Rroxscaffold_4G00298590

Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
18385729 .. 18388322
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298590.1

Sequence Viewer

Length: 1041 bp
ATGGCATTCATGGCCGCCGTTTCACGCGCCGCGCTCTTTTCCCGTGCCGGAATCATCCGCTCCATGAGCAACATCCCCGAGAACACGGTCTACGGCGGCCCAAAGACCCAGAGCCCGGACCACCGCGTCACCGTCACCCAAATCAAGCAGAAGCACAACAAGGGCGAGCCCATCACCATGGTCACCGCCTACGACTACCCCTCCGCGGTCCACCTCGACTCCGCCGGAATTGACATTGCCTTGGTCGGCGACTCGGCTGCGATGGTCGTGCACGGCTACGACACAACCCTCCCTATAACGCTTGAAGAGATGCTCGTCCACTGCCGAGCGGTGGCGCGTGGGGCCAAGCGCCCGCTTTTGGTTGGGGACTTGCCGTTTGGATTCTACGAATCTAGCTCCATTCAGGCTATCGATACAGCGGTGAGGATTTTGAAGGAAGGAGCAATGGATGCAATAAAATTGGAAGGAGGGGCACCTTCGAGGATTACTGCGGCAAAATCTATTGTTGAGGCTGGAATTGCTGTGATGGGGCATGTGGGACTTACCCCACAGGCGATTAGCGTTCTCGGGGGTTTAGGCCTCAAGGAAGGAATGTTGCTAGTTGTGGAGACCGCATTGGCTTTGCAAGAAGCTGGGTGCTTTTCTGTTGTTTTGGAATGTGTACCGCCACTAGTGGCGGCTGCAGCAACGTCTGCTCTTCAGATTCCTACAATCGGCATTGGAGCAGGGCCTTTTTGCAGTGGACAGGTGCTAGTTTACCATGATCTTCTTGGAATGATGCAGCACCCACATCATGCCAAGGTTACCCCTAAATTCTGTAAGCAGTTTGCACAGGTTGGAGATGTCATCAACAAAGCTCTTGTAGACTACAAGGAAGAAGTGACTAGTAGGACGTTCCCAGGCGCTGCCCACAGCCCATACAAGATTAACCCTGCTGAGGTTGATGGCTTTTTAAGCGAGTTACAAAAAATGGGTTTGGACAAGGCTGCATCTGCGGCAGCTGAAGCAGCTGAGAAGATAAATACAAACAAATCAAAGTAA

Protein Analysis

346

Amino Acids

36.37

Weight (kDa)

