GGWCC	2 cut(s)	101, 917
BmgT120I	GGNCC	3 cut(s)	101, 743, 917
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	915, 956
BmsI	GCATC	7 cut(s)	166, 303, 442, 783, 808, 1000, 1028
Bpu10I	CCTNAGC	1 cut(s)	813
BpuEI	CTTGAG	3 cut(s)	537, 831, 931
Bsa29I	ATCGAT	2 cut(s)	219, 234
BsaJI	CCNNGG	2 cut(s)	264, 274
BsaWI	WCCGGW	2 cut(s)	60, 79
BsaXI	ACNNNNNCTCC	2 cut(s)	926, 956
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 728
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	915, 956
BseCI	ATCGAT	2 cut(s)	219, 234
BseDI	CCNNGG	2 cut(s)	264, 274
BseGI	GGATG	3 cut(s)	457, 656, 799
BseLI	CCNNNNNNNGG	2 cut(s)	60, 728
BseMI	GCAATG	1 cut(s)	597
BseRI	GAGGAG	3 cut(s)	323, 540, 934
BseXI	GCAGC	9 cut(s)	247, 481, 679, 682, 685, 808, 988, 1025, 1028
Bsh1236I	CGCG	2 cut(s)	330, 342
BshFI	GGCC	2 cut(s)	583, 744
BshVI	ATCGAT	2 cut(s)	219, 234
BsiSI	CCGG	2 cut(s)	61, 80
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	60, 728
BsmAI	GTCTC	2 cut(s)	142, 248
BsmFI	GGGAC	1 cut(s)	546
BsnI	GGCC	2 cut(s)	583, 744
Bsp143I	GATC	6 cut(s)	473, 486, 778, 861, 939, 1036
Bsp19I	CCATGG	2 cut(s)	264, 274
BspACI	CCGC	4 cut(s)	110, 189, 342, 410
BspANI	GGCC	2 cut(s)	583, 744
BspDI	ATCGAT	2 cut(s)	219, 234
BspFNI	CGCG	2 cut(s)	330, 342
BspLI	GGNNCC	1 cut(s)	346
BspMAI	CTGCAG	2 cut(s)	424, 755
BspPI	GGATC	3 cut(s)	481, 494, 1044
BspTI	CTTAAG	1 cut(s)	967
BsrDI	GCAATG	1 cut(s)	597
BssECI	CCNNGG	2 cut(s)	264, 274
BssMI	GATC	6 cut(s)	473, 486, 778, 861, 939, 1036
BssSI	CACGAG	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	264, 274
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	915, 956
Bst4CI	ACNGT	4 cut(s)	58, 91, 326, 840
Bst6I	CTCTTC	1 cut(s)	297
BstAFI	CTTAAG	1 cut(s)	967
BstAPI	GCANNNNNTGC	2 cut(s)	521, 707
BstC8I	GCNNGC	2 cut(s)	340, 742
BstDEI	CTNAG	3 cut(s)	304, 813, 1059
BstDSI	CCRYGG	2 cut(s)	264, 274
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	3 cut(s)	457, 656, 799
BstFNI	CGCG	2 cut(s)	330, 342
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	6 cut(s)	476, 489, 781, 864, 942, 1039
BstMAI	GTCTC	2 cut(s)	142, 248
BstMBI	GATC	6 cut(s)	473, 486, 778, 861, 939, 1036
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 344, 521, 698, 707, 750, 1010, 1022
BstNI	CCWGG	2 cut(s)	915, 956
BstNSI	RCATGY	1 cut(s)	539
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	913, 954
BstSFI	CTRYAG	2 cut(s)	420, 751
BstUI	CGCG	2 cut(s)	330, 342
BstV1I	GCAGC	9 cut(s)	247, 481, 679, 682, 685, 808, 988, 1025, 1028
BstX2I	RGATCY	1 cut(s)	939
BstYI	RGATCY	1 cut(s)	939
Bsu15I	ATCGAT	2 cut(s)	219, 234
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	2 cut(s)	583, 744
BsuTUI	ATCGAT	2 cut(s)	219, 234
BtgI	CCRYGG	2 cut(s)	264, 274
BtsCI	GGATG	3 cut(s)	457, 656, 799
BtsI	GCAGTG	2 cut(s)	489, 760
BtsIMutI	CAGTG	4 cut(s)	322, 489, 568, 760
Cac8I	GCNNGC	2 cut(s)	340, 742
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	101, 743, 917
ClaI	ATCGAT	2 cut(s)	219, 234
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	77, 384, 841
CviAII	CATG	4 cut(s)	265, 275, 536, 776
CviQI	GTAC	3 cut(s)	77, 384, 841
DdeI	CTNAG	3 cut(s)	304, 813, 1059
DpnI	GATC	6 cut(s)	475, 488, 780, 863, 941, 1038
DpnII	GATC	6 cut(s)	473, 486, 778, 861, 939, 1036
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	264, 274
Eco47I	GGWCC	2 cut(s)	101, 917
Eco91I	GGTNACC	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	917
EcoO65I	GGTNACC	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	913, 954
EcoT14I	CCWWGG	2 cut(s)	264, 274
ErhI	CCWWGG	2 cut(s)	264, 274
FaeI	CATG	4 cut(s)	268, 278, 539, 779
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	4 cut(s)	264, 274, 535, 775
FbaI	TGATCA	1 cut(s)	861
FblI	GTMKAC	1 cut(s)	771
FokI	GGATG	3 cut(s)	464, 663, 786
FspBI	CTAG	2 cut(s)	396, 603
GlaI	GCGC	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	583, 744
HapII	CCGG	2 cut(s)	61, 80
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	268, 278, 539, 779
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	7 cut(s)	121, 231, 254, 392, 547, 963, 1046