6.6

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pantoate_transf PF02548 42 - 301 2.2e-97 Ketopantoate hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 472
AccBSI CCGCTC 2 cut(s) 60, 329
AccI GTMKAC 2 cut(s) 90, 864
AccII CGCG 5 cut(s) 27, 32, 126, 206, 337
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 2 cut(s) 683, 1023
AfaI GTAC 1 cut(s) 663
AfiI CCNNNNNNNGG 6 cut(s) 115, 205, 331, 358, 713, 937
AgsI TTSAA 2 cut(s) 305, 433
AhlI ACTAGT 2 cut(s) 670, 884
AjnI CCWGG 1 cut(s) 898
AluBI AGCT 5 cut(s) 396, 632, 857, 1001, 1010
AluI AGCT 5 cut(s) 396, 632, 857, 1001, 1010
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 602
Alw44I GTGCAC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 905
Ama87I CYCGRG 2 cut(s) 77, 566
AoxI GGCC 5 cut(s) 12, 97, 342, 577, 728
ApaLI GTGCAC 1 cut(s) 269
ApeKI GCWGC 8 cut(s) 257, 680, 683, 781, 905, 986, 998, 1007
ApoI RAATTY 1 cut(s) 812
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AspLEI GCGC 5 cut(s) 29, 34, 337, 351, 905
AspS9I GGNCC 5 cut(s) 98, 118, 208, 342, 728
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 5 cut(s) 121, 127, 166, 175, 433
AvaI CYCGRG 2 cut(s) 77, 566
AvaII GGWCC 2 cut(s) 118, 208
BaeGI GKGCMC 2 cut(s) 273, 475
BaeI ACNNNNGTAYC 2 cut(s) 405, 438
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 2 cut(s) 116, 171
Bbv12I GWGCWC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 936
BbvI GCAGC 8 cut(s) 244, 667, 695, 793, 892, 973, 1010, 1019
BccI CCATC 4 cut(s) 179, 256, 520, 938
BceAI ACGGC 4 cut(s) 2, 109, 289, 358
BcgI CGANNNNNNTGC 4 cut(s) 239, 250, 273, 284
BciT130I CCWGG 1 cut(s) 900
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 602
BcuI ACTAGT 2 cut(s) 670, 884
BfaI CTAG 5 cut(s) 393, 599, 671, 752, 885
BfmI CTRYAG 1 cut(s) 681
BfoI RGCGCY 2 cut(s) 352, 906
Bme1390I CCNGG 2 cut(s) 116, 900
Bme18I GGWCC 2 cut(s) 118, 208
BmeT110I CYCGRG 2 cut(s) 77, 566
BmgT120I GGNCC 5 cut(s) 98, 118, 208, 342, 728
BmiI GGNNCC 2 cut(s) 343, 474
BmrFI CCNGG 2 cut(s) 116, 900
BmsI GCATC 4 cut(s) 300, 439, 768, 998
Bpu10I CCTNAGC 1 cut(s) 936
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 116
Bsa29I ATCGAT 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 5 cut(s) 177, 204, 240, 798, 898
BsaXI ACNNNNNCTCC 4 cut(s) 185, 203, 215, 233
Bsc4I CCNNNNNNNGG 6 cut(s) 115, 205, 331, 358, 713, 937
Bse3DI GCAATG 2 cut(s) 234, 450
BseBI CCWGG 1 cut(s) 900
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 5 cut(s) 177, 204, 240, 798, 898
BseGI GGATG 3 cut(s) 54, 72, 454
BseLI CCNNNNNNNGG 6 cut(s) 115, 205, 331, 358, 713, 937
BseMI GCAATG 2 cut(s) 234, 450
BseMII CTCAG 2 cut(s) 927, 1002
BseSI GKGCMC 2 cut(s) 273, 475
BseXI GCAGC 8 cut(s) 244, 667, 695, 793, 892, 973, 1010, 1019
BseYI CCCAGC 1 cut(s) 632
Bsh1236I CGCG 5 cut(s) 27, 32, 126, 206, 337
BshFI GGCC 5 cut(s) 14, 99, 344, 579, 730
BshNI GGYRCC 1 cut(s) 472
BshVI ATCGAT 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 2 cut(s) 77, 566
BsiSI CCGG 3 cut(s) 48, 116, 225
BslFI GGGAC 2 cut(s) 380, 552
BslI CCNNNNNNNGG 6 cut(s) 115, 205, 331, 358, 713, 937
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 2 cut(s) 380, 552
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 5 cut(s) 14, 99, 344, 579, 730
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 2 cut(s) 77, 566
Bsp1286I GDGCHC 4 cut(s) 116, 171, 273, 475
Bsp143I GATC 1 cut(s) 763
Bsp19I CCATGG 1 cut(s) 177
BspANI GGCC 5 cut(s) 14, 99, 344, 579, 730
BspCNI CTCAG 2 cut(s) 928, 1003
BspDI ATCGAT 1 cut(s) 411
BspFNI CGCG 5 cut(s) 27, 32, 126, 206, 337
BspLI GGNNCC 2 cut(s) 343, 474
BspMAI CTGCAG 1 cut(s) 685
BspQI GCTCTTC 1 cut(s) 702
BspT107I GGYRCC 1 cut(s) 472
BspTNI GGTCTC 1 cut(s) 602
BsrBI CCGCTC 2 cut(s) 60, 329
BsrDI GCAATG 2 cut(s) 234, 450
BssECI CCNNGG 5 cut(s) 177, 204, 240, 798, 898
BssMI GATC 1 cut(s) 763
BssT1I CCWWGG 3 cut(s) 177, 240, 798
Bst2UI CCWGG 1 cut(s) 900
Bst4CI ACNGT 2 cut(s) 88, 133
Bst6I CTCTTC 2 cut(s) 300, 702
BstAPI GCANNNNNTGC 2 cut(s) 449, 692
BstC8I GCNNGC 2 cut(s) 167, 353
BstDEI CTNAG 2 cut(s) 936, 1011
BstDSI CCRYGG 2 cut(s) 177, 204
BstEII GGTNACC 2 cut(s) 181, 802
BstF5I GGATG 3 cut(s) 54, 72, 454
BstFNI CGCG 5 cut(s) 27, 32, 126, 206, 337
BstH2I RGCGCY 2 cut(s) 352, 906
BstHHI GCGC 5 cut(s) 29, 34, 337, 351, 905
BstKTI GATC 1 cut(s) 766
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 1 cut(s) 763
BstNI CCWGG 1 cut(s) 900
BstNSI RCATGY 1 cut(s) 536
BstPI GGTNACC 2 cut(s) 181, 802
BstSCI CCNGG 2 cut(s) 114, 898
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 2 cut(s) 273, 475
BstUI CGCG 5 cut(s) 27, 32, 126, 206, 337
BstV1I GCAGC 8 cut(s) 244, 667, 695, 793, 892, 973, 1010, 1019
BstXI CCANNNNNNTGG 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 5 cut(s) 14, 99, 344, 579, 730
BsuTUI ATCGAT 1 cut(s) 411
BtgI CCRYGG 2 cut(s) 177, 204
BtgZI GCGATG 1 cut(s) 275
BtsCI GGATG 3 cut(s) 54, 72, 454
BtsI GCAGTG 2 cut(s) 319, 745
BtsIMutI CAGTG 2 cut(s) 319, 745
Cac8I GCNNGC 2 cut(s) 167, 353
CaiI CAGNNNCTG 1 cut(s) 905
CfoI GCGC 5 cut(s) 29, 34, 337, 351, 905
Cfr13I GGNCC 5 cut(s) 98, 118, 208, 342, 728
Cfr42I CCGCGG 1 cut(s) 207
ClaI ATCGAT 1 cut(s) 411
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 662
CviAII CATG 6 cut(s) 10, 64, 178, 533, 761, 794
CviQI GTAC 1 cut(s) 662
DdeI CTNAG 2 cut(s) 936, 1011
DpnI GATC 1 cut(s) 765
DpnII GATC 1 cut(s) 763
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 300, 702
EarI CTCTTC 2 cut(s) 300, 702
EciI GGCGGA 1 cut(s) 211
Eco130I CCWWGG 3 cut(s) 177, 240, 798
Eco147I AGGCCT 1 cut(s) 579
Eco24I GRGCYC 2 cut(s) 116, 171
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 2 cut(s) 118, 208
Eco57I CTGAAG 2 cut(s) 683, 1023
Eco88I CYCGRG 2 cut(s) 77, 566
Eco91I GGTNACC 2 cut(s) 181, 802
EcoO109I RGGNCCY 1 cut(s) 728
EcoO65I GGTNACC 2 cut(s) 181, 802
EcoRII CCWGG 1 cut(s) 898
EcoT14I CCWWGG 3 cut(s) 177, 240, 798
EcoT38I GRGCYC 2 cut(s) 116, 171
ErhI CCWWGG 3 cut(s) 177, 240, 798
FaeI CATG 6 cut(s) 13, 67, 181, 536, 764, 797
FaiI YATR 8 cut(s) 11, 65, 179, 296, 534, 762, 795, 919
FaqI GGGAC 2 cut(s) 380, 552
FatI CATG 6 cut(s) 9, 63, 177, 532, 760, 793
FauI CCCGC 1 cut(s) 360
FblI GTMKAC 2 cut(s) 90, 864
FokI GGATG 3 cut(s) 41, 59, 461
FriOI GRGCYC 2 cut(s) 116, 171
FspBI CTAG 5 cut(s) 393, 599, 671, 752, 885
GlaI GCGC 5 cut(s) 28, 33, 336, 350, 904
GsaI CCCAGC 1 cut(s) 636
HaeII RGCGCY 2 cut(s) 352, 906
HaeIII GGCC 5 cut(s) 14, 99, 344, 579, 730
HapII CCGG 3 cut(s) 48, 116, 225
HgaI GACGC 1 cut(s) 115
HhaI GCGC 5 cut(s) 29, 34, 337, 351, 905
Hin1II CATG 6 cut(s) 13, 67, 181, 536, 764, 797
Hin6I GCGC 5 cut(s) 27, 32, 335, 349, 903
HinP1I GCGC 5 cut(s) 27, 32, 335, 349, 903
HinfI GANTC 6 cut(s) 51, 218, 251, 381, 389, 703
HpaII CCGG 3 cut(s) 48, 116, 225
HphI GGTGA 5 cut(s) 121, 127, 166, 175, 433
Hpy166II GTNNAC 8 cut(s) 91, 211, 271, 319, 662, 743, 757, 865
Hpy188I TCNGA 1 cut(s) 702
Hpy8I GTNNAC 8 cut(s) 91, 211, 271, 319, 662, 743, 757, 865
HpyAV CCTTC 5 cut(s) 427, 431, 458, 486, 581
HpyCH4III ACNGT 2 cut(s) 88, 133
HpyCH4IV ACGT 2 cut(s) 689, 893