HpaII	CCGG	2 cut(s)	61, 80
HphI	GGTGA	5 cut(s)	43, 178, 179, 468, 1041
Hpy166II	GTNNAC	5 cut(s)	94, 214, 322, 546, 772
Hpy188I	TCNGA	5 cut(s)	126, 162, 251, 1009, 1045
Hpy188III	TCNNGA	2 cut(s)	19, 42
Hpy8I	GTNNAC	5 cut(s)	94, 214, 322, 546, 772
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	5 cut(s)	213, 434, 461, 489, 930
HpyCH4III	ACNGT	4 cut(s)	58, 91, 326, 840
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	8 cut(s)	422, 497, 640, 701, 753, 796, 834, 1013
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 344, 521, 698, 707, 750, 1010, 1022
HpyF3I	CTNAG	3 cut(s)	304, 813, 1059
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	4 cut(s)	268, 278, 539, 779
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	861
Kzo9I	GATC	6 cut(s)	473, 486, 778, 861, 939, 1036
LmnI	GCTCC	2 cut(s)	344, 737
Lsp1109I	GCAGC	9 cut(s)	247, 481, 679, 682, 685, 808, 988, 1025, 1028
LweI	GCATC	7 cut(s)	166, 303, 442, 783, 808, 1000, 1028
MaeI	CTAG	2 cut(s)	396, 603
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	4 cut(s)	130, 184, 817, 975
MalI	GATC	6 cut(s)	475, 488, 780, 863, 941, 1038
MboI	GATC	6 cut(s)	473, 486, 778, 861, 939, 1036
MboII	GAAGA	4 cut(s)	284, 773, 902, 1047
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	939
MluCI	AATT	2 cut(s)	143, 983
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	2 cut(s)	229, 746
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	4 cut(s)	459, 612, 714, 968
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	3 cut(s)	227, 260, 1025
MspCI	CTTAAG	1 cut(s)	967
MspI	CCGG	2 cut(s)	61, 80
MspR9I	CCNGG	2 cut(s)	915, 956
MunI	CAATTG	1 cut(s)	143
MvaI	CCWGG	2 cut(s)	915, 956
MvnI	CGCG	2 cut(s)	330, 342
MwoI	GCNNNNNNNGC	8 cut(s)	44, 344, 521, 698, 707, 750, 1010, 1022
NcoI	CCATGG	2 cut(s)	264, 274
NdeII	GATC	6 cut(s)	473, 486, 778, 861, 939, 1036
NlaIII	CATG	4 cut(s)	268, 278, 539, 779
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	2 cut(s)	130, 184
NspI	RCATGY	1 cut(s)	539
PciI	ACATGT	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	6 cut(s)	121, 231, 254, 392, 963, 1046
PflMI	CCANNNNNTGG	1 cut(s)	728
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	917
PscI	ACATGT	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	917
Psp6I	CCWGG	2 cut(s)	913, 954
PspEI	GGTNACC	1 cut(s)	184
PspGI	CCWGG	2 cut(s)	913, 954
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	3 cut(s)	101, 743, 917
PspPPI	RGGWCCY	1 cut(s)	917
PstI	CTGCAG	2 cut(s)	424, 755
PsuI	RGATCY	1 cut(s)	939
PvuII	CAGCTG	3 cut(s)	227, 260, 1025
RsaI	GTAC	3 cut(s)	78, 385, 842
RsaNI	GTAC	3 cut(s)	77, 384, 841
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	459, 612, 714, 968
Sau3AI	GATC	6 cut(s)	473, 486, 778, 861, 939, 1036
Sau96I	GGNCC	3 cut(s)	101, 743, 917
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	2 cut(s)	915, 956
SfaNI	GCATC	7 cut(s)	166, 303, 442, 783, 808, 1000, 1028
SfcI	CTRYAG	2 cut(s)	420, 751
SinI	GGWCC	2 cut(s)	101, 917
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	4 cut(s)	552, 846, 946, 967
SmoI	CTYRAG	4 cut(s)	552, 846, 946, 967
Sse9I	AATT	2 cut(s)	143, 983
SsiI	CCGC	4 cut(s)	110, 189, 342, 410
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	2 cut(s)	396, 603
StyD4I	CCNGG	2 cut(s)	913, 954
StyI	CCWWGG	2 cut(s)	264, 274
TaaI	ACNGT	4 cut(s)	58, 91, 326, 840
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	4 cut(s)	41, 119, 219, 234
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	2 cut(s)	143, 983
TfiI	GAWTC	6 cut(s)	121, 231, 254, 392, 963, 1046
Tru1I	TTAA	4 cut(s)	459, 612, 714, 968
Tru9I	TTAA	4 cut(s)	459, 612, 714, 968
TscAI	CASTG	4 cut(s)	329, 496, 568, 760
TseFI	GTSAC	2 cut(s)	130, 184
Tsp45I	GTSAC	2 cut(s)	130, 184
TspDTI	ATGAA	1 cut(s)	405
TspGWI	ACGGA	2 cut(s)	111, 975
TspRI	CASTG	4 cut(s)	329, 496, 568, 760
Van91I	CCANNNNNTGG	1 cut(s)	728
Vha464I	CTTAAG	1 cut(s)	967
VpaK11BI	GGWCC	2 cut(s)	101, 917
XceI	RCATGY	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	2 cut(s)	396, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.