HpyCH4V TGCA 8 cut(s) 271, 452, 625, 683, 738, 781, 830, 989
HpyF3I CTNAG 2 cut(s) 936, 1011
HpySE526I ACGT 2 cut(s) 689, 893
Hsp92II CATG 6 cut(s) 13, 67, 181, 536, 764, 797
HspAI GCGC 5 cut(s) 27, 32, 335, 349, 903
KspI CCGCGG 1 cut(s) 207
Kzo9I GATC 1 cut(s) 763
LguI GCTCTTC 1 cut(s) 702
LmnI GCTCC 4 cut(s) 65, 401, 440, 722
Lsp1109I GCAGC 8 cut(s) 244, 667, 695, 793, 892, 973, 1010, 1019
LweI GCATC 4 cut(s) 300, 439, 768, 998
MaeI CTAG 5 cut(s) 393, 599, 671, 752, 885
MaeII ACGT 2 cut(s) 689, 893
MaeIII GTNAC 6 cut(s) 127, 133, 181, 802, 880, 960
MalI GATC 1 cut(s) 765
MbiI CCGCTC 2 cut(s) 60, 329
MboI GATC 1 cut(s) 763
MboII GAAGA 5 cut(s) 317, 689, 758, 887, 1027
MhlI GDGCHC 4 cut(s) 116, 171, 273, 475
MluCI AATT 4 cut(s) 228, 458, 516, 812
MlyI GAGTC 2 cut(s) 212, 245
MmeI TCCRAC 1 cut(s) 817
MnlI CCTC 9 cut(s) 211, 224, 299, 417, 461, 474, 502, 590, 931
MseI TTAA 2 cut(s) 927, 953
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 4 cut(s) 206, 419, 1001, 1010
MspI CCGG 3 cut(s) 48, 116, 225
MspR9I CCNGG 2 cut(s) 116, 900
MteI GCGCNGCGC 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 1 cut(s) 900
MvnI CGCG 5 cut(s) 27, 32, 126, 206, 337
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 177
NdeII GATC 1 cut(s) 763
NlaIII CATG 6 cut(s) 13, 67, 181, 536, 764, 797
NlaIV GGNNCC 2 cut(s) 343, 474
NmeAIII GCCGAG 2 cut(s) 233, 350
NmuCI GTSAC 4 cut(s) 127, 133, 181, 880
NspI RCATGY 1 cut(s) 536
PceI AGGCCT 1 cut(s) 579
PciSI GCTCTTC 1 cut(s) 702
PctI GAATGC 1 cut(s) 5
PfeI GAWTC 4 cut(s) 51, 381, 389, 703
PleI GAGTC 2 cut(s) 212, 245
PpsI GAGTC 2 cut(s) 212, 245
Psp6I CCWGG 1 cut(s) 898
PspEI GGTNACC 2 cut(s) 181, 802
PspFI CCCAGC 1 cut(s) 632
PspGI CCWGG 1 cut(s) 898
PspN4I GGNNCC 2 cut(s) 343, 474
PspPI GGNCC 5 cut(s) 98, 118, 208, 342, 728
PsrI GAACNNNNNNTAC 2 cut(s) 74, 106
PstI CTGCAG 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 905
PvuII CAGCTG 2 cut(s) 1001, 1010
RsaI GTAC 1 cut(s) 663
RsaNI GTAC 1 cut(s) 662
RseI CAYNNNNRTG 1 cut(s) 176
SacII CCGCGG 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 702
SaqAI TTAA 2 cut(s) 927, 953
Sau3AI GATC 1 cut(s) 763
Sau96I GGNCC 5 cut(s) 98, 118, 208, 342, 728
SchI GAGTC 2 cut(s) 212, 245
ScrFI CCNGG 2 cut(s) 116, 900
SduI GDGCHC 4 cut(s) 116, 171, 273, 475
SfaNI GCATC 4 cut(s) 300, 439, 768, 998
SfcI CTRYAG 1 cut(s) 681
Sfr303I CCGCGG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 207
SinI GGWCC 2 cut(s) 118, 208
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
SpeI ACTAGT 2 cut(s) 670, 884
Sse9I AATT 4 cut(s) 228, 458, 516, 812
SseBI AGGCCT 1 cut(s) 579
SspMI CTAG 5 cut(s) 393, 599, 671, 752, 885
StuI AGGCCT 1 cut(s) 579
StyD4I CCNGG 2 cut(s) 114, 898
StyI CCWWGG 3 cut(s) 177, 240, 798
TaaI ACNGT 2 cut(s) 88, 133
TaiI ACGT 2 cut(s) 692, 896
TaqI TCGA 3 cut(s) 216, 411, 479
TasI AATT 4 cut(s) 228, 458, 516, 812
TauI GCSGC 6 cut(s) 17, 32, 99, 494, 680, 998
TfiI GAWTC 4 cut(s) 51, 381, 389, 703
Tru1I TTAA 2 cut(s) 927, 953
Tru9I TTAA 2 cut(s) 927, 953
TscAI CASTG 2 cut(s) 326, 745
TseFI GTSAC 4 cut(s) 127, 133, 181, 880
TseI GCWGC 8 cut(s) 257, 680, 683, 781, 905, 986, 998, 1007
Tsp45I GTSAC 4 cut(s) 127, 133, 181, 880
TspRI CASTG 2 cut(s) 326, 745
VneI GTGCAC 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 118, 208
XapI RAATTY 1 cut(s) 812
XceI RCATGY 1 cut(s) 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XmiI GTMKAC 2 cut(s) 90, 864
XspI CTAG 5 cut(s) 393, 599, 671, 752, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